{ "_id": "6ad8fb93db07788da70a964e", "Package": "hsquared", "Title": "'R' Interface for 'Julia'-Backed Quantitative-Genetic Models", "Version": "0.9.0", "Authors@R": "c(\nperson(\"Shinichi\", \"Nakagawa\", , \"itchyshin@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-7765-5182\")),\nperson(\"Yefeng\", \"Yang\", role = c(\"aut\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-8610-4016\")),\nperson(\"Szymon\", \"Drobniak\", role = c(\"aut\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-8101-6247\"))\n)", "Description": "Provides an interface for quantitative-genetic models in\n'R', backed by the 'HSquared.jl' engine for 'Julia'. Fits\nGaussian pedigree animal models by restricted maximum\nlikelihood, using average-information restricted maximum\nlikelihood (AI-REML; Gilmour et al. (1995)\n) for the univariate model. Returns\nheritability, variance components, breeding values, and\ncovariance and correlation matrices for multivariate models.\nFormula and pedigree validation can run without 'Julia'. Model\nfitting requires a local 'Julia' and 'HSquared.jl'; use\nhs_control(engine = \"validate\") to preview the model contract\nwithout fitting. What you may report is listed on the package\narticle 'Can I fit and report this?', not in\nvalidation_status(), which is a developer evidence table.\nModel-specific restrictions are documented in that article.\nUncertainty intervals are not coverage-calibrated.", "License": "MIT + file LICENSE", "URL": "https://itchyshin.github.io/hsquared/,\nhttps://github.com/itchyshin/hsquared,\nhttps://github.com/itchyshin/HSquared.jl", "BugReports": "https://github.com/itchyshin/hsquared/issues", "Encoding": "UTF-8", "Language": "en-US", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/roxygen2/version": "8.1.0", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-21 17:46:43 UTC", "User": "root" }, "Author": "Shinichi Nakagawa [aut, cre, cph] (ORCID:\n), Yefeng Yang [aut,\ncph] (ORCID: ), Szymon\nDrobniak [aut, cph] (ORCID:\n)", "Maintainer": "Shinichi Nakagawa ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2026-10-21 15:23:59 UTC", "RemoteUrl": "https://github.com/cran/hsquared", "RemoteRef": "HEAD", "RemoteSha": "0b9138d212f0237c5c9248016665ca24cc316f85", "_user": "cran", "_type": "src", "_file": "hsquared_0.9.0.tar.gz", "_fileid": "https://r2.ropensci.org/c164fc8aecba15919a58d244779dcd87493325bae01303932073b5dddd87766c", "_filesize": 1231936, "_sha256": "c164fc8aecba15919a58d244779dcd87493325bae01303932073b5dddd87766c", "_expires": "2027-01-29T17:51:13.000Z", "_created": "2026-10-21T17:46:43.000Z", "_published": "2026-10-21T17:51:15.536Z", "_upstream": "https://github.com/cran/hsquared", "_status": "success", "_maintainer": { "name": "Shinichi Nakagawa", "email": "itchyshin@gmail.com", "login": "itchyshin", "orcid": "0000-0002-7765-5182", "description": "An evolutionary biologist (with some Darwinian fitness in his arms), trying to learn how to use Git and R together. 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"genomic", "genomic_markers", "markers", "marker_scan", "qtl_scan", "single_step" ] }, { "page": "gwas", "title": "Post-fit relatedness-corrected marker scan (GWAS)", "topics": [ "gwas" ] }, { "page": "heritability", "title": "Extract heritability estimates", "topics": [ "heritability" ] }, { "page": "heritability_interval", "title": "Extract an experimental heritability confidence interval", "topics": [ "heritability_interval" ] }, { "page": "hs_control", "title": "Create hsquared control options", "topics": [ "hs_control" ] }, { "page": "hs_data", "title": "Create an hsquared data container", "topics": [ "hs_data" ] }, { "page": "hs_recovery_forest", "title": "Forest plot of a known-truth recovery study", "topics": [ "hs_recovery_forest" ] }, { "page": "hsquared", "title": "Fit a quantitative-genetic model", "topics": [ "hsquared" ] }, { "page": "hsquared-autoplot", "title": "ggplot2 visualizations for hsquared results", "topics": [ "autoplot.hsquared_fit", "autoplot.hs_gwas", 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