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  "Package": "bios2mds",
  "Title": "From Biological Sequences to Multidimensional Scaling",
  "Version": "1.2.3",
  "Date": "2020-04-02",
  "Author": "Julien Pele with Jean-Michel Becu, Rym Ben Boubaker, Herve\nAbdi, and Marie Chabbert",
  "Maintainer": "Marie Chabbert <marie.chabbert@univ-angers.fr>",
  "Description": "Utilities dedicated to the analysis of biological\nsequences by metric MultiDimensional Scaling with projection of\nsupplementary data. It contains functions for reading multiple\nsequence alignment files, calculating distance matrices,\nperforming metric multidimensional scaling and visualizing\nresults.",
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  "Date/Publication": "2020-04-07 08:50:09 UTC",
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      "page": "bios2mds-package",
      "title": "From BIOlogical Sequences to MultiDimensional Scaling",
      "topics": [
        "bios2mds-package",
        "bios2mds"
      ]
    },
    {
      "page": "col.group",
      "title": "Links elements in a mmds object to specific groups and colors",
      "topics": [
        "col.group"
      ]
    },
    {
      "page": "dif",
      "title": "Difference score",
      "topics": [
        "dif"
      ]
    },
    {
      "page": "dis",
      "title": "Dissimilarity score",
      "topics": [
        "dis"
      ]
    },
    {
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      "title": "Writes a MSA file in FASTA format",
      "topics": [
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      ]
    },
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      "title": "Extraction of clusters alignments",
      "topics": [
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    },
    {
      "page": "gpcr",
      "title": "Pre-analyzed G-Protein-Coupled Receptor (GPCR) data set",
      "topics": [
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      ]
    },
    {
      "page": "import.fasta",
      "title": "Reads a file in FASTA format",
      "topics": [
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      ]
    },
    {
      "page": "import.msf",
      "title": "Reads a multiple sequence alignment file in MSF format",
      "topics": [
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    {
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      "title": "Multiple runs of K-means analysis",
      "topics": [
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      ]
    },
    {
      "page": "mat.dif",
      "title": "Matrices of difference scores between sequences",
      "topics": [
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      ]
    },
    {
      "page": "mat.dis",
      "title": "Matrices of dissimilarity scores between amino acid sequences",
      "topics": [
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    },
    {
      "page": "mmds",
      "title": "Metric multidimensional scaling",
      "topics": [
        "mmds"
      ]
    },
    {
      "page": "mmds.2D.multi",
      "title": "Plots the mmds coordinates onto a 2D space",
      "topics": [
        "mmds.2D.multi"
      ]
    },
    {
      "page": "mmds.2D.plot",
      "title": "Plots the mmds coordinates onto a 2D space",
      "topics": [
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    },
    {
      "page": "mmds.3D.plot",
      "title": "Display the mmds coordinates onto a 3D space",
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    },
    {
      "page": "mmds.plot",
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      "topics": [
        "mmds.plot"
      ]
    },
    {
      "page": "mmds.project",
      "title": "Metric multidimensional Scaling Projection",
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    {
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