{ "_id": "6ad26599475807f7554a6130", "Package": "lande", "Type": "Package", "Title": "Tools for Evolutionary Selection Analysis", "Version": "0.1.0", "Authors@R": "c(\nperson(\"Vanessa\", \"Zhou\",\nrole = c(\"aut\"),\ncomment = c(affiliation = \"College of Computing, Georgia Institute of Technology, Atlanta, GA, United States\")),\nperson(\"Ali Sean\", \"Khan\",\nrole = c(\"aut\"),\ncomment = c(affiliation = \"College of Computing, Georgia Institute of Technology, Atlanta, GA, United States\")),\nperson(\"Calvin\", \"Yu\",\nrole = c(\"aut\"),\ncomment = c(affiliation = \"College of Computing, Georgia Institute of Technology, Atlanta, GA, United States\")),\nperson(\"Taylor\", \"Papke\",\nrole = c(\"aut\"),\ncomment = c(affiliation = \"College of Computing, Georgia Institute of Technology, Atlanta, GA, United States\")),\nperson(\"Dima\", \"Al Nabhani\",\nrole = c(\"aut\"),\ncomment = c(affiliation = \"College of Computing, Georgia Institute of Technology, Atlanta, GA, United States\")),\nperson(\"Guillermo\", \"Garcia-Costoya\",\nrole = c(\"aut\"),\ncomment = c(affiliation = \"School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, United States\")),\nperson(c(\"James\", \"T.\"), \"Stroud\", email = \"stroud@gatech.edu\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(affiliation = \"School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, United States\"))\n)", "Description": "Estimates selection differentials and linear, quadratic\nand correlational selection gradients on relative fitness\nfollowing Lande and Arnold (1983)\n, with p-values from\nthe logistic model for survival and from a Poisson or negative\nbinomial model for counts. Fits cubic spline fitness functions\nas in Schluter (1988) \nand two-trait fitness surfaces drawn only where there are data,\nand computes adaptive landscapes of mean fitness against the\npopulation mean for one or two traits, by period and for\nseveral groups on one surface. 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"page": "peak_difference", "title": "Compare the fitted fitness at two points of a surface", "topics": [ "peak_difference" ] }, { "page": "plot_adaptive_landscape", "title": "Plot Adaptive Landscape", "topics": [ "plot_adaptive_landscape" ] }, { "page": "plot_adaptive_landscape_3d", "title": "Plot Adaptive Landscape (3D Perspective)", "topics": [ "plot_adaptive_landscape_3d" ] }, { "page": "plot_canonical_axes", "title": "Fitness along the canonical axes", "topics": [ "plot_canonical_axes" ] }, { "page": "plot_correlated_fitness", "title": "Plot Correlated Fitness Surface", "topics": [ "plot_correlated_fitness" ] }, { "page": "plot_correlated_fitness_enhanced", "title": "Plot Enhanced Correlated Fitness Surface", "topics": [ "plot_correlated_fitness_enhanced" ] }, { "page": "plot_fitness_surfaces_comparison", "title": "Plot Fitness Surfaces Comparison", "topics": [ "plot_fitness_surfaces_comparison" ] }, { "page": "plot_temporal_landscape", "title": "Plot fitness functions and 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