{ "_id": "6a106aacacfb0bcc41caa179", "Package": "diverge", "Version": "2.0.6", "Date": "2022-12-14", "Title": "Evolutionary Trait Divergence Between Sister Species and Other\nPaired Lineages", "Maintainer": "Sean A. S. Anderson ", "Author": "Sean A. S. Anderson and Jason T. Weir", "Description": "Compares the fit of alternative models of continuous trait\ndifferentiation between sister species and other paired\nlineages. Differences in trait means between two lineages arise\nas they diverge from a common ancestor, and alternative\nprocesses of evolutionary divergence are expected to leave\nunique signatures in the distribution of trait differentiation\nin datasets comprised of many lineage pairs. Models include\napproximations of divergent selection, drift, and stabilizing\nselection. A variety of model extensions facilitate the testing\nof process-to-pattern hypotheses. Users supply trait data and\ndivergence times for each lineage pair. The fit of alternative\nmodels is compared in a likelihood framework.", "License": "GPL (>= 2)", "NeedsCompilation": "no", "LazyData": "true", "Packaged": { "Date": "2026-05-07 09:46:49 UTC", "User": "root" }, "Repository": "https://cran.r-universe.dev", "Date/Publication": "2022-12-15 07:40:06 UTC", "RemoteUrl": "https://github.com/cran/diverge", "RemoteRef": "HEAD", "RemoteSha": "399a318a7ad2bb044c00f6a7615b444ce38d2f84", "MD5sum": "32e87c3abc75fd5551044b173426d6dc", "_user": "cran", "_type": "src", "_file": "diverge_2.0.6.tar.gz", "_fileid": "44ead1a08de345dab05fd47a937d3605e6ad1752bfcea540dd698bdd4f4917e4", "_filesize": 434939, "_sha256": "44ead1a08de345dab05fd47a937d3605e6ad1752bfcea540dd698bdd4f4917e4", "_created": "2026-05-07T09:46:49.000Z", "_published": "2026-05-22T14:39:40.698Z", "_distro": "noble", "_jobs": [ { "job": 77402027297, "time": 106, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "6851960881" }, { "job": 77402027695, "time": 156, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "6851974699" }, { "job": 77402026779, "time": 144, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6851923375" }, { "job": 77402026565, "time": 94, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7163197676" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/25488327796", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/diverge", "_commit": { "id": "399a318a7ad2bb044c00f6a7615b444ce38d2f84", "author": "Sean A. S. Anderson ", "committer": "cran-robot ", "message": "version 2.0.6\n", "time": 1671090006 }, "_maintainer": { "name": "Sean A. S. Anderson", "email": "sean.as.anderson@gmail.com" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4", "role": "Depends" }, { "package": "parallel", "role": "Imports" }, { "package": "truncnorm", "role": "Imports" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "seanasanderson", "count": 5, "uuid": 44380061 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 251, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/diverge" }, "_searchresults": 10, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/diverge.html", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "1.0.2", "date": "2020-03-03" }, { "version": "1.0.3", "date": "2020-03-29" }, { "version": "1.0.4", "date": "2020-05-15" }, { "version": "2.0.1", "date": "2021-06-04" }, { "version": "2.0.4", "date": "2022-01-19" }, { "version": "2.0.6", "date": "2022-12-15" } ], "_exports": [ "bootstrap_ci", "expected_val", "extract_sisters", "find_mle", "likelihood_func", "model_error_rate", "model_generator", "model_select", "param_grid", "random_walks", "re_estimator", "simulate_div" ], "_datasets": [ { "name": "all_birds", "title": "Example Tree", "object": "all_birds", "class": [ "phylo" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "diverge-package", "title": "Evolutionary Trait Divergence Between Sister Species and Other Paired Lineages", "topics": [ "diverge-package", "diverge" ] }, { "page": "bootstrap_ci", "title": "Estimate confidence intervals using bootstrap", "topics": [ "bootstrap_ci" ] }, { "page": "diverge-data", "title": "Example Tree", "topics": [ "all_birds" ] }, { "page": "expected_val", "title": "Expected value through time", "topics": [ "expected_val" ] }, { "page": "extract_sisters", "title": "Extract sister pairs", "topics": [ "extract_sisters" ] }, { "page": "find_mle", "title": "Find Maximum Likelihood Estimates", "topics": [ "find_mle" ] }, { "page": "likelihood_func", "title": "Functions for negative log likelihood", "topics": [ "likelihood_func" ] }, { "page": "model_error_rate", "title": "Calculate error rate in model selection", "topics": [ "model_error_rate" ] }, { "page": "model_generator", "title": "Generate parameter~gradient linear models", "topics": [ "model_generator" ] }, { "page": "model_select", "title": "Select the best fit model of trait divergence", "topics": [ "model_select" ] }, { "page": "param_grid", "title": "Generate parameter grid", "topics": [ "param_grid" ] }, { "page": "random_walks", "title": "Simulate and plot trait evolution through time", "topics": [ "random_walks" ] }, { "page": "re_estimator", "title": "Estimate model parameters", "topics": [ "re_estimator" ] }, { "page": "simulate_div", "title": "Simulate trait divergence", "topics": [ "simulate_div" ] } ], "_rundeps": [ "truncnorm" ], "_score": 1, "_indexed": true, "_nocasepkg": "diverge", "_universes": [ "cran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.0.6", "date": "2026-05-07T09:48:41.000Z", "distro": "noble", "commit": "399a318a7ad2bb044c00f6a7615b444ce38d2f84", "fileid": "308a3a5cc619f386e3a05da3cedfbd19d0e0105f1a5ee536f7a95bde808baa1f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/25488327796" }, { "r": "4.6.0", "os": "linux", "version": "2.0.6", "date": "2026-05-07T09:49:27.000Z", "distro": "noble", "commit": "399a318a7ad2bb044c00f6a7615b444ce38d2f84", "fileid": "b3c29dafc87bfdcd8c19b919b4c820064c27feab3026d4d9d89df3718be852dd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/25488327796" }, { "r": "4.6.0", "os": "wasm", "version": "2.0.6", "date": "2026-05-22T14:39:28.000Z", "commit": "399a318a7ad2bb044c00f6a7615b444ce38d2f84", "fileid": "84c004b03ee80f74aacab3695f106d997aee5df53f1f623b4b74185302f73680", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/25488327796" } ] }