{ "_id": "6ae2f8393d0f299392dd04c3", "Type": "Package", "Package": "baskexact", "Title": "Analytical Calculation of Basket Trial Operating Characteristics", "Version": "1.0.1", "Authors@R": "person(\"Lukas\", \"Baumann\", , \"baumann@imbi.uni-heidelberg.de\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-7931-7470\"))", "Description": "Analytically calculates the operating characteristics of\nsingle-stage and two-stage basket trials with equal sample\nsizes using the power prior design by Baumann et al. (2024)\n and the design by Fujikawa et\nal. (2020) .", "License": "GPL (>= 3)", "URL": "https://github.com/lbau7/baskexact", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "Collate": "'RcppExports.R' 'class.R' 'adjust_lambda.R' 'analysis.R'\n'basket_test.R' 'baskexact-package.R' 'borrowing.R' 'check.R'\n'ecd.R' 'ess.R' 'estim.R' 'globalweights.R' 'helper.R'\n'interim.R' 'monotonicity.R' 'opt_design.R' 'plot.R' 'pow.R'\n'rejection_probabilities.R' 'toer.R' 'validate.R' 'weights.R'", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-29 07:29:09 UTC", "User": "root" }, "Author": "Lukas Baumann [aut, cre]\n()", "Maintainer": "Lukas Baumann ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2024-04-10 02:34:46 UTC", "RemoteUrl": "https://github.com/cran/baskexact", "RemoteRef": "HEAD", "RemoteSha": "6ce99eafc9fa698ff22bbdb049d824e4b9c310f9", "_user": "cran", "_type": "src", "_file": "baskexact_1.0.1.tar.gz", "_fileid": "https://r2.ropensci.org/6868fbc8256eb0c8f773104e87e0db816d74a3d764712428e437f1b3d3f6ba96", "_filesize": 272019, "_sha256": "6868fbc8256eb0c8f773104e87e0db816d74a3d764712428e437f1b3d3f6ba96", "_expires": "2027-02-06T07:39:35.000Z", "_created": "2026-10-29T07:29:09.000Z", "_published": "2026-10-29T07:39:37.086Z", "_upstream": "https://github.com/cran/baskexact", "_status": "success", "_maintainer": { "name": "Lukas Baumann", "email": "baumann@imbi.uni-heidelberg.de", "login": "lbau7", "description": "", "uuid": 55873662, "orcid": "0000-0001-7931-7470" }, "_jobs": [ { "job": 123320087237, "time": 312, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "12881340134" }, { "job": 123320087136, "time": 237, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12881270605" }, { "job": 123320087258, "time": 305, "config": "linux-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "12880454091" }, { "job": 123320087138, "time": 407, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12880738047" }, { "job": 123318834414, "time": 215, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12880811143" }, { "job": 123320087106, "time": 109, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12880313326" }, { "job": 123320087251, "time": 485, "config": "windows-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "12880956952" }, { "job": 123320087194, "time": 248, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12881115646" }, { "job": 123320087281, "time": 482, "config": "windows-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "12880936484" }, { "job": 123320087224, "time": 418, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12880613895" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/40669896168", "_commit": { "id": "6ce99eafc9fa698ff22bbdb049d824e4b9c310f9", "author": "Lukas Baumann ", "committer": "cran-robot ", "message": "version 1.0.1\n", "time": 1712716486 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "arrangements", "role": "Imports" }, { "package": "doFuture", "role": "Imports" }, { "package": "extraDistr", "role": "Imports" }, { "package": "foreach", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "Rcpp", "role": "Imports" }, { "package": "covr", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "progressr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 2, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "lbau7", "count": 3, "uuid": 55873662 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "followers": 634, "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 381, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/baskexact" }, "_devurl": "https://github.com/lbau7/baskexact", "_searchresults": 13, "_topics": [ "openblas", "cpp" ], "_rbuild": "4.6.1", "_assets": [ "extra/baskexact.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/lbau7/baskexact", "_realowner": "lbau7", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2021-09-15" }, { "version": "1.0.0", "date": "2024-03-13" }, { "version": "1.0.1", "date": "2024-04-09" } ], "_exports": [ "adjust_lambda", "basket_test", "check_mon_between", "check_mon_within", "ecd", "ess", "estim", "get_scenarios", "globalweights_diff", "globalweights_fix", "interim_posterior", "interim_postpred", "opt_design", "plot_weights", "pow", "setupOneStageBasket", "setupTwoStageBasket", "toer", "weights_cpp", "weights_fujikawa", "weights_jsd", "weights_mml", "weights_pool", "weights_separate" ], "_help": [ { "page": "adjust_lambda", "title": "Adjust Lambda", "topics": [ "adjust_lambda", "adjust_lambda,OneStageBasket-method", "adjust_lambda,TwoStageBasket-method" ] }, { "page": "basket_test", "title": "Test for the Results of a Basket Trial", "topics": [ "basket_test", "basket_test,OneStageBasket-method" ] }, { "page": "check_mon_between", "title": "Check Between-Trial Monotonicity", "topics": [ "check_mon_between", "check_mon_between,OneStageBasket-method" ] }, { "page": "check_mon_within", "title": "Check Within-Trial Monotonicity", "topics": [ "check_mon_within", "check_mon_within,OneStageBasket-method" ] }, { "page": "ecd", "title": "Expected number of correct decisions", "topics": [ "ecd", "ecd,OneStageBasket-method", "ecd,TwoStageBasket-method" ] }, { "page": "ess", "title": "Expected Sample Size", "topics": [ "ess", "ess,TwoStageBasket-method" ] }, { "page": "estim", "title": "Posterior Mean and Mean Squared Error", "topics": [ "estim", "estim,OneStageBasket-method", "estim,TwoStageBasket-method" ] }, { "page": "get_scenarios", "title": "Create a Scenario Matrix", "topics": [ "get_scenarios" ] }, { "page": "globalweights_diff", "title": "Global Weights Based on Response Rate Differences", "topics": [ "globalweights_diff" ] }, { "page": "globalweights_fix", "title": "Fixed Global Weights", "topics": [ "globalweights_fix" ] }, { "page": "interim_posterior", "title": "Interim analysis based on the posterior probability", "topics": [ "interim_posterior", "interim_posterior,TwoStageBasket-method" ] }, { "page": "interim_postpred", "title": "Interim analysis based on the posterior predictive probability", "topics": [ "interim_postpred", "interim_postpred,TwoStageBasket-method" ] }, { "page": "OneStageBasket-class", "title": "Class OneStageBasket", "topics": [ "OneStageBasket", "OneStageBasket-class" ] }, { "page": "opt_design", "title": "Optimize a Basket Design", "topics": [ "opt_design", "opt_design,OneStageBasket-method", "opt_design,TwoStageBasket-method" ] }, { "page": "plot_weights", "title": "Plot Weight Functions", "topics": [ "plot_weights", "plot_weights,OneStageBasket-method" ] }, { "page": "pow", "title": "Power", "topics": [ "pow", "pow,OneStageBasket-method", "pow,TwoStageBasket-method" ] }, { "page": "setupOneStageBasket", "title": "Setup OneStageBasket", "topics": [ "setupOneStageBasket" ] }, { "page": "setupTwoStageBasket", "title": "Setup TwoStageBasket", "topics": [ "setupTwoStageBasket" ] }, { "page": "toer", "title": "Type 1 Error Rate", "topics": [ "toer", "toer,OneStageBasket-method", "toer,TwoStageBasket-method" ] }, { "page": "TwoStageBasket-class", "title": "Class TwoStageBasket", "topics": [ "TwoStageBasket", "TwoStageBasket-class" ] }, { "page": "weights_cpp", "title": "Weights Based on the Calibrated Power Prior", "topics": [ "weights_cpp", "weights_cpp,OneStageBasket-method", "weights_cpp,TwoStageBasket-method" ] }, { "page": "weights_fujikawa", "title": "Weights Based on Fujikawa et al.'s Design", "topics": [ "weights_fujikawa", "weights_fujikawa,OneStageBasket-method", "weights_fujikawa,TwoStageBasket-method" ] }, { "page": "weights_jsd", "title": "Weights Based on the Jensen-Shannon Divergence", "topics": [ "weights_jsd", "weights_jsd,OneStageBasket-method", "weights_jsd,TwoStageBasket-method" ] }, { "page": "weights_mml", "title": "Weights Based on the Marginal Maximum Likelihood", "topics": [ "weights_mml", "weights_mml,OneStageBasket-method", "weights_mml,TwoStageBasket-method" ] }, { "page": "weights_pool", "title": "Pooled Analysis", "topics": [ "weights_pool", "weights_pool,OneStageBasket-method", "weights_pool,TwoStageBasket-method" ] }, { "page": "weights_separate", "title": "Separate Analysis in Each Basket", "topics": [ "weights_separate", "weights_separate,OneStageBasket-method", "weights_separate,TwoStageBasket-method" ] } ], "_readme": "https://github.com/cran/baskexact/raw/HEAD/README.md", "_rundeps": [ "arrangements", "cli", "codetools", "cpp11", "digest", "doFuture", "extraDistr", "farver", "foreach", "future", "future.apply", "ggplot2", "globals", "glue", "gmp", "gtable", "isoband", "iterators", "labeling", "lifecycle", "listenv", "parallelly", "R6", "RColorBrewer", "Rcpp", "RcppArmadillo", "rlang", "S7", "scales", "vctrs", "viridisLite", "withr" ], "_sysdeps": [ { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.32+ds-5", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "v2_Extending_baskexact.Rmd", "filename": "v2_Extending_baskexact.html", "title": "Extending baskexact", "author": "Lukas Baumann", "engine": "knitr::rmarkdown", "headings": [ "Information Sharing in baskexact", "Pairwise Weights", "Global Weights", "References" ], "created": "2024-03-14 02:29:55", "modified": "2024-03-14 02:29:55", "commits": 1 }, { "source": "v1_Introduction.Rmd", "filename": "v1_Introduction.html", "title": "Introduction to baskexact", "author": "Lukas Baumann", "engine": "knitr::rmarkdown", "headings": [ "Scope", "Basic Usage", "References" ], "created": "2024-03-14 02:29:55", "modified": "2024-03-14 02:29:55", "commits": 1 }, { "source": "v3_Reproduce_Fujikawa.Rmd", "filename": "v3_Reproduce_Fujikawa.html", "title": "Reproduce Results From Fujikawa et al. (2020)", "author": "Lukas Baumann", "engine": "knitr::rmarkdown", "headings": [ "References" ], "created": "2024-03-14 02:29:55", "modified": "2024-03-14 02:29:55", "commits": 1 } ], "_score": 4.068185861746161, "_indexed": false, "_nocasepkg": "baskexact", "_universes": [ "cran" ], "_indexurl": "https://lbau7.r-universe.dev/baskexact", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.1", "date": "2026-10-29T07:32:10.000Z", "distro": "resolute", "arch": "aarch64", "commit": "6ce99eafc9fa698ff22bbdb049d824e4b9c310f9", "fileid": "https://r2.ropensci.org/978749da6c01ad1efe6129f230109167582f19a0d7ccea5d8bf1fadc7b271893", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40669896168" }, { "r": "4.7.0", "os": "linux", "version": "1.0.1", "date": "2026-10-29T07:33:46.000Z", "distro": "resolute", "arch": "x86_64", "commit": "6ce99eafc9fa698ff22bbdb049d824e4b9c310f9", "fileid": "https://r2.ropensci.org/a102c9941cc7396f9fcdc0b0e8434cc33b1e83437af5b6d4060132633c561bd0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40669896168" }, { "r": "4.6.1", "os": "linux", "version": "1.0.1", "date": "2026-10-29T07:32:08.000Z", "distro": "resolute", "arch": "aarch64", "commit": "6ce99eafc9fa698ff22bbdb049d824e4b9c310f9", "fileid": "https://r2.ropensci.org/2854c05a038ab7bc68c81a50a00c64512043569695b25e05797c3a1652cff8c7", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40669896168" }, { "r": "4.6.1", "os": "linux", "version": "1.0.1", "date": "2026-10-29T07:34:01.000Z", "distro": "resolute", "arch": "x86_64", "commit": "6ce99eafc9fa698ff22bbdb049d824e4b9c310f9", "fileid": "https://r2.ropensci.org/5fc9184d216a4d17491daf18023d44783ad2c9603b91ab0365ea043a0f186ede", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40669896168" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.1", "date": "2026-10-29T07:33:53.000Z", "arch": "emscripten", "commit": "6ce99eafc9fa698ff22bbdb049d824e4b9c310f9", "fileid": "https://r2.ropensci.org/6b78b55287ad39861a68ef38f7fe6400afd5ab13edce9e7f3b728136d8dbc2cc", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/40669896168" }, { "r": "4.7.0", "os": "win", "version": "1.0.1", "date": "2026-10-29T07:34:37.000Z", "arch": "aarch64", "commit": "6ce99eafc9fa698ff22bbdb049d824e4b9c310f9", "fileid": "https://r2.ropensci.org/5accbcadd9066f9ef39b134a4fca69fd35695d2247141233dd7f5aeb8886c275", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40669896168" }, { "r": "4.7.0", "os": "win", "version": "1.0.1", "date": "2026-10-29T07:32:55.000Z", "arch": "x86_64", "commit": "6ce99eafc9fa698ff22bbdb049d824e4b9c310f9", "fileid": "https://r2.ropensci.org/9df12f964e699698d6504ad97adfd4d31a03b25fc4ce21d948eec614988d1db1", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40669896168" }, { "r": "4.6.1", "os": "win", "version": "1.0.1", "date": "2026-10-29T07:34:35.000Z", "arch": "aarch64", "commit": "6ce99eafc9fa698ff22bbdb049d824e4b9c310f9", "fileid": "https://r2.ropensci.org/8f61bb4e6f9bfd90102e4a7df6bafcfadf2e4f7d2652814692bbb825538e7d8e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40669896168" }, { "r": "4.6.1", "os": "win", "version": "1.0.1", "date": "2026-10-29T07:33:06.000Z", "arch": "x86_64", "commit": "6ce99eafc9fa698ff22bbdb049d824e4b9c310f9", "fileid": "https://r2.ropensci.org/2dcdc56e9a758786a07454b368be98e6e4d27121a12ca07c341fc1cf2058223a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/cran/actions/runs/40669896168" } ] }