{ "_id": "6a27b86324555f66ed539935", "Package": "landsepi", "Type": "Package", "Encoding": "UTF-8", "Title": "Landscape Epidemiology and Evolution", "Version": "1.5.3", "Date": "2026-01-07", "Authors@R": "c(person(given = \"Loup\",\nfamily = \"Rimbaud\",\nrole = \"aut\",\nemail = \"loup.rimbaud@inrae.fr\",\ncomment = c(ORCID = \"0000-0002-8098-9984\")),\nperson(given = \"Marta\",\nfamily = \"Zaffaroni\",\nrole = \"aut\",\nemail = \"marta.zaffaroni@inrae.fr\",\ncomment = c(ORCID = \"0000-0002-2951-8626\")),\nperson(given = \"Jean-François\",\nfamily = \"Rey\",\nrole = c(\"aut\",\"cre\"),\nemail = \"jean-francois.rey@inrae.fr\",\ncomment = c(ORCID = \"0000-0003-3281-6701\")),\nperson(given = \"Julien\",\nfamily = \"Papaix\",\nrole = \"aut\",\nemail = \"julien.papaix@inrae.fr\"),\nperson(given = \"Jean-Loup\",\nfamily = \"Gaussen\",\nrole = \"ctb\",\nemail = \"jean-loup-thomas.gaussen@inrae.fr\"),\nperson(given = \"Manon\",\nfamily = \"Couty\",\nrole = \"ctb\",\nemail = \"manon.couty@insa-lyon.fr\"))", "Maintainer": "Jean-François Rey ", "Description": "A stochastic, spatially-explicit, demo-genetic model\nsimulating the spread and evolution of a plant pathogen in a\nheterogeneous landscape to assess resistance deployment\nstrategies. 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Custom 3D array to define the inoculum", "Visualization", "Updating the survival probability during the off-season", "Setting chemical treatments", "Choosing output variables", "Equations", "Parameterisation", "Running the simulation" ], "created": "2021-07-26 15:40:02", "modified": "2024-09-24 03:02:04", "commits": 8 }, { "source": "O2-run_exp_design.Rmd", "filename": "O2-run_exp_design.html", "title": "2 - Running a numerical experimental design", "engine": "knitr::rmarkdown", "headings": [ "Write the experimental design", "Run the simulations", "Compute your own output variables" ], "created": "2021-07-26 15:40:02", "modified": "2024-09-04 02:53:04", "commits": 6 }, { "source": "O3-landscape_dispersal.Rmd", "filename": "O3-landscape_dispersal.html", "title": "3 - Parameterising landscape and dispersal", "engine": "knitr::rmarkdown", "headings": [ "Using your own landscape", "Using your own croptype allocation", "Computing the dispersal matrix", "An example", "Plotting landscape and dispersal" ], "created": "2021-07-26 15:40:02", "modified": "2023-07-19 10:32:52", "commits": 4 }, { "source": "O4-run_sex_repro.Rmd", "filename": "O4-run_sex_repro.html", "title": "4 - Running a simple simulation with a pathogen with mixed reproduction system", "engine": "knitr::rmarkdown", "headings": [ "Initialisation of simulation parameters, seed, time and landscape parameters", "Setting the probability of sexual reproduction", "Setting the time of release of propagules produced at the end of a cropping season", "Sexual propagules", "Clonal propagules", "Setting pathogen dispersal (both for sexual and clonal propagules)", "Setting recombination between resistance genes", "Setting croptypes, cultivars and resistance genes", "Running the simulation" ], "created": "2022-10-05 10:10:05", "modified": "2024-09-24 03:02:04", "commits": 5 }, { "source": "list_of_parameters.Rnw", "filename": "list_of_parameters.pdf", "title": "5 - list of parameters", "engine": "utils::Sweave", "headings": [], "created": "2020-07-01 13:40:02", "modified": "2023-02-27 08:32:34", "commits": 6 }, { "source": "landsepi_poster.Rnw", "filename": "landsepi_poster.pdf", "title": "6 - Poster", "engine": "utils::Sweave", "headings": [], "created": "2021-07-26 15:40:02", "modified": "2023-02-27 08:32:34", "commits": 2 }, { "source": "O5-bibliography.Rmd", "filename": "O5-bibliography.html", "title": "Landsepi - Bibliography", "engine": "knitr::rmarkdown", "headings": [], "created": "2024-09-04 02:53:04", "modified": "2024-09-04 02:53:04", "commits": 1 } ], "_score": 3.401400540781544, "_indexed": false, "_nocasepkg": "landsepi", "_universes": [ "cran" ], "_indexurl": "https://mechantrouquin.r-universe.dev/landsepi", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.5.3", "date": "2026-06-09T06:50:44.000Z", "distro": "noble", "arch": "aarch64", "commit": "c263668cf382bd70cac9624cc11b4fd77a33fab6", "fileid": "09725287bcf38b6ada9af481ece733821eec6054987ce9d6976f66be7c190b13", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/27188802600" }, { "r": "4.7.0", "os": "linux", "version": "1.5.3", "date": "2026-06-09T06:50:43.000Z", "distro": "noble", "arch": "x86_64", "commit": "c263668cf382bd70cac9624cc11b4fd77a33fab6", "fileid": "e408af53c778cf7f3a158049935aef4bddedf30fc4fd46e77fb4a16a47762d09", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/27188802600" }, { "r": "4.6.0", "os": "linux", "version": "1.5.3", "date": "2026-06-09T06:51:01.000Z", "distro": "noble", "arch": "aarch64", "commit": "c263668cf382bd70cac9624cc11b4fd77a33fab6", "fileid": "67d8f95c3af0dbaca96d02895ef52198a4332974a87152ca00935aeabcdd823c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/27188802600" }, { "r": "4.6.0", "os": "linux", "version": "1.5.3", "date": "2026-06-09T06:51:57.000Z", "distro": "noble", "arch": "x86_64", "commit": "c263668cf382bd70cac9624cc11b4fd77a33fab6", "fileid": "ba4a6dc5c756782f4a6c1be410e1338f3d55f392961729a254cc01cd9a12074e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/27188802600" }, { "r": "4.6.0", "os": "wasm", "version": "1.5.3", "date": "2026-06-09T06:50:59.000Z", "arch": "emscripten", "commit": "c263668cf382bd70cac9624cc11b4fd77a33fab6", "fileid": "304de85029f36e5ae4ea2663685d35e518c7c725db67d60dc14e6dcb129d1f8e", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/27188802600" } ] }