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"audit_gazepoint_condition_quality_imbalance", "title": "Audit condition-level quality imbalance", "topics": [ "audit_gazepoint_condition_quality_imbalance" ] }, { "page": "audit_gazepoint_design_balance", "title": "Audit Gazepoint experimental design balance", "topics": [ "audit_gazepoint_design_balance" ] }, { "page": "audit_gazepoint_event_sync", "title": "Audit Gazepoint event and timing synchronisation", "topics": [ "audit_gazepoint_event_sync" ] }, { "page": "audit_gazepoint_exclusion_flow", "title": "Audit Gazepoint exclusion and retention flow", "topics": [ "audit_gazepoint_exclusion_flow" ] }, { "page": "audit_gazepoint_gaze_signal_quality", "title": "Audit Gazepoint gaze-signal quality", "topics": [ "audit_gazepoint_gaze_signal_quality" ] }, { "page": "audit_gazepoint_master", "title": "Audit a Gazepoint master sample table", "topics": [ "audit_gazepoint_master" ] }, { "page": "audit_gazepoint_post_exclusion_balance", "title": "Audit post-exclusion condition balance", "topics": [ "audit_gazepoint_post_exclusion_balance" ] }, { "page": "audit_gazepoint_pupil_baseline", "title": "Audit Gazepoint pupil baseline quality", "topics": [ "audit_gazepoint_pupil_baseline" ] }, { "page": "audit_gazepoint_pupil_drift", "title": "Audit Gazepoint pupil drift", "topics": [ "audit_gazepoint_pupil_drift" ] }, { "page": "audit_gazepoint_pupil_gaps", "title": "Audit Gazepoint pupil interpolation gaps", "topics": [ "audit_gazepoint_pupil_gaps" ] }, { "page": "audit_gazepoint_pupil_imbalance", "title": "Audit Gazepoint pupil preprocessing imbalance", "topics": [ "audit_gazepoint_pupil_imbalance" ] }, { "page": "audit_gazepoint_pupil_overlap_risk", "title": "Audit Gazepoint pupil-response overlap risk", "topics": [ "audit_gazepoint_pupil_overlap_risk" ] }, { "page": "audit_gazepoint_pupil_reliability", "title": "Audit split-half reliability for Gazepoint pupil outcomes", "topics": [ "audit_gazepoint_pupil_reliability" ] }, { "page": "audit_gazepoint_stimulus_luminance", 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analysis-decision audit", "topics": [ "create_gazepoint_analysis_decision_audit" ] }, { "page": "create_gazepoint_markovchain_object", "title": "Create a Gazepoint AOI Markov-chain object", "topics": [ "create_gazepoint_markovchain_object" ] }, { "page": "create_gazepoint_master", "title": "Create a master long-format dataset from Gazepoint all-gaze data", "topics": [ "create_gazepoint_master" ] }, { "page": "create_gazepoint_preprocessing_multiverse", "title": "Create a Gazepoint preprocessing multiverse", "topics": [ "create_gazepoint_preprocessing_multiverse" ] }, { "page": "create_gazepoint_preprocessing_registry", "title": "Create a Gazepoint pupil-preprocessing registry", "topics": [ "create_gazepoint_preprocessing_registry" ] }, { "page": "create_gazepoint_report", "title": "Create a Gazepoint HTML diagnostic report", "topics": [ "create_gazepoint_report" ] }, { "page": "create_gazepoint_reporting_checklist", "title": "Create a Gazepoint reporting checklist", "topics": [ "create_gazepoint_reporting_checklist" ] }, { "page": "diagnose_gazepoint_gamm", "title": "Diagnose GAM and BAM models", "topics": [ "diagnose_gazepoint_gamm" ] }, { "page": "diagnose_gazepoint_glmm", "title": "Diagnose GLMM, LMM, and GLM models", "topics": [ "diagnose_gazepoint_glmm" ] }, { "page": "estimate_gazepoint_divergence_point", "title": "Estimate a bootstrapped divergence point between two Gazepoint time courses", "topics": [ "estimate_gazepoint_divergence_point" ] }, { "page": "export_gazepoint_master_audit", "title": "Export a Gazepoint master table, audit tables, and validation tables", "topics": [ "export_gazepoint_master_audit" ] }, { "page": "export_gazepoint_model_tables", "title": "Export manuscript-ready model tables", "topics": [ "export_gazepoint_model_tables" ] }, { "page": "export_gazepoint_tables", "title": "Export Gazepoint analysis tables to CSV files", "topics": [ "export_gazepoint_tables" ] }, { "page": "fit_gazepoint_aoi_gamm", "title": "Fit AOI time-course GAMMs", "topics": [ "fit_gazepoint_aoi_gamm" ] }, { "page": "fit_gazepoint_aoi_model_sensitivity", "title": "Fit AOI-window model-family sensitivity checks", "topics": [ "fit_gazepoint_aoi_model_sensitivity" ] }, { "page": "fit_gazepoint_aoi_window_glmm", "title": "Fit an AOI-window binomial GLMM", "topics": [ "fit_gazepoint_aoi_window_glmm" ] }, { "page": "fit_gazepoint_gca", "title": "Fit a Gazepoint Growth Curve Analysis mixed model", "topics": [ "fit_gazepoint_gca" ] }, { "page": "fit_gazepoint_pupil_gamm", "title": "Fit a Gazepoint pupil GAMM", "topics": [ "fit_gazepoint_pupil_gamm" ] }, { "page": "fit_gazepoint_pupil_pfe_gamm", "title": "Fit a gaze-position-adjusted pupil GAMM sensitivity model", "topics": [ "fit_gazepoint_pupil_pfe_gamm" ] }, { "page": "fit_gazepoint_pupil_window_lmm", "title": "Fit confirmatory pupil-window linear mixed models", "topics": [ "fit_gazepoint_pupil_window_lmm" ] }, { "page": "fit_gazepoint_pupil_window_sensitivity", "title": "Run sensitivity models for confirmatory pupil-window analyses", "topics": [ "fit_gazepoint_pupil_window_sensitivity" ] }, { "page": "fit_gazepoint_transition_count_nb_sensitivity", "title": "Fit optional negative-binomial transition-count sensitivity models", "topics": [ "fit_gazepoint_transition_count_nb_sensitivity" ] }, { "page": "flag_gazepoint_pupil", "title": "Flag invalid, missing, implausible, and outlying Gazepoint pupil samples", "topics": [ "flag_gazepoint_pupil" ] }, { "page": "flag_gazepoint_pupil_artifacts", "title": "Flag Gazepoint pupil artifacts before interpolation", "topics": [ "flag_gazepoint_pupil_artifacts" ] }, { "page": "flag_gazepoint_pupil_hampel", "title": "Flag pupil artifacts with a Hampel filter", "topics": [ "flag_gazepoint_pupil_hampel" ] }, { "page": "flag_tracking_quality", "title": "Flag low-quality Gazepoint recordings", "topics": [ "flag_tracking_quality" ] }, { "page": "gazepoint_example_aoi_geometry", "title": "Example AOI geometry table", "topics": [ "gazepoint_example_aoi_geometry" ] }, { "page": "gazepoint_example_aoi_windows", "title": "Example AOI-window summary table", "topics": [ "gazepoint_example_aoi_windows" ] }, { "page": "gazepoint_example_fixations", "title": "Example Gazepoint fixation table", "topics": [ "gazepoint_example_fixations" ] }, { "page": "gazepoint_example_master", "title": "Example Gazepoint master table", "topics": [ "gazepoint_example_master" ] }, { "page": "gazepoint_example_pupil_windows", "title": "Example pupil-window summary table", "topics": [ "gazepoint_example_pupil_windows" ] }, { "page": "inspect_gazepoint_columns", "title": "Inspect Gazepoint columns", "topics": [ "inspect_gazepoint_columns" ] }, { "page": "interpolate_gazepoint_pupil", "title": "Interpolate short missing gaps in Gazepoint pupil data", "topics": [ "interpolate_gazepoint_pupil" ] }, { "page": "interpolate_gazepoint_pupil_pchip", "title": "Interpolate Gazepoint pupil data using PCHIP", "topics": [ "interpolate_gazepoint_pupil_pchip" ] }, { "page": "plot_gazepoint_aoi_gamm", "title": "Plot AOI time-course GAMM results", "topics": [ "plot_gazepoint_aoi_gamm" ] }, { "page": "plot_gazepoint_aoi_transition_matrix", "title": "Plot Gazepoint AOI transition matrix", "topics": [ "plot_gazepoint_aoi_transition_matrix" ] }, { "page": "plot_gazepoint_aoi_verification", "title": "Plot AOI geometry for visual verification", "topics": [ "plot_gazepoint_aoi_verification" ] }, { "page": "plot_gazepoint_cluster_results", "title": "Plot cluster-based permutation results", "topics": [ "plot_gazepoint_cluster_results" ] }, { "page": "plot_gazepoint_gca", "title": "Plot observed and fitted Growth Curve Analysis trajectories", "topics": [ "plot_gazepoint_gca" ] }, { "page": "plot_gazepoint_model_predictions", "title": "Plot observed summaries and model-implied predictions", "topics": [ "plot_gazepoint_model_predictions" ] }, { "page": "plot_gazepoint_multiverse_results", "title": "Plot Gazepoint preprocessing multiverse results", "topics": [ "plot_gazepoint_multiverse_results" ] }, { "page": "plot_gazepoint_pupil_preprocessing", "title": "Plot Gazepoint pupil preprocessing for one trial", "topics": [ "plot_gazepoint_pupil_preprocessing" ] }, { "page": "plot_gazepoint_pupil_status", "title": "Plot Gazepoint pupil preprocessing status", "topics": [ "plot_gazepoint_pupil_status" ] }, { "page": "plot_gazepoint_pupil_timecourse", "title": "Plot Gazepoint pupil time course", "topics": [ "plot_gazepoint_pupil_timecourse" ] }, { "page": "plot_sampling_rate", "title": "Plot Gazepoint sampling-rate diagnostics", "topics": [ "plot_sampling_rate" ] }, { "page": "plot_tracking_quality", "title": "Plot Gazepoint tracking-quality diagnostics", "topics": [ "plot_tracking_quality" ] }, { "page": "plot_transition_heatmap", "title": "Plot an AOI transition heatmap", "topics": [ "plot_transition_heatmap" ] }, { "page": "prepare_gazepoint_aoi_gamm_data", "title": "Prepare AOI time-course data for GAMM analysis", "topics": [ "prepare_gazepoint_aoi_gamm_data" ] }, { "page": "prepare_gazepoint_aoi_glmm_data", "title": "Prepare AOI-window data for binomial GLMMs", "topics": [ "prepare_gazepoint_aoi_glmm_data" ] }, { "page": "prepare_gazepoint_aoi_sequences", "title": "Prepare Gazepoint AOI sequences", "topics": [ "prepare_gazepoint_aoi_sequences" ] }, { "page": "prepare_gazepoint_cluster_data", "title": "Prepare time-course data for cluster-based permutation tests", "topics": [ "prepare_gazepoint_cluster_data" ] }, { "page": "prepare_gazepoint_eyetools_data", "title": "Prepare Gazepoint master data for eyetools-style workflows", "topics": [ "prepare_gazepoint_eyetools_data" ] }, { "page": "prepare_gazepoint_eyetrackingr_data", "title": "Prepare Gazepoint master data for eyetrackingR-style workflows", "topics": [ "prepare_gazepoint_eyetrackingr_data" ] }, { "page": "prepare_gazepoint_fixation_aligned_data", "title": "Prepare fixation- or saccade-contingent aligned Gazepoint data", "topics": [ "prepare_gazepoint_fixation_aligned_data" ] }, { "page": "prepare_gazepoint_gazer_data", "title": "Prepare Gazepoint master data for gazer-style workflows", "topics": [ "prepare_gazepoint_gazer_data" ] }, { "page": "prepare_gazepoint_gca_data", "title": "Prepare Gazepoint Growth Curve Analysis data", "topics": [ "prepare_gazepoint_gca_data" ] }, { "page": "prepare_gazepoint_hmm_data", "title": "Prepare Gazepoint AOI/state sequences for HMM-style workflows", "topics": [ "prepare_gazepoint_hmm_data" ] }, { "page": "prepare_gazepoint_pupil_gamm_data", "title": "Prepare Gazepoint pupil GAMM data", "topics": [ "prepare_gazepoint_pupil_gamm_data" ] }, { "page": "prepare_gazepoint_pupil_window_model_data", "title": "Prepare pupil-window data for confirmatory mixed models", "topics": [ "prepare_gazepoint_pupil_window_model_data" ] }, { "page": "prepare_gazepoint_pupillometryr_data", "title": "Prepare Gazepoint master data for pupillometryR-style workflows", "topics": [ "prepare_gazepoint_pupillometryr_data" ] }, { "page": "prepare_gazepoint_semimarkov_data", "title": "Prepare Gazepoint AOI sequences for semi-Markov modelling", "topics": [ "prepare_gazepoint_semimarkov_data" ] }, { "page": "read_gazepoint", "title": "Read a Gazepoint all-gaze or fixation CSV export", "topics": [ "read_gazepoint" ] }, { "page": "read_gazepoint_folder", "title": "Read multiple Gazepoint CSV exports from a folder", "topics": [ "read_gazepoint_folder" ] }, { "page": "read_gazepoint_summary", "title": "Read a Gazepoint Analysis Data Summary export", "topics": [ "read_gazepoint_summary" ] }, { "page": "recalibrate_gazepoint_gaze", "title": "Offline gaze recalibration using known target coordinates", "topics": [ "recalibrate_gazepoint_gaze" ] }, { "page": "recommend_gazepoint_exclusions", "title": "Recommend trial and participant exclusions", "topics": [ "recommend_gazepoint_exclusions" ] }, { "page": "run_gazepoint_aoi_multiverse", "title": "Run a Gazepoint AOI preprocessing multiverse", "topics": [ "run_gazepoint_aoi_multiverse" ] }, { "page": "run_gazepoint_cluster_permutation", "title": "Run paired cluster-based permutation tests", "topics": [ "run_gazepoint_cluster_permutation" ] }, { "page": "run_gazepoint_eyetools_fixation_detection", "title": "Run optional eyetools fixation and saccade detection", "topics": [ "run_gazepoint_eyetools_fixation_detection" ] }, { "page": "run_gazepoint_gazer_crosscheck", "title": "Run an optional gazeR pupil-preprocessing cross-check", "topics": [ "run_gazepoint_gazer_crosscheck" ] }, { "page": "run_gazepoint_model_leave_one_out", "title": "Run leave-one-unit model sensitivity analysis", "topics": [ "run_gazepoint_model_leave_one_out" ] }, { "page": "run_gazepoint_pupil_multiverse", "title": "Run a Gazepoint pupil preprocessing multiverse", "topics": [ "run_gazepoint_pupil_multiverse" ] }, { "page": "run_gazepoint_workflow", "title": "Run a complete Gazepoint analysis workflow", "topics": [ "run_gazepoint_workflow" ] }, { "page": "save_gazepoint_plots", "title": "Save standard Gazepoint diagnostic plots", "topics": [ "save_gazepoint_plots" ] }, { "page": "smooth_gazepoint_pupil", "title": "Smooth Gazepoint pupil data", "topics": [ "smooth_gazepoint_pupil" ] }, { "page": "standardise_gazepoint_names", "title": "Standardise Gazepoint column names", "topics": [ "standardise_gazepoint_names" ] }, { "page": "summarise_aoi_samples", "title": "Summarise sample-level AOI viewing", "topics": [ "summarise_aoi_samples" ] }, { "page": "summarise_fixations", "title": "Summarise fixation-level AOI metrics", "topics": [ "summarise_fixations" ] }, { "page": "summarise_gazepoint_aoi", "title": "Summarise Gazepoint AOI metrics from gaze and fixation exports", "topics": [ "summarise_gazepoint_aoi" ] }, { "page": "summarise_gazepoint_aoi_entries", "title": "Summarise Gazepoint AOI entry episodes", "topics": [ "summarise_gazepoint_aoi_entries" ] }, { "page": "summarise_gazepoint_aoi_transitions", "title": "Summarise Gazepoint AOI transition features", "topics": [ "summarise_gazepoint_aoi_transitions" ] }, { "page": "summarise_gazepoint_aoi_trial_features", "title": "Summarise Gazepoint AOI trial features", "topics": [ "summarise_gazepoint_aoi_trial_features" ] }, { "page": "summarise_gazepoint_aoi_windows", "title": "Summarise Gazepoint AOI samples within predefined time windows", "topics": [ "summarise_gazepoint_aoi_windows" ] }, { "page": "summarise_gazepoint_clusters", "title": "Summarise cluster-based permutation results", "topics": [ "summarise_gazepoint_clusters" ] }, { "page": "summarise_gazepoint_emmeans", "title": "Summarise estimated marginal means and contrasts", "topics": [ "summarise_gazepoint_emmeans" ] }, { "page": "summarise_gazepoint_fixation_trials", "title": "Summarise Gazepoint fixation trial features", "topics": [ "summarise_gazepoint_fixation_trials" ] }, { "page": "summarise_gazepoint_fixed_effects", "title": "Summarise fixed effects from fitted models", "topics": [ "summarise_gazepoint_fixed_effects" ] }, { "page": "summarise_gazepoint_multiverse_results", "title": "Summarise Gazepoint preprocessing multiverse results", "topics": [ "summarise_gazepoint_multiverse_results" ] }, { "page": "summarise_gazepoint_pupil", "title": "Summarise Gazepoint pupil data", "topics": [ "summarise_gazepoint_pupil" ] }, { "page": "summarise_gazepoint_pupil_trial_features", "title": "Summarise Gazepoint pupil trial-level features", "topics": [ "summarise_gazepoint_pupil_trial_features" ] }, { "page": "summarise_gazepoint_pupil_windows", "title": "Summarise Gazepoint pupil responses within time windows", "topics": [ "summarise_gazepoint_pupil_windows" ] }, { "page": "summarise_gazepoint_workflow", "title": "Summarise a Gazepoint workflow result", "topics": [ "summarise_gazepoint_workflow" ] }, { "page": "summarise_tracking_quality", "title": "Summarise Gazepoint tracking quality", "topics": [ 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