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  "Package": "baseline",
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  "Title": "Baseline Correction of Spectra",
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  "Date": "2026-09-18",
  "Authors@R": "c(person(given = \"Kristian Hovde\", \nfamily = \"Liland\",\nrole = c(\"aut\",\"cre\"),\nemail=\"kristian.liland@nmbu.no\",\ncomment = c(ORCID = \"0000-0001-6468-9423\")),\nperson(given = \"Bjørn-Helge\",\nfamily = \"Mevik\",\nrole=c(\"aut\")),\nperson(given = \"Roberto\",\nfamily = \"Canteri\",\nrole=c(\"ctb\")))",
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  "Description": "Collection of baseline correction algorithms, along with a\nframework and a Tcl/Tk enabled GUI for optimising baseline\nalgorithm parameters. Typical use of the package is for\nremoving background effects from spectra originating from\nvarious types of spectroscopy and spectrometry, possibly\noptimizing this with regard to regression or classification\nresults. Correction methods include polynomial fitting,\nweighted local smoothers and many more.",
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    "baseline",
    "baseline.als",
    "baseline.fillPeaks",
    "baseline.irls",
    "baseline.lowpass",
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    "baseline.modpolyfit",
    "baseline.peakDetection",
    "baseline.rfbaseline",
    "baseline.rollingBall",
    "baseline.shirley",
    "baseline.TAP",
    "baselineAlgorithms",
    "baselineAlgorithmsGUI",
    "baselineEnv",
    "baselineGUI",
    "custom.baseline",
    "description",
    "doOptim",
    "extraArgs",
    "funcName",
    "getBaseline",
    "getBaselineEnv",
    "getCall",
    "getCorrected",
    "getOptim",
    "getOptimRes",
    "getSpectra",
    "ind.min",
    "minQualMeas",
    "mvrValstats",
    "name",
    "optimWizard",
    "overall.min",
    "param",
    "param.ind.min",
    "param.min",
    "paramName",
    "plot",
    "plotBaseline",
    "plotOptim",
    "putBaselineEnv",
    "qualMeas",
    "qualMeas.ind.min",
    "qualMeasName",
    "runTest"
  ],
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      "title": "XPS core line data",
      "object": "C1s",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [],
      "rows": 2,
      "table": true,
      "tojson": true
    },
    {
      "name": "milk",
      "title": "MALDI-TOF mass spectra",
      "object": "milk",
      "class": [
        "data.frame"
      ],
      "fields": [
        "cow",
        "spectra"
      ],
      "rows": 45,
      "table": false,
      "tojson": true
    },
    {
      "name": "O1s",
      "title": "XPS core line data",
      "object": "O1s",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [],
      "rows": 2,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "baseline-package",
      "title": "Baseline correction",
      "topics": [
        "baseline-package"
      ]
    },
    {
      "page": "algorithm",
      "title": "Extraction methods for \"baselineAlgTest\" objects",
      "topics": [
        "algorithm",
        "algorithm,baselineAlgTest-method",
        "algorithm-methods",
        "extraArgs",
        "extraArgs,baselineAlgTest-method",
        "extraArgs-methods"
      ]
    },
    {
      "page": "baseline",
      "title": "Baseline correction",
      "topics": [
        "baseline"
      ]
    },
    {
      "page": "baseline.als",
      "title": "Asymmetric Least Squares",
      "topics": [
        "als",
        "baseline.als"
      ]
    },
    {
      "page": "baseline.fillPeaks",
      "title": "Fill peaks",
      "topics": [
        "baseline.fillPeaks",
        "fillPeaks"
      ]
    },
    {
      "page": "baseline.irls",
      "title": "Iterative Restricted Least Squares",
      "topics": [
        "baseline.irls",
        "irls"
      ]
    },
    {
      "page": "baseline.lowpass",
      "title": "Low-pass FFT filter",
      "topics": [
        "baseline.lowpass",
        "lowpass"
      ]
    },
    {
      "page": "baseline.medianWindow",
      "title": "Median window",
      "topics": [
        "baseline.medianWindow",
        "medianWindow"
      ]
    },
    {
      "page": "baseline.modpolyfit",
      "title": "Modified polynomial fitting",
      "topics": [
        "baseline.modpolyfit",
        "modpolyfit"
      ]
    },
    {
      "page": "baseline.peakDetection",
      "title": "Simultaneous Peak Detection and Baseline Correction",
      "topics": [
        "baseline.peakDetection",
        "peakDetection"
      ]
    },
    {
      "page": "baseline.rfbaseline",
      "title": "Robust Baseline Estimation",
      "topics": [
        "baseline.rfbaseline",
        "rfbaseline"
      ]
    },
    {
      "page": "baseline.rollingBall",
      "title": "Rolling ball",
      "topics": [
        "baseline.rollingBall",
        "rollingBall"
      ]
    },
    {
      "page": "baseline.shirley",
      "title": "Shirley Background Estimation",
      "topics": [
        "baseline.shirley",
        "shirley"
      ]
    },
    {
      "page": "baseline.TAP",
      "title": "TAP",
      "topics": [
        "baseline.TAP",
        "TAP"
      ]
    },
    {
      "page": "baselineAlg",
      "title": "Extraction methods for \"baselineAlg\" objects",
      "topics": [
        "baselineAlg",
        "description",
        "description,baselineAlg-method",
        "description-methods",
        "name",
        "name,baselineAlg-method",
        "name-methods"
      ]
    },
    {
      "page": "baselineAlgClass",
      "title": "Class \"baselineAlg\"",
      "topics": [
        "baselineAlg-class",
        "baselineAlgClass"
      ]
    },
    {
      "page": "baselineAlgorithms",
      "title": "List of available baseline algorithms",
      "topics": [
        "baselineAlgorithms"
      ]
    },
    {
      "page": "baselineAlgorithmsGUI",
      "title": "List of available baseline algorithms for GUI function",
      "topics": [
        "baselineAlgorithmsGUI"
      ]
    },
    {
      "page": "baselineAlgResult",
      "title": "Class \"baselineAlgResult\"",
      "topics": [
        "baselineAlgResult",
        "baselineAlgResult-class"
      ]
    },
    {
      "page": "baselineAlgResultMethods",
      "title": "Extraction methods for \"baselineAlgResult\" objects",
      "topics": [
        "baselineAlgResultMethods",
        "param.ind.min",
        "param.ind.min,baselineAlgResult-method",
        "param.ind.min-methods",
        "qualMeas.ind.min",
        "qualMeas.ind.min,baselineAlgResult-method",
        "qualMeas.ind.min-methods"
      ]
    },
    {
      "page": "baselineAlgTest",
      "title": "Class \"baselineAlgTest\"",
      "topics": [
        "baselineAlgTest",
        "baselineAlgTest-class"
      ]
    },
    {
      "page": "baselineClass",
      "title": "Class \"baseline\"",
      "topics": [
        "baseline-class",
        "baselineClass"
      ]
    },
    {
      "page": "baselineEnv",
      "title": "Baseline environment",
      "topics": [
        "baselineEnv",
        "getBaselineEnv",
        "putBaselineEnv"
      ]
    },
    {
      "page": "baselineGUI",
      "title": "Interactive plotting tool",
      "topics": [
        "baselineGUI"
      ]
    },
    {
      "page": "custom.baseline",
      "title": "Customized baseline correction",
      "topics": [
        "custom.baseline"
      ]
    },
    {
      "page": "doOptim",
      "title": "Optimise several baseline algorithms on a data set",
      "topics": [
        "doOptim",
        "mvrValstats"
      ]
    },
    {
      "page": "funcName",
      "title": "Extract the \"funcName\" slot.",
      "topics": [
        "funcName",
        "funcName,baselineAlg-method",
        "funcName,baselineAlgTest-method",
        "funcName-methods"
      ]
    },
    {
      "page": "getSpectra",
      "title": "Functions to extract the components of a \"baseline\" object",
      "topics": [
        "getBaseline",
        "getBaseline,baseline-method",
        "getCall",
        "getCall,baseline-method",
        "getCorrected",
        "getCorrected,baseline-method",
        "getSpectra",
        "getSpectra,baseline-method"
      ]
    },
    {
      "page": "milk",
      "title": "MALDI-TOF mass spectra",
      "topics": [
        "milk"
      ]
    },
    {
      "page": "optimWizard",
      "title": "Visual tool for setting up optimization",
      "topics": [
        "getOptim",
        "getOptimRes",
        "optimWizard"
      ]
    },
    {
      "page": "overall.min",
      "title": "Extract the minimum from a baseline optimisation",
      "topics": [
        "overall.min"
      ]
    },
    {
      "page": "param",
      "title": "Extract the \"param\" slot",
      "topics": [
        "param",
        "param,baselineAlg-method",
        "param,baselineAlgResult-method",
        "param,baselineAlgTest-method",
        "param,predictionResult-method",
        "param-methods"
      ]
    },
    {
      "page": "plotBaseline",
      "title": "Plot method for \"baseline\" objects",
      "topics": [
        "plot,baseline-method",
        "plotBaseline"
      ]
    },
    {
      "page": "plotOptim",
      "title": "Plotting tool for result objects from optimization",
      "topics": [
        "plotOptim"
      ]
    },
    {
      "page": "PLSRTestClass",
      "title": "Class \"PLSRTest\"",
      "topics": [
        "PLSRTest-class",
        "PLSRTestClass"
      ]
    },
    {
      "page": "predictionResult",
      "title": "Class \"predictionResult\"",
      "topics": [
        "predictionResult",
        "predictionResult-class"
      ]
    },
    {
      "page": "predictionResultMethods",
      "title": "Extraction methods specific for \"predictionResult\" objects",
      "topics": [
        "ind.min",
        "ind.min,predictionResult-method",
        "ind.min-methods",
        "paramName",
        "paramName,predictionResult-method",
        "paramName-methods",
        "predictionResultMethods"
      ]
    },
    {
      "page": "predictionTest",
      "title": "Class \"predictionTest\"",
      "topics": [
        "predictionTest",
        "predictionTest-class",
        "predictionTestClass"
      ]
    },
    {
      "page": "qualMeas",
      "title": "Extraction functions for \"predictionResult\" or \"baselineAlgResult\" objects.",
      "topics": [
        "minQualMeas",
        "minQualMeas,baselineAlgResult-method",
        "minQualMeas,predictionResult-method",
        "minQualMeas-methods",
        "param.min",
        "param.min,baselineAlgResult-method",
        "param.min,predictionResult-method",
        "param.min-methods",
        "qualMeas",
        "qualMeas,baselineAlgResult-method",
        "qualMeas,predictionResult-method",
        "qualMeas-methods",
        "qualMeasName",
        "qualMeasName,baselineAlgResult-method",
        "qualMeasName,predictionResult-method",
        "qualMeasName-methods"
      ]
    },
    {
      "page": "ridgeRegressionTestClass",
      "title": "Class \"ridgeRegressionTest\"",
      "topics": [
        "ridgeRegressionTest-class",
        "ridgeRegressionTestClass"
      ]
    },
    {
      "page": "runTest",
      "title": "Run a predictionTest or baselineAlgTest",
      "topics": [
        "runTest",
        "runTest,baselineAlgTest-method",
        "runTest,PLSRTest-method",
        "runTest,ridgeRegressionTest-method",
        "runTest-methods"
      ]
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      "page": "XPSdata",
      "title": "XPS core line data",
      "topics": [
        "C1s",
        "O1s",
        "XPSdata"
      ]
    }
  ],
  "_readme": "https://github.com/cran/baseline/raw/HEAD/README.md",
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