{
  "_id": "6a10548dacfb0bcc41ca215d",
  "Package": "fluorojip",
  "Type": "Package",
  "Title": "Analysis of Chlorophyll a Fluorescence Transient Parameters",
  "Version": "0.1.1",
  "Authors@R": "c(\nperson(given = c(\"Joao\", \"Everthon\"), family = \"da Silva Ribeiro\",\nemail = \"everthonribeiro10@gmail.com\",\nrole = c(\"aut\", \"cre\")),\nperson(given = c(\"Toshik\", \"Iarley\"), family = \"da Silva\",\nrole = \"aut\"),\nperson(given = c(\"Ronald\", \"Maldonado\"), family = \"Rodriguez\",\nrole = \"aut\")\n)",
  "Description": "Computes chlorophyll a fluorescence transient parameters\nfrom fluorescence summary data, including minimum and maximum\nfluorescence, selected transient steps, and area. Provides\nstandard photosynthetic performance indices and fluxes per\nreaction center and per cross section. Includes helpers to read\nexported trace tables in supported 'csv' formats and validation\nworkflows based on bundled example files, as well as\nvisualization tools and an interactive 'shiny' interface. The\nimplemented calculations are based on Strasser et al. (2004)\n<doi:10.1007/978-1-4020-3218-9_12> and Stirbet and Govindjee\n(2011) <doi:10.1016/j.jphotobiol.2010.12.010>.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "LazyData": "true",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-09 08:25:46 UTC",
    "User": "root"
  },
  "Author": "Joao Everthon da Silva Ribeiro [aut, cre], Toshik Iarley da\nSilva [aut], Ronald Maldonado Rodriguez [aut]",
  "Maintainer": "Joao Everthon da Silva Ribeiro\n<everthonribeiro10@gmail.com>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-04-09 09:43:47 UTC",
  "RemoteUrl": "https://github.com/cran/fluorojip",
  "RemoteRef": "HEAD",
  "RemoteSha": "2a9e6adbac9cc1b265293751a4632047029b9c20",
  "MD5sum": "9112c6b34a1ff4fdd150c0a8dc57a450",
  "_user": "cran",
  "_type": "src",
  "_file": "fluorojip_0.1.1.tar.gz",
  "_fileid": "f3a6512f0b822568300627167068346de16c31d893ba4f392ba52d52b7165d92",
  "_filesize": 677143,
  "_sha256": "f3a6512f0b822568300627167068346de16c31d893ba4f392ba52d52b7165d92",
  "_created": "2026-05-09T08:25:46.000Z",
  "_published": "2026-05-22T13:05:17.195Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77385229059,
      "time": 122,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6894309345"
    },
    {
      "job": 77385229218,
      "time": 130,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6894310072"
    },
    {
      "job": 77385229031,
      "time": 187,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6894298510"
    },
    {
      "job": 77385228711,
      "time": 120,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7161184475"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/25596414049",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/fluorojip",
  "_commit": {
    "id": "2a9e6adbac9cc1b265293751a4632047029b9c20",
    "author": "Joao Everthon da Silva Ribeiro <everthonribeiro10@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.1\n",
    "time": 1775727827
  },
  "_maintainer": {
    "name": "Joao Everthon da Silva Ribeiro",
    "email": "everthonribeiro10@gmail.com"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "readxl",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "scatterplot3d",
      "role": "Suggests"
    },
    {
      "package": "shiny",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-15",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.1.1",
      "date": "2026-04-09"
    }
  ],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 471,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/fluorojip"
  },
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/fluorojip.html",
    "manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.1",
      "date": "2026-04-09"
    }
  ],
  "_exports": [
    "calc_fluorojip",
    "calc_fluorojip_file",
    "calc_fluorojip_fluorpen",
    "calc_fluorojip_handypea",
    "fluorojip_example_biolyzer_file",
    "fluorpen_to_ojip",
    "handypea_to_ojip",
    "normalized_jiptable",
    "plot_3d_fluorojip",
    "plot_heatmap_fluorojip",
    "plot_param_3d",
    "plot_param_heatmap",
    "plot_param_surface3d",
    "read_fluorpen_xlsx",
    "read_handypea_csv",
    "run_fluorojip_app",
    "write_normalized_jiptable"
  ],
  "_datasets": [
    {
      "name": "example_fluorojip",
      "title": "Example OJIP summary data",
      "object": "example_fluorojip",
      "class": [
        "data.frame"
      ],
      "fields": [
        "sample_id",
        "treatment",
        "t_fm",
        "area",
        "fo",
        "k",
        "j",
        "i",
        "fm",
        "o",
        "p",
        "s"
      ],
      "rows": 5,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "calc_fluorojip",
      "title": "Compute chlorophyll a fluorescence OJIP / JIP-test parameters",
      "topics": [
        "calc_fluorojip"
      ]
    },
    {
      "page": "calc_fluorojip_file",
      "title": "Read a summary table and compute FluorOJIP parameters",
      "topics": [
        "calc_fluorojip_file"
      ]
    },
    {
      "page": "calc_fluorojip_fluorpen",
      "title": "Calculate FluorOJIP parameters from a FluorPen workbook",
      "topics": [
        "calc_fluorojip_fluorpen"
      ]
    },
    {
      "page": "calc_fluorojip_handypea",
      "title": "Calculate FluorOJIP parameters from a supported exported table",
      "topics": [
        "calc_fluorojip_handypea"
      ]
    },
    {
      "page": "example_fluorojip",
      "title": "Example OJIP summary data",
      "topics": [
        "example_fluorojip"
      ]
    },
    {
      "page": "fluorojip_example_biolyzer_file",
      "title": "Get the bundled Biolyzer validation workbook path",
      "topics": [
        "fluorojip_example_biolyzer_file"
      ]
    },
    {
      "page": "fluorpen_to_ojip",
      "title": "Convert FluorPen traces to an OJIP summary table",
      "topics": [
        "fluorpen_to_ojip"
      ]
    },
    {
      "page": "handypea_to_ojip",
      "title": "Convert a supported CSV trace export to an OJIP summary table",
      "topics": [
        "handypea_to_ojip"
      ]
    },
    {
      "page": "normalized_jiptable",
      "title": "Build a normalized JIP parameter table",
      "topics": [
        "normalized_jiptable"
      ]
    },
    {
      "page": "plot_3d_fluorojip",
      "title": "Plot a 3D scatter plot of OJIP parameters",
      "topics": [
        "plot_3d_fluorojip",
        "plot_param_3d",
        "plot_param_surface3d"
      ]
    },
    {
      "page": "plot_heatmap_fluorojip",
      "title": "Plot a heatmap of OJIP parameters",
      "topics": [
        "plot_heatmap_fluorojip",
        "plot_param_heatmap"
      ]
    },
    {
      "page": "read_fluorpen_xlsx",
      "title": "Read a FluorPen Excel export",
      "topics": [
        "read_fluorpen_xlsx"
      ]
    },
    {
      "page": "read_handypea_csv",
      "title": "Read a supported Biolyzer-exported CSV trace table",
      "topics": [
        "read_handypea_csv"
      ]
    },
    {
      "page": "run_fluorojip_app",
      "title": "Run the fluorojip Shiny application",
      "topics": [
        "run_fluorojip_app"
      ]
    },
    {
      "page": "write_normalized_jiptable",
      "title": "Write a normalized JIP parameter table",
      "topics": [
        "write_normalized_jiptable"
      ]
    }
  ],
  "_rundeps": [
    "cellranger",
    "cli",
    "cpp11",
    "crayon",
    "glue",
    "hms",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "R6",
    "readxl",
    "rematch",
    "rlang",
    "tibble",
    "utf8",
    "vctrs"
  ],
  "_vignettes": [
    {
      "source": "fluorojip-intro.Rmd",
      "filename": "fluorojip-intro.html",
      "title": "Introduction to fluorojip",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Overview",
        "Typical workflow",
        "Example dataset",
        "Computing OJIP parameters",
        "Key parameters calculated",
        "Multivariate visualization",
        "Heatmaps",
        "3D plots",
        "Biolyzer export workflow",
        "FluorPen workflow",
        "Validation resources",
        "Shiny interface",
        "Summary",
        "References"
      ],
      "created": "2026-04-09 09:43:47",
      "modified": "2026-04-09 09:43:47",
      "commits": 1
    }
  ],
  "_score": 2,
  "_indexed": true,
  "_nocasepkg": "fluorojip",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-05-09T08:27:57.000Z",
      "distro": "noble",
      "commit": "2a9e6adbac9cc1b265293751a4632047029b9c20",
      "fileid": "c4c80a2e47b00d8548e52733968f010e7e9946c3477cd2ae34076fecbed8a2b2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/25596414049"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-05-09T08:28:04.000Z",
      "distro": "noble",
      "commit": "2a9e6adbac9cc1b265293751a4632047029b9c20",
      "fileid": "afe09ceb055b373d78131de025ed488b933478afac9ff393f14eae256080ff41",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/25596414049"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-05-22T13:04:58.000Z",
      "commit": "2a9e6adbac9cc1b265293751a4632047029b9c20",
      "fileid": "b9d36b07af4bcefd19d25487f441cf5a9aefa24768229472a35de675aaaded52",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/25596414049"
    }
  ]
}