{
  "_id": "6ab8d0d299f7aa8c6aa36e08",
  "Package": "iDINGO",
  "Type": "Package",
  "Title": "Integrative Differential Network Analysis in Genomics",
  "Version": "1.0.4",
  "Date": "2020-07-17",
  "Author": "Caleb A. Class <cclass@butler.edu>, Min Jin Ha\n<mjha@mdanderson.org>",
  "Maintainer": "Caleb A. Class <cclass@butler.edu>",
  "Description": "Fits covariate dependent partial correlation matrices for\nintegrative models to identify differential networks between\ntwo groups. The methods are described in Class et. al., (2018)\n<doi:10.1093/bioinformatics/btx750> and Ha et. al., (2015)\n<doi:10.1093/bioinformatics/btv406>.",
  "License": "GPL-2",
  "LazyLoad": "yes",
  "Packaged": {
    "Date": "2026-09-27 08:12:42 UTC",
    "User": "root"
  },
  "RoxygenNote": "7.1.1",
  "NeedsCompilation": "no",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2020-07-30 13:00:02 UTC",
  "RemoteUrl": "https://github.com/cran/iDINGO",
  "RemoteRef": "HEAD",
  "RemoteSha": "f0805797098590fe3e2b5168dafe72a2849c1f46",
  "_user": "cran",
  "_type": "src",
  "_file": "iDINGO_1.0.4.tar.gz",
  "_fileid": "https://r2.ropensci.org/533dc7308339b8cc46852d99c52dac8dd25ebb48be4efc7bed184c194d26df4f",
  "_filesize": 365868,
  "_sha256": "533dc7308339b8cc46852d99c52dac8dd25ebb48be4efc7bed184c194d26df4f",
  "_expires": "2027-01-05T08:16:16.000Z",
  "_created": "2026-09-27T08:12:42.000Z",
  "_published": "2026-09-27T08:16:18.472Z",
  "_jobs": [
    {
      "job": 108581204402,
      "time": 180,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10927102406"
    },
    {
      "job": 108581204449,
      "time": 144,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10926778778"
    },
    {
      "job": 108580699232,
      "time": 195,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10926604481"
    },
    {
      "job": 108581204388,
      "time": 119,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10926918261"
    },
    {
      "job": 108581204600,
      "time": 68,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "10927705023"
    },
    {
      "job": 108581204394,
      "time": 73,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10927420420"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/36305281051",
  "_status": "success",
  "_upstream": "https://github.com/cran/iDINGO",
  "_commit": {
    "id": "f0805797098590fe3e2b5168dafe72a2849c1f46",
    "author": "Caleb A. Class <cclass@butler.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.4\n",
    "time": 1596114002
  },
  "_maintainer": {
    "name": "Caleb A. Class",
    "email": "cclass@butler.edu"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "igraph",
      "role": "Depends"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "glasso",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "GGMridge",
      "role": "Imports"
    },
    {
      "package": "visNetwork",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 3,
  "_contributors": [
    {
      "user": "minjinha",
      "count": 1,
      "uuid": 31215532
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 630,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 343,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/iDINGO"
  },
  "_mentions": 4,
  "_searchresults": 20,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/iDINGO.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2017-08-22"
    },
    {
      "version": "1.0.1",
      "date": "2017-08-24"
    },
    {
      "version": "1.0.2",
      "date": "2017-10-12"
    },
    {
      "version": "1.0.3",
      "date": "2019-09-06"
    },
    {
      "version": "1.0.4",
      "date": "2020-07-30"
    }
  ],
  "_exports": [
    "dingo",
    "extendedBIC",
    "Greg.em",
    "idingo",
    "plotNetwork",
    "scaledMat",
    "scoring.boot",
    "scoring.boot.parallel",
    "Sigmax",
    "single.boot",
    "trans.Fisher"
  ],
  "_datasets": [
    {
      "name": "brca",
      "title": "Modified TCGA Breast Cancer data",
      "object": "brca",
      "file": "brca.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "gbm",
      "title": "Modified TCGA Glioblastoma data",
      "object": "gbm",
      "file": "gbm.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "x",
        "AKT1",
        "AKT2",
        "AKT3",
        "FOXO1A",
        "FOXO3A",
        "MLLT7",
        "GAB1",
        "IRS1",
        "PDPK1",
        "PIK3C2B",
        "PIK3C2G",
        "PIK3CA",
        "PIK3CB",
        "PIK3CD",
        "PIK3CG",
        "PIK3R1",
        "PIK3R2",
        "PTEN"
      ],
      "rows": 156,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "iDINGO-package",
      "title": "iDINGO: Integrative Differential Network Analysis in Genomics",
      "topics": [
        "iDINGO-package",
        "iDINGO"
      ]
    },
    {
      "page": "brca",
      "title": "Modified TCGA Breast Cancer data",
      "topics": [
        "brca"
      ]
    },
    {
      "page": "dingo",
      "title": "Fit DINGO model",
      "topics": [
        "dingo"
      ]
    },
    {
      "page": "extendedBIC",
      "title": "Extended bayesian information criteria for gaussian graphical models",
      "topics": [
        "extendedBIC"
      ]
    },
    {
      "page": "gbm",
      "title": "Modified TCGA Glioblastoma data",
      "topics": [
        "gbm"
      ]
    },
    {
      "page": "Greg.em",
      "title": "Fitting precision regression models",
      "topics": [
        "Greg.em"
      ]
    },
    {
      "page": "idingo",
      "title": "Fit iDINGO model",
      "topics": [
        "idingo"
      ]
    },
    {
      "page": "plotNetwork",
      "title": "Plot differential network",
      "topics": [
        "plotNetwork"
      ]
    },
    {
      "page": "scaledMat",
      "title": "scale a square matrix",
      "topics": [
        "scaledMat"
      ]
    },
    {
      "page": "scoring.boot",
      "title": "Calculating differential score",
      "topics": [
        "scoring.boot"
      ]
    },
    {
      "page": "scoring.boot.parallel",
      "title": "Calculating differential score with parallel bootstrap scoring",
      "topics": [
        "scoring.boot.parallel"
      ]
    },
    {
      "page": "Sigmax",
      "title": "group specific covariance matrices",
      "topics": [
        "Sigmax"
      ]
    },
    {
      "page": "single.boot",
      "title": "Calculating differential score for a single bootstrap",
      "topics": [
        "single.boot"
      ]
    },
    {
      "page": "trans.Fisher",
      "title": "Fisher's Z-transformation",
      "topics": [
        "trans.Fisher"
      ]
    }
  ],
  "_readme": "https://github.com/cran/iDINGO/raw/HEAD/README.md",
  "_rundeps": [
    "base64enc",
    "bslib",
    "cachem",
    "cli",
    "cpp11",
    "digest",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "fs",
    "GGMridge",
    "glasso",
    "glue",
    "highr",
    "htmltools",
    "htmlwidgets",
    "igraph",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "memoise",
    "mime",
    "mvtnorm",
    "pkgconfig",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "rlang",
    "rmarkdown",
    "sass",
    "scales",
    "tinytex",
    "vctrs",
    "viridisLite",
    "visNetwork",
    "xfun",
    "yaml"
  ],
  "_score": 3.079181246047625,
  "_indexed": true,
  "_nocasepkg": "idingo",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.4",
      "date": "2026-09-27T08:15:33.000Z",
      "distro": "resolute",
      "commit": "f0805797098590fe3e2b5168dafe72a2849c1f46",
      "fileid": "https://r2.ropensci.org/fc92158520e793f52ee9b5c7a1d6b02af2020bbd6d7b6052bbafd35145a008d4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36305281051"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.4",
      "date": "2026-09-27T08:14:58.000Z",
      "distro": "resolute",
      "commit": "f0805797098590fe3e2b5168dafe72a2849c1f46",
      "fileid": "https://r2.ropensci.org/078ff5df6cdd41193e2240bc0d65e364c52246eb31d3d56e4e989b042a7bef62",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36305281051"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.4",
      "date": "2026-09-27T08:14:56.000Z",
      "commit": "f0805797098590fe3e2b5168dafe72a2849c1f46",
      "fileid": "https://r2.ropensci.org/f6d27f9b85bd8e6b9a4a1ca78d7a70639fd4e4590dd11cdc1bece5885076ebbe",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36305281051"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.4",
      "date": "2026-09-27T08:13:35.000Z",
      "commit": "f0805797098590fe3e2b5168dafe72a2849c1f46",
      "fileid": "https://r2.ropensci.org/fa1d9dc1ac3662d39271bf93975d7d20705f8d1e3842d47f1993f8782da57cb6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36305281051"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.4",
      "date": "2026-09-27T08:13:44.000Z",
      "commit": "f0805797098590fe3e2b5168dafe72a2849c1f46",
      "fileid": "https://r2.ropensci.org/58a62bf1d25a285ff2f098cae0643b582238318c1a7da510068c0bfa7e07cf9b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/36305281051"
    }
  ]
}