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  "Title": "Predicting Invasion Probabilities from Phylogenetic Data and\nSpecies Traits",
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  "Description": "A phylogenetic modelling approach for predicting species\ninvasion risk, out of a given pool of local species where a\nsubset is known to be invasive elsewhere. The package uses\nphylogenetic signal estimation and phylogenetic linear and\nlogistic models to estimate probabilities of being invasive\nbased on phylogeny and any set of additional predictors. A\nranking method is implemented to evaluate prioritisation\nstrategies. A manuscript describing these methods, by Shahar\nDubiner and Tamar Guy-Haim, is in preparation.",
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