{ "_id": "6a2a70bc7b7a29ca60043960", "Package": "gMCP", "Type": "Package", "Title": "Graph Based Multiple Comparison Procedures", "Version": "0.8-17", "Authors@R": "c(person(\"Kornelius\", \"Rohmeyer\", role = c(\"aut\", \"cre\"), email = \"rohmeyer@small-projects.de\"),\nperson(\"Florian\", \"Klinglmueller\", role = \"aut\", email = \"float@lefant.net\"))", "Maintainer": "Kornelius Rohmeyer ", "Description": "Functions and a graphical user interface for graphical\ndescribed multiple test procedures.", "VignetteBuilder": "knitr", "SystemRequirements": "Java (>= 5.0)", "License": "GPL (>= 2)", "URL": "https://github.com/kornl/gMCP", "BugReports": "https://github.com/kornl/gMCP/issues", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "Collate": "'analysis.R' 'calcPower.R' 'graphMCP.R' 'closure.R'\n'convertFromOldClassDefinition.R' 'doRUnitTests.R'\n'exampleGraphs.R' 'gACT-internal.R' 'gMCP.R' 'gMCP.extended.R'\n'gPAD.R' 'generateBounds.R' 'generatePvals.R' 'generateTest.R'\n'generateWeights.R' 'graph2latex.R' 'graphTest.R' 'helperGUI.R'\n'initJava.R' 'matrix2graph.R' 'misc.R' 'modifyGraphs.R'\n'onLoad.R' 'plotCI.R' 'powerPlot.R' 'rqmvnorm.R' 'sampSize.R'\n'startGUIs.R' 'subVariables.R'", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-11 08:20:11 UTC", "User": "root" }, "Author": "Kornelius Rohmeyer [aut, cre], Florian Klinglmueller [aut]", "Config/pak/sysreqs": "default-jdk", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2024-03-26 02:33:53 UTC", "RemoteUrl": "https://github.com/cran/gMCP", "RemoteRef": "HEAD", "RemoteSha": "ed5d11cb052fe412d5da1bb65d889a6455939623", "MD5sum": "b772439d93066e1c0006889e90254f67", "_user": "cran", "_type": "src", "_file": "gMCP_0.8-17.tar.gz", "_fileid": "e3137679224005516d9fa8f868d29af2accfa96b36ecad902c7fe2b5f2f7c4e0", "_filesize": 3035065, "_sha256": "e3137679224005516d9fa8f868d29af2accfa96b36ecad902c7fe2b5f2f7c4e0", "_created": "2026-06-11T08:20:11.000Z", "_published": "2026-06-11T08:24:28.078Z", "_distro": "noble", "_jobs": [ { "job": 80752339664, "time": 215, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7558700111" }, { "job": 80752339702, "time": 192, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7558691751" }, { "job": 80752339655, "time": 169, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7558682672" }, { "job": 80752339697, "time": 169, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7558683183" }, { "job": 80751556031, "time": 260, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7558619952" }, { "job": 80752339662, "time": 144, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7558673159" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/27333469905", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/gMCP", "_commit": { "id": "ed5d11cb052fe412d5da1bb65d889a6455939623", "author": "Kornelius Rohmeyer ", "committer": "cran-robot ", "message": "version 0.8-17\n", "time": 1711420433 }, "_maintainer": { "name": "Kornelius Rohmeyer", "email": "rohmeyer@small-projects.de", "login": "kornl", "description": "", "uuid": 3704808 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0.0", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "MASS", "role": "Imports" }, { "package": "PolynomF", "role": "Imports" }, { "package": "multcomp", "version": ">= 1.1", "role": "Imports" }, { "package": "mvtnorm", "role": "Imports" }, { "package": "Matrix", "role": "Imports" }, { "package": "CommonJavaJars", "version": ">= 1.1.0", "role": "Imports" }, { "package": "rJava", "version": ">= 0.6-3", "role": "Imports" }, { "package": "JavaGD", "role": "Imports" }, { "package": "xlsxjars", "version": ">= 0.6.1", "role": "Imports" }, { "package": "stats4", "role": "Imports" }, { "package": "RUnit", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "graph", "version": ">= 1.20", "role": "Suggests" }, { "package": "mutoss", "role": "Suggests" }, { "package": "boot", "role": "Suggests" }, { "package": "coin", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 2, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "kornl", "count": 47, "uuid": 3704808 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 701, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/gMCP" }, "_mentions": 3, "_devurl": "https://github.com/kornl/gmcp", "_searchresults": 139, "_topics": [ "openjdk" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/gMCP.html", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_homeurl": "https://github.com/kornl/gmcp", "_realowner": "kornl", "_cranurl": false, "_releases": [ { "version": "0.2-4", "date": "2010-09-30" }, { "version": "0.3-0", "date": "2010-10-01" }, { "version": "0.3-1", "date": "2010-10-02" }, { "version": "0.3-2", "date": "2010-10-08" }, { "version": "0.3-3", "date": "2010-11-15" }, { "version": "0.3-4", "date": "2010-11-26" }, { "version": "0.3-5", "date": "2011-03-13" }, { "version": "0.3-6", "date": "2011-03-15" }, { "version": "0.4-0", "date": "2011-03-21" }, { "version": "0.5-0", "date": "2011-03-28" }, { "version": "0.6-0", "date": "2011-04-06" }, { "version": "0.6-1", "date": "2011-04-09" }, { "version": "0.6-2", "date": "2011-04-24" }, { "version": "0.6-3", "date": "2011-05-09" }, { "version": "0.6-4", "date": "2011-05-11" }, { "version": "0.6-5", "date": "2011-05-26" }, { "version": "0.6-6", "date": "2011-07-04" }, { "version": "0.7-0", "date": "2011-08-26" }, { "version": "0.7-1", "date": "2011-11-21" }, { "version": "0.7-2", "date": "2011-12-11" }, { "version": "0.7-3", "date": "2012-01-16" }, { "version": "0.7-4", "date": "2012-01-22" }, { "version": "0.7-5", "date": "2012-01-29" }, { "version": "0.7-6", "date": "2012-02-13" }, { "version": "0.7-7", "date": "2012-02-17" }, { "version": "0.7-8", "date": "2012-03-06" }, { "version": "0.7-9", "date": "2012-05-07" }, { "version": "0.7-10", "date": "2012-06-15" }, { "version": "0.7-11", "date": "2012-07-21" }, { "version": "0.7-12", "date": "2012-08-02" }, { "version": "0.8-0", "date": "2012-10-14" }, { "version": "0.8-1", "date": "2013-04-06" }, { "version": "0.8-3", "date": "2013-06-14" }, { "version": "0.8-4", "date": "2013-07-15" }, { "version": "0.8-5", "date": "2013-07-18" }, { "version": "0.8-6", "date": "2014-02-17" }, { "version": "0.8-7", "date": "2014-08-26" }, { "version": "0.8-8", "date": "2014-10-02" }, { "version": "0.8-9", "date": "2015-08-10" }, { "version": "0.8-10", "date": "2015-08-31" }, { "version": "0.8-11", "date": "2017-11-13" }, { "version": "0.8-12", "date": "2017-12-04" }, { "version": "0.8-13", "date": "2017-12-11" }, { "version": "0.8-14", "date": "2018-07-09" }, { "version": "0.8-15", "date": "2020-03-23" }, { "version": "0.8-16", "date": "2023-11-29" }, { "version": "0.8-17", "date": "2024-03-26" } ], "_exports": [ "BauerEtAl2001", "bdiagNA", "bonferroni.test", "bonferroni.trimmed.simes.test", "BonferroniHolm", "BretzEtAl2009a", "BretzEtAl2009b", "BretzEtAl2009c", "BretzEtAl2011", "calcPower", "corMatWizard", "cycleGraph", "doInterim", "edgeAttr", "edgeAttr<-", "Entangled1Maurer2012", "Entangled2Maurer2012", "extractPower", "fallback", "Ferber2011", "FerberTimeDose2011", "fixedSequence", "generalSuccessive", "generateBounds", "generatePvals", "generateTest", "generateWeights", "getJavaInfo", "getMatrices", "getMatrix", "getNodes", "getRejected", "getWeights", "getXCoordinates", "getYCoordinates", "gMCP", "gMCP.extended", "gMCPReport", "graph2latex", "graph2matrix", "graphAnalysis", "graphGUI", "graphTest", "HommelEtAl2007", "HommelEtAl2007Simple", "HungEtWang2010", "HuqueAloshEtBhore2011", "improvedFallbackI", "improvedFallbackII", "improvedParallelGatekeeping", "joinGraphs", "matrix2graph", "MaurerEtAl1995", "nodeAttr", "nodeAttr<-", "parallelGatekeeping", "parametric.test", "placeNodes", "plot", "plotSimCI", "print", "rejectNode", "replaceVariables", "rqmvnorm", "sampSize", "secondStageTest", "setEdge", "setRejected<-", "setWeights", "simConfint", "simes.on.subsets.test", "simes.test", "simpleSuccessiveI", "simpleSuccessiveII", "subgraph", "substituteEps", "truncatedHolm", "unitTestsGMCP", "WangTing2014" ], "_datasets": [ { "name": "hydroquinone", "title": "Hydroquinone Mutagenicity Assay", "object": "hydroquinone", "file": "hydroquinone.rda", "class": [ "data.frame" ], "fields": [ "group", "micronuclei" ], "rows": 31, "table": true, "tojson": true }, { "name": "simvastatin", "title": "Simvastatin and Colesevelam Treatment in Patients with Primary Hypercholesterolemia", "object": "simvastatin", "file": "simvastatin.rda", "class": [ "data.frame" ], "fields": [ "group", "sampleSize", "means", "sd", "adverseEvents" ], "rows": 4, "table": true, "tojson": true } ], "_help": [ { "page": "gMCP-package", "title": "Graphical described Multiple Comparison Procedures", "topics": [ "gMCP-package" ] }, { "page": "bdiagNA", "title": "Create a Block Diagonal Matrix with NA outside the diagonal", "topics": [ "bdiagNA" ] }, { "page": "bonferroni.test", "title": "Weighted Bonferroni-test", "topics": [ "bonferroni.test" ] }, { "page": "bonferroni.trimmed.simes.test", "title": "Trimmed Simes test for intersections of two hypotheses and otherwise weighted Bonferroni-test", "topics": [ "bonferroni.trimmed.simes.test" ] }, { "page": "calcPower", "title": "Calculate power values", "topics": [ "calcPower" ] }, { "page": "corMatWizard", "title": "Graphical User Interface for the creation of correlation matrices", "topics": [ "corMatWizard" ] }, { "page": "doInterim", "title": "EXPERIMENTAL: Evaluate conditional errors at interim for a pre-planned graphical procedure", "topics": [ "doInterim" ] }, { "page": "entangled", "title": "Class entangledMCP", "topics": [ "entangledMCP", "entangledMCP-class", "getMatrices", "getMatrices,entangledMCP-method", "getNodes,entangledMCP-method", "getRejected,entangledMCP-method", "getWeights,entangledMCP-method", "getXCoordinates,entangledMCP-method", "getYCoordinates,entangledMCP-method", "print,entangledMCP-method" ] }, { "page": "exampleGraphs", "title": "Functions that create different example graphs", "topics": [ "BauerEtAl2001", "BonferroniHolm", "BretzEtAl2009a", "BretzEtAl2009b", "BretzEtAl2009c", "BretzEtAl2011", "cycleGraph", "Entangled1Maurer2012", "Entangled2Maurer2012", "exampleGraphs", "fallback", "Ferber2011", "FerberTimeDose2011", "fixedSequence", "generalSuccessive", "HommelEtAl2007", "HommelEtAl2007Simple", "HungEtWang2010", "HuqueAloshEtBhore2011", "improvedFallbackI", "improvedFallbackII", "improvedParallelGatekeeping", "MaurerEtAl1995", "parallelGatekeeping", "simpleSuccessiveI", "simpleSuccessiveII", "truncatedHolm", "WangTing2014" ] }, { "page": "extractPower", "title": "Calculate power values", "topics": [ "extractPower" ] }, { "page": "generateBounds", "title": "generateBounds", "topics": [ "generateBounds" ] }, { "page": "generatePvals", "title": "generatePvals", "topics": [ "generatePvals" ] }, { "page": "generateTest", "title": "generateTest", "topics": [ "generateTest" ] }, { "page": "generateWeights", "title": "generateWeights", "topics": [ "generateWeights" ] }, { "page": "getJavaInfo", "title": "Get Memory and Runtime Info from JVM", "topics": [ "getJavaInfo" ] }, { "page": "gMCP", "title": "Graph based Multiple Comparison Procedures", "topics": [ "gMCP" ] }, { "page": "gMCP.extended", "title": "Graph based Multiple Comparison Procedures", "topics": [ "gMCP.extended" ] }, { "page": "gMCPReport", "title": "Automatic Generation of gMCP Reports", "topics": [ "gMCPReport" ] }, { "page": "gMCPResult", "title": "Class gMCPResult", "topics": [ "getRejected,gMCPResult-method", "getWeights,gMCPResult-method", "gMCPResult", "gMCPResult-class", "plot,gMCPResult,ANY-method", "plot,gMCPResult-method", "print,gMCPResult-method" ] }, { "page": "gPADInterim", "title": "Class gPADInterim", "topics": [ "getRejected,gPADInterim-method", "getWeights,gPADInterim-method", "gPADInterim", "gPADInterim-class", "plot,gPADInterim-method", "print,gPADInterim-method" ] }, { "page": "graph2latex", "title": "Graph2LaTeX", "topics": [ "graph2latex" ] }, { "page": "graphAnalysis", "title": "Analysis of a gMCP-Graph", "topics": [ "graphAnalysis" ] }, { "page": "graphGUI", "title": "Graphical User Interface for graphical described multiple comparison procedures", "topics": [ "graphGUI" ] }, { "page": "graphMCP", "title": "Class graphMCP", "topics": [ "edgeAttr", "edgeAttr,graphMCP,character,character,character-method", "edgeAttr<-", "edgeAttr<-,graphMCP,character,character,character-method", "getMatrix", "getMatrix,graphMCP-method", "getNodes", "getNodes,graphMCP-method", "getRejected", "getRejected,graphMCP-method", "getWeights", "getWeights,graphMCP-method", "getXCoordinates", "getXCoordinates,graphMCP-method", "getYCoordinates", "getYCoordinates,graphMCP-method", "graphMCP", "graphMCP-class", "nodeAttr", "nodeAttr,graphMCP,character,character-method", "nodeAttr<-", "nodeAttr<-,graphMCP,character,character-method", "plot,graphMCP,ANY-method", "plot,graphMCP-method", "print,graphMCP-method", "setEdge", "setEdge,character,character,graphMCP,character-method", "setEdge,character,character,graphMCP,numeric-method", "setRejected<-", "setRejected<-,graphMCP-method", "setWeights", "setWeights,graphMCP-method" ] }, { "page": "graphTest", "title": "Multiple testing using graphs", "topics": [ "graphTest" ] }, { "page": "hydroquinone", "title": "Hydroquinone Mutagenicity Assay", "topics": [ "hydroquinone" ] }, { "page": "joinGraphs", "title": "Joins two graphMCP objects", "topics": [ "joinGraphs" ] }, { "page": "matrix2graph", "title": "Matrix2Graph and Graph2Matrix", "topics": [ "graph2matrix", "matrix2graph" ] }, { "page": "parametric.test", "title": "Weighted parametric test", "topics": [ "parametric.test" ] }, { "page": "placeNodes", "title": "Placement of graph nodes", "topics": [ "placeNodes" ] }, { "page": "plotSimCI", "title": "Plot confidence intervals", "topics": [ "plotSimCI" ] }, { "page": "rejectNode", "title": "Rejects a node/hypothesis and updates the graph accordingly.", "topics": [ "rejectNode" ] }, { "page": "replaceVariables", "title": "Replaces variables in a general graph with specified numeric values", "topics": [ "replaceVariables" ] }, { "page": "rqmvnorm", "title": "Random sample from the multivariate normal distribution", "topics": [ "rqmvnorm" ] }, { "page": "sampSize", "title": "Sample size calculations", "topics": [ "sampSize" ] }, { "page": "sampSizeCore", "title": "Function for sample size calculation", "topics": [ "sampSizeCore" ] }, { "page": "secondStageTest", "title": "EXPERIMENTAL: Construct a valid level alpha test for the second stage of an adaptive design that is based on a pre-planned graphical MCP", "topics": [ "secondStageTest" ] }, { "page": "confint", "title": "Simultaneous confidence intervals for sequentially rejective multiple test procedures", "topics": [ "simConfint", "simConfint,graphMCP-method" ] }, { "page": "simes.on.subsets.test", "title": "Simes on subsets, otherwise Bonferroni", "topics": [ "simes.on.subsets.test" ] }, { "page": "simes.test", "title": "Weighted Simes test", "topics": [ "simes.test" ] }, { "page": "simvastatin", "title": "Simvastatin and Colesevelam Treatment in Patients with Primary Hypercholesterolemia", "topics": [ "simvastatin" ] }, { "page": "subgraph", "title": "Get a subgraph", "topics": [ "subgraph" ] }, { "page": "substituteEps", "title": "Substitute Epsilon", "topics": [ "substituteEps" ] }, { "page": "unitTestsGMCP", "title": "Run the R unit (and optional the JUnit) test suite for gMCP", "topics": [ "unitTestsGMCP" ] }, { "page": "weighted.test.functions", "title": "Weighted Test Functions for use with gMCP", "topics": [ "weighted.test.functions" ] } ], "_rundeps": [ "codetools", "CommonJavaJars", "JavaGD", "lattice", "MASS", "Matrix", "multcomp", "mvtnorm", "PolynomF", "Rcpp", "rJava", "sandwich", "survival", "TH.data", "xlsxjars", "zoo" ], "_sysdeps": [ { "shlib": "libjvm", "package": "openjdk-21-jre-headless", "headers": "openjdk-21-jre-headless", "source": "openjdk", "version": "21.0.11+10-1~24.04.2", "name": "openjdk", "homepage": "https://openjdk.java.net/", "description": "OpenJDK Java runtime, using Hotspot JIT (headless)" } ], "_vignettes": [ { "source": "gMCP.Rnw", "filename": "gMCP.pdf", "title": "A Graphical Approach to Weighted Multiple Test Procedures", "engine": "knitr::knitr", "headings": [ "Introduction", "Creating Weighted Graphs", "The sequentially rejective MTP", "Weighted parametric and Simes tests", "Epsilon edges", "Entangled graphs", "Power Simulations", "Options and Import/Export", "Case Studies", "Appendix - Example graphs", "Appendix - Multiple Testing", "Appendix - Graph Theory Basics" ], "created": "2013-07-15", "modified": "2017-11-13 11:55:17", "commits": 7 }, { "source": "parametric.Rnw", "filename": "parametric.pdf", "title": "Graphical approaches for multiple endpoint problems using weighted parametric tests", "engine": "knitr::knitr", "headings": [ "Introduction", "Creating Graphs", "Testing" ], "created": "2013-07-15", "modified": "2014-10-02 00:00:00", "commits": 5 } ], "_score": 4.699317301021383, "_indexed": false, "_nocasepkg": "gmcp", "_universes": [ "cran" ], "_indexurl": "https://kornl.r-universe.dev/gMCP", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.8-17", "date": "2026-06-11T08:23:26.000Z", "distro": "noble", "arch": "aarch64", "commit": "ed5d11cb052fe412d5da1bb65d889a6455939623", "fileid": "c20dac26c90218c8a1461c6cb53b8b579141128f8100d81e997ff0824e1599c1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27333469905" }, { "r": "4.7.0", "os": "linux", "version": "0.8-17", "date": "2026-06-11T08:22:54.000Z", "distro": "noble", "arch": "x86_64", "commit": "ed5d11cb052fe412d5da1bb65d889a6455939623", "fileid": "fac46a00662ef470dc5df89546a13bd393c2b1655574d3268bd155e21ec7707c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27333469905" }, { "r": "4.6.0", "os": "linux", "version": "0.8-17", "date": "2026-06-11T08:22:41.000Z", "distro": "noble", "arch": "aarch64", "commit": "ed5d11cb052fe412d5da1bb65d889a6455939623", "fileid": "30e19122b177b06eed00e53f71e8f234d88b586d81722f5543c103339012f788", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27333469905" }, { "r": "4.6.0", "os": "linux", "version": "0.8-17", "date": "2026-06-11T08:22:31.000Z", "distro": "noble", "arch": "x86_64", "commit": "ed5d11cb052fe412d5da1bb65d889a6455939623", "fileid": "842a6503f6a09b46be71bf9ae716e95a285437977e60b20aff811b72fb1f278c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27333469905" }, { "r": "4.6.0", "os": "wasm", "version": "0.8-17", "date": "2026-06-11T08:22:57.000Z", "arch": "emscripten", "commit": "ed5d11cb052fe412d5da1bb65d889a6455939623", "fileid": "5b49598242556ebe689194381035f4313f9928f72bdaad63401a7f99a427a8ca", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/27333469905" } ] }