{ "_id": "6a196705acfb0bcc41de7a94", "Type": "Package", "Package": "bartMan", "Title": "Create Visualisations for BART Models", "Version": "0.2.1", "Authors@R": "c(person(given = \"Alan\",\nfamily = \"Inglis\",\nrole = c(\"aut\", \"cre\"),\nemail = \"alan.inglis@mu.ie\"),\nperson(given = \"Andrew\",\nfamily = \"Parnell\",\nrole = \"aut\",\nemail = \"andrew.parnell@mu.ie\"),\nperson(given = \"Catherine\",\nfamily = \"Hurley\",\nrole = \"aut\",\nemail = \"catherine.hurley@mu.ie\"),\nperson(given = \"Claus\",\nfamily = \"Wilke\",\nrole = \"ctb\",\ncomment = \"Developer of VSUP script\"))", "Maintainer": "Alan Inglis ", "Description": "Investigating and visualising Bayesian Additive Regression\nTree (BART) (Chipman, H. A., George, E. I., & McCulloch, R. E.\n2010) model fits. We construct\nconventional plots to analyze a model’s performance and\nstability as well as create new tree-based plots to analyze\nvariable importance, interaction, and tree structure. We\nemploy Value Suppressing Uncertainty Palettes (VSUP) to\nconstruct heatmaps that display variable importance and\ninteractions jointly using colour scale to represent posterior\nuncertainty. Our visualisations are designed to work with the\nmost popular BART R packages available, namely 'BART' Rodney\nSparapani and Charles Spanbauer and Robert McCulloch 2021\n, 'dbarts' (Vincent Dorie 2023)\n, and 'bartMachine'\n(Adam Kapelner and Justin Bleich 2016)\n.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-29 10:09:49 UTC", "User": "root" }, "Author": "Alan Inglis [aut, cre], Andrew Parnell [aut], Catherine Hurley\n[aut], Claus Wilke [ctb] (Developer of VSUP script)", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2025-09-18 12:58:54 UTC", "RemoteUrl": "https://github.com/cran/bartMan", "RemoteRef": "HEAD", "RemoteSha": "4d0a3c46d1b598bf7ad6b90eb55b3379e4001366", "MD5sum": "bc16368c73385f1606d30e138ed161fd", "_user": "cran", "_type": "src", "_file": "bartMan_0.2.1.tar.gz", "_fileid": "62050d1daf5f0ef0521d14213d236dbfc608b09685e3da0d0fc008f17d6e6451", "_filesize": 291146, "_sha256": "62050d1daf5f0ef0521d14213d236dbfc608b09685e3da0d0fc008f17d6e6451", "_created": "2026-05-29T10:09:49.000Z", "_published": "2026-05-29T10:14:29.196Z", "_distro": "noble", "_jobs": [ { "job": 78480821704, "time": 228, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7288325227" }, { "job": 78480821746, "time": 198, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7288315961" }, { "job": 78480256494, "time": 233, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7288257332" }, { "job": 78480821659, "time": 163, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7288304660" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/26631192364", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/bartMan", "_commit": { "id": "4d0a3c46d1b598bf7ad6b90eb55b3379e4001366", "author": "Alan Inglis ", "committer": "cran-robot ", "message": "version 0.2.1\n", "time": 1758200334 }, "_maintainer": { "name": "Alan Inglis", "email": "alan.inglis@mu.ie" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "colorspace", "role": "Imports" }, { "package": "cowplot", "role": "Imports" }, { "package": "DendSer", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "ggiraph", "role": "Imports" }, { "package": "ggnewscale", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "ggraph", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "gtable", "role": "Imports" }, { "package": "patchwork", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "rrapply", "role": "Imports" }, { "package": "scales", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "tidygraph", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "BART", "role": "Imports" }, { "package": "bartMachine", "role": "Imports" }, { "package": "dbarts", "role": "Imports" }, { "package": "rJava", "role": "Imports" }, { "package": "ROCR", "role": "Suggests" }, { "package": "ggridges", "role": "Suggests" }, { "package": "ggforce", "role": "Suggests" }, { "package": "lvplot", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-34", "n": 1 }, { "week": "2025-38", "n": 1 } ], "_tags": [ { "name": "0.2.0", "date": "2025-08-22" }, { "name": "0.2.1", "date": "2025-09-18" } ], "_stars": 0, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 224, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/bartMan" }, "_searchresults": 16, "_topics": [ "openjdk" ], "_rbuild": "4.6.0", "_assets": [ "extra/bartMan.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2024-04-15" }, { "version": "0.1.1", "date": "2024-07-24" }, { "version": "0.2.0", "date": "2025-08-22" }, { "version": "0.2.1", "date": "2025-09-18" } ], "_exports": [ "acceptRate", "bartClassifDiag", "bartDiag", "bartRegrDiag", "bartReorder", "bivariate_range", "bivariate_scale", "clusterTrees", "combineDummy", "extractTreeData", "getChildren", "getObservations", "guide_colorfan", "guide_colourfan", "localProcedure", "mdsBart", "node_depth", "pal_vsup", "permVimp", "permVint", "plotProximity", "plotSingleTree", "plotTrees", "proximityMatrix", "RangeBivariate", "ScaleBivariate", "sort_trees_by_depthMax", "splitDensity", "terminalFunction", "train_bivariate", "tree_dataframe", "treeBarPlot", "treeDepth", "treeList", "treeNodes", "vimpBart", "vimpPlot", "vintPlot", "viviBart", "viviBartMatrix", "viviBartPlot" ], "_datasets": [ { "name": "input_data", "title": "input_data", "object": "input_data", "class": [ "data.frame" ], "fields": [ "x1", "x2", "x3", "x4", "x5", "y" ], "rows": 10, "table": true, "tojson": true }, { "name": "tree_data_example", "title": "tree_data_example", "object": "tree_data_example", "class": [ "data.frame" ], "fields": [ "var", "value", "iteration", "treeNum" ], "rows": 14, "table": true, "tojson": true } ], "_help": [ { "page": "acceptRate", "title": "acceptRate", "topics": [ "acceptRate" ] }, { "page": "bartClassifDiag", "title": "bartClassifDiag", "topics": [ "bartClassifDiag" ] }, { "page": "bartDiag", "title": "bartDiag", "topics": [ "bartDiag" ] }, { "page": "bartRegrDiag", "title": "bartRegrDiag", "topics": [ "bartRegrDiag" ] }, { "page": "bartReorder", "title": "bartReorder", "topics": [ "bartReorder" ] }, { "page": "clusterTrees", "title": "Cluster Trees by Variable", "topics": [ "clusterTrees" ] }, { "page": "combineDummy", "title": "Update Dummy Variable Names", "topics": [ "combineDummy" ] }, { "page": "extractTreeData", "title": "extractTreeData", "topics": [ "extractTreeData" ] }, { "page": "get_stump_colour_for_legend", "title": "Determines the stump color for a legend based on its mean value", "topics": [ "get_stump_colour_for_legend" ] }, { "page": "getChildren", "title": "Generate Child and Parent Node Relationships", "topics": [ "getChildren" ] }, { "page": "getObservations", "title": "Get Observations Falling into Each Node", "topics": [ "getObservations" ] }, { "page": "guide_colourfan", "title": "Colourfan guide", "topics": [ "guide_colorfan", "guide_colourfan" ] }, { "page": "input_data", "title": "input_data", "topics": [ "input_data" ] }, { "page": "localProcedure", "title": "localProcedure", "topics": [ "localProcedure" ] }, { "page": "mdsBart", "title": "mdsBart", "topics": [ "mdsBart" ] }, { "page": "node_depth", "title": "Calculate Node Depths in a Tree Data Frame", "topics": [ "node_depth" ] }, { "page": "pal_vsup", "title": "Variance suppressing uncertainty palette", "topics": [ "pal_vsup" ] }, { "page": "permVimp", "title": "permVimp", "topics": [ "permVimp" ] }, { "page": "permVint", "title": "permVint", "topics": [ "permVint" ] }, { "page": "plotProximity", "title": "plotProximity", "topics": [ "plotProximity" ] }, { "page": "plotSingleTree", "title": "plotSingleTree", "topics": [ "plotSingleTree" ] }, { "page": "plotTrees", "title": "Plot Trees with Customisations", "topics": [ "plotTrees" ] }, { "page": "print.hideHelper1", "title": "print.hideHelper", "topics": [ "print.hideHelper1" ] }, { "page": "proximityMatrix", "title": "proximityMatrix", "topics": [ "proximityMatrix" ] }, { "page": "bivariate_range", "title": "Constructor for bivariate range object", "topics": [ "bivariate_range", "RangeBivariate" ] }, { "page": "bivariate_scale", "title": "Constructor for bivariate scale object", "topics": [ "bivariate_scale", "ScaleBivariate" ] }, { "page": "sort_trees_by_depthMax", "title": "Sort Trees by Maximum Depth", "topics": [ "sort_trees_by_depthMax" ] }, { "page": "splitDensity", "title": "splitDensity", "topics": [ "splitDensity" ] }, { "page": "terminalFunction", "title": "Generate Terminal Node Indicator", "topics": [ "terminalFunction" ] }, { "page": "train_bivariate", "title": "Train range for bivariate scale", "topics": [ "train_bivariate" ] }, { "page": "tree_data_example", "title": "tree_data_example", "topics": [ "tree_data_example" ] }, { "page": "tree_dataframe", "title": "Transform tree data into a structured dataframe", "topics": [ "tree_dataframe" ] }, { "page": "treeBarPlot", "title": "Plot Frequency of Tree Structures", "topics": [ "treeBarPlot" ] }, { "page": "treeDepth", "title": "treeDepth", "topics": [ "treeDepth" ] }, { "page": "treeList", "title": "Generate a List of Tree Structures from BART Model Output", "topics": [ "treeList" ] }, { "page": "treeNodes", "title": "treeNodes", "topics": [ "treeNodes" ] }, { "page": "vimpBart", "title": "vimpBart", "topics": [ "vimpBart" ] }, { "page": "vimpPlot", "title": "vimpPlot", "topics": [ "vimpPlot" ] }, { "page": "vintPlot", "title": "vintPlot", "topics": [ "vintPlot" ] }, { "page": "viviBart", "title": "viviBart", "topics": [ "viviBart" ] }, { "page": "viviBartMatrix", "title": "viviBartMatrix", "topics": [ "viviBartMatrix" ] }, { "page": "viviBartPlot", "title": "viviBartPlot", "topics": [ "viviBartPlot" ] } ], "_readme": "https://github.com/cran/bartMan/raw/HEAD/README.md", "_rundeps": [ "backports", "BART", "bartMachine", "bartMachineJARs", "base64enc", "bslib", "ca", "cachem", "checkmate", "cli", "cluster", "codetools", "colorspace", "cowplot", "cpp11", "dbarts", "DendSer", "digest", "doRNG", "dplyr", "evaluate", "farver", "fastmap", "fontawesome", "fontBitstreamVera", "fontLiberation", "fontquiver", "foreach", "fs", "gclus", "gdtools", "generics", "ggforce", "ggiraph", "ggnewscale", "ggplot2", "ggraph", "ggrepel", "glue", "graphlayouts", "gridExtra", "gtable", "highr", "htmltools", "htmlwidgets", "igraph", "isoband", "iterators", "itertools", "jquerylib", "jsonlite", "knitr", "labeling", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "matrixStats", "memoise", "mgcv", "mime", "missForest", "nlme", "patchwork", "permute", "pillar", "pkgconfig", "polyclip", "purrr", "qap", "R6", "randomForest", "ranger", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "registry", "rJava", "rlang", "rmarkdown", "rngtools", "rrapply", "S7", "sass", "scales", "seriation", "stringi", "stringr", "survival", "systemfonts", "tibble", "tidygraph", "tidyr", "tidyselect", "tinytex", "TSP", "tweenr", "utf8", "vctrs", "vegan", "viridis", "viridisLite", "withr", "xfun", "yaml" ], "_sysdeps": [ { "shlib": "libjvm", "package": "openjdk-21-jre-headless", "headers": "openjdk-21-jre-headless", "source": "openjdk", "version": "21.0.10+7-1~24.04", "name": "openjdk", "homepage": "https://openjdk.java.net/", "description": "OpenJDK Java runtime, using Hotspot JIT (headless)" } ], "_score": 2.204119982655925, "_indexed": true, "_nocasepkg": "bartman", "_universes": [ "cran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.2.1", "date": "2026-05-29T10:12:58.000Z", "distro": "noble", "commit": "4d0a3c46d1b598bf7ad6b90eb55b3379e4001366", "fileid": "4611bea0392c5c295300f6ca4358782a3fcf8ad677a39ef7d0768fe4f3195606", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26631192364" }, { "r": "4.6.0", "os": "linux", "version": "0.2.1", "date": "2026-05-29T10:12:31.000Z", "distro": "noble", "commit": "4d0a3c46d1b598bf7ad6b90eb55b3379e4001366", "fileid": "b92a046d50aa2908c960ef544d74984f0f72da22af008d78db7dda8721a057b6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26631192364" }, { "r": "4.6.0", "os": "wasm", "version": "0.2.1", "date": "2026-05-29T10:13:05.000Z", "commit": "4d0a3c46d1b598bf7ad6b90eb55b3379e4001366", "fileid": "6b5c28b739e9c7310b9c2282450f2f57c6e2506fcde825fcfc1dea2cd35f19bb", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/26631192364" } ] }