{
  "_id": "6a43f4748696d7565c169635",
  "Package": "caretMultimodal",
  "Title": "Multimodal Late Fusion with 'caret'",
  "Version": "1.0.0",
  "Authors@R": "c(\nperson(\"Josh\", \"Dyce\", , \"jpdyce@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Amrit\", \"Singh\", role = c(\"aut\"))\n)",
  "Description": "Extends the 'caret' framework to support late fusion\nworkflows, enabling users to train models independently across\nmultiple data modalities and combine their predictions into a\nsingle meta-model. Designed for developers, data scientists,\nand biomedical researchers alike, 'caretMultimodal' aims to\nmake late fusion ensemble modelling as accessible and flexible\nas single-dataset workflows in 'caret'. Late fusion methods are\nbased on Wolpert (1992) <doi:10.1016/S0893-6080(05)80023-1>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "Config/testthat/edition": "3",
  "URL": "https://github.com/CompBio-Lab/caretMultimodal,\nhttps://compbio-lab.github.io/caretMultimodal/",
  "BugReports": "https://github.com/CompBio-Lab/caretMultimodal/issues",
  "LazyData": "true",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-30 16:49:17 UTC",
    "User": "root"
  },
  "Author": "Josh Dyce [aut, cre], Amrit Singh [aut]",
  "Maintainer": "Josh Dyce <jpdyce@gmail.com>",
  "Config/pak/sysreqs": "zlib1g-dev",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-06-30 12:30:07 UTC",
  "RemoteUrl": "https://github.com/cran/caretMultimodal",
  "RemoteRef": "HEAD",
  "RemoteSha": "7d7ceb9beed08204f249b23ec3f425eb87dd5978",
  "MD5sum": "fd149fdac512907988399485a8a571a3",
  "_user": "cran",
  "_type": "src",
  "_file": "caretMultimodal_1.0.0.tar.gz",
  "_fileid": "fea62edea78f3c06e28a06693a0a0f29107675842ec3b53ed50a2c782ea29037",
  "_filesize": 2656572,
  "_sha256": "fea62edea78f3c06e28a06693a0a0f29107675842ec3b53ed50a2c782ea29037",
  "_created": "2026-06-30T16:49:17.000Z",
  "_published": "2026-06-30T16:53:08.818Z",
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 84349089440,
      "time": 189,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7987676472"
    },
    {
      "job": 84349089436,
      "time": 179,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "7987672152"
    },
    {
      "job": 84348305526,
      "time": 219,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "7987591434"
    },
    {
      "job": 84349089457,
      "time": 170,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7987668827"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/28460918609",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/caretMultimodal",
  "_commit": {
    "id": "7d7ceb9beed08204f249b23ec3f425eb87dd5978",
    "author": "Josh Dyce <jpdyce@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.0\n",
    "time": 1782822607
  },
  "_maintainer": {
    "name": "Josh Dyce",
    "email": "jpdyce@gmail.com",
    "login": "joshd898",
    "description": "",
    "uuid": 123065015
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "caret",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "pROC",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "viridis",
      "role": "Imports"
    },
    {
      "package": "MultiAssayExperiment",
      "role": "Imports"
    },
    {
      "package": "glmnet",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "randomForest",
      "role": "Suggests"
    },
    {
      "package": "doParallel",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-27",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "1.0.0",
      "date": "2026-06-30"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "joshd898",
      "count": 1,
      "uuid": 123065015
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 614,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/caretMultimodal"
  },
  "_devurl": "https://github.com/compbio-lab/caretmultimodal",
  "_pkgdown": "https://compbio-lab.github.io/caretMultimodal/",
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/caretMultimodal.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2026-06-30"
    }
  ],
  "_exports": [
    "caret_list",
    "caret_stack",
    "compute_ablation",
    "compute_feature_contributions",
    "compute_metric",
    "compute_model_contributions",
    "oof_predictions",
    "plot_ablation",
    "plot_feature_contributions",
    "plot_metric",
    "plot_model_contributions",
    "plot_roc",
    "prepare_mae"
  ],
  "_datasets": [
    {
      "name": "heart_failure_datasets",
      "title": "Heart Failure Datasets",
      "object": "heart_failure_datasets",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "heart_failure_stack",
      "title": "Pre-trained 'caret_stack' on Heart Failure Datasets",
      "object": "heart_failure_stack",
      "class": [
        "caret_stack"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "caret_list",
      "title": "Construct a 'caret_list' object",
      "topics": [
        "caret_list"
      ]
    },
    {
      "page": "caret_stack",
      "title": "Construct a 'caret_stack' object.",
      "topics": [
        "caret_stack"
      ]
    },
    {
      "page": "compute_ablation.caret_stack",
      "title": "Perform an ablation analysis for a 'caret_stack'",
      "topics": [
        "compute_ablation.caret_stack"
      ]
    },
    {
      "page": "compute_feature_contributions.caret_stack",
      "title": "Compute the feature level contributions for a 'caret_stack'.",
      "topics": [
        "compute_feature_contributions.caret_stack"
      ]
    },
    {
      "page": "compute_metric.caret_stack",
      "title": "Compute metrics with a provided metric function",
      "topics": [
        "compute_metric.caret_stack"
      ]
    },
    {
      "page": "compute_model_contributions.caret_stack",
      "title": "Compute the relative contributions of each of the base models in the ensemble model",
      "topics": [
        "compute_model_contributions.caret_stack"
      ]
    },
    {
      "page": "heart_failure_datasets",
      "title": "Heart Failure Datasets",
      "topics": [
        "heart_failure_datasets"
      ]
    },
    {
      "page": "heart_failure_stack",
      "title": "Pre-trained 'caret_stack' on Heart Failure Datasets",
      "topics": [
        "heart_failure_stack"
      ]
    },
    {
      "page": "oof_predictions.caret_list",
      "title": "Out-of-fold predictions from a 'caret_list'",
      "topics": [
        "oof_predictions.caret_list"
      ]
    },
    {
      "page": "oof_predictions.caret_stack",
      "title": "Out-of-fold predictions from a caret_stack",
      "topics": [
        "oof_predictions.caret_stack"
      ]
    },
    {
      "page": "plot_ablation.caret_stack",
      "title": "Make a bar plot of an ablation analysis for a 'caret_stack'.",
      "topics": [
        "plot_ablation.caret_stack"
      ]
    },
    {
      "page": "plot_feature_contributions.caret_stack",
      "title": "Make a bar plot of feature level for a 'caret_stack'.",
      "topics": [
        "plot_feature_contributions.caret_stack"
      ]
    },
    {
      "page": "plot_metric.caret_stack",
      "title": "Plot metrics computed with a provided metric function",
      "topics": [
        "plot_metric.caret_stack"
      ]
    },
    {
      "page": "plot_model_contributions.caret_stack",
      "title": "Plot the relative contributions of each of the base models in the ensemble model",
      "topics": [
        "plot_model_contributions.caret_stack"
      ]
    },
    {
      "page": "plot_roc.caret_stack",
      "title": "Plot ROC curves for individual and ensemble models in a caret_stack",
      "topics": [
        "plot_roc.caret_stack"
      ]
    },
    {
      "page": "predict.caret_list",
      "title": "Predict from a 'caret_list'",
      "topics": [
        "predict.caret_list"
      ]
    },
    {
      "page": "predict.caret_stack",
      "title": "Create a matrix of predictions for a 'caret_stack' object.",
      "topics": [
        "predict.caret_stack"
      ]
    },
    {
      "page": "prepare_mae",
      "title": "Prepare a MultiAssayExperiment for use with caretMultimodal",
      "topics": [
        "prepare_mae"
      ]
    },
    {
      "page": "summary.caret_list",
      "title": "Provide a summary of the best tuning parameters and resampling metrics for all the 'caret_list' models.",
      "topics": [
        "summary.caret_list"
      ]
    },
    {
      "page": "summary.caret_stack",
      "title": "Get a summary of a 'caret_stack' object",
      "topics": [
        "summary.caret_stack"
      ]
    }
  ],
  "_readme": "https://github.com/cran/caretMultimodal/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "Biobase",
    "BiocBaseUtils",
    "BiocGenerics",
    "caret",
    "class",
    "cli",
    "clock",
    "codetools",
    "cpp11",
    "data.table",
    "DelayedArray",
    "diagram",
    "digest",
    "dplyr",
    "e1071",
    "farver",
    "foreach",
    "future",
    "future.apply",
    "generics",
    "GenomicRanges",
    "ggplot2",
    "glmnet",
    "globals",
    "glue",
    "gower",
    "gridExtra",
    "gtable",
    "hardhat",
    "ipred",
    "IRanges",
    "isoband",
    "iterators",
    "KernSmooth",
    "labeling",
    "lattice",
    "lava",
    "lifecycle",
    "listenv",
    "lubridate",
    "magrittr",
    "MASS",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "ModelMetrics",
    "MultiAssayExperiment",
    "nlme",
    "nnet",
    "numDeriv",
    "parallelly",
    "pillar",
    "pkgconfig",
    "plyr",
    "pROC",
    "prodlim",
    "progressr",
    "proxy",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "RcppEigen",
    "recipes",
    "reshape2",
    "rlang",
    "rpart",
    "S4Arrays",
    "S4Vectors",
    "S7",
    "scales",
    "Seqinfo",
    "shape",
    "SparseArray",
    "sparsevctrs",
    "SQUAREM",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "survival",
    "tibble",
    "tidyr",
    "tidyselect",
    "timechange",
    "timeDate",
    "tzdb",
    "utf8",
    "vctrs",
    "viridis",
    "viridisLite",
    "withr",
    "XVector"
  ],
  "_score": 1.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "caretmultimodal",
  "_universes": [
    "cran",
    "joshd898",
    "compbio-lab"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-06-30T16:51:56.000Z",
      "distro": "resolute",
      "commit": "7d7ceb9beed08204f249b23ec3f425eb87dd5978",
      "fileid": "b92c057183a57953d333398a7f09f887a4f027e807aa31a9d544aec52f43f7df",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/28460918609"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-06-30T16:51:50.000Z",
      "distro": "resolute",
      "commit": "7d7ceb9beed08204f249b23ec3f425eb87dd5978",
      "fileid": "112c84ade320a1190af0603dc846846879f3be7069059279938d0864d8186927",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/28460918609"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-06-30T16:52:31.000Z",
      "commit": "7d7ceb9beed08204f249b23ec3f425eb87dd5978",
      "fileid": "fbc7e2b513a980d2dc9d0a07497bf071f09f4879023c60c92070741a96e6c616",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/28460918609"
    }
  ]
}