{
  "_id": "6a102849acfb0bcc41c9094c",
  "Package": "auk",
  "Title": "eBird Data Extraction and Processing in R",
  "Version": "0.9.1",
  "Authors@R": "c(person(given = \"Matthew\",\nfamily = \"Strimas-Mackey\",\nrole = c(\"aut\", \"cre\"),\nemail = \"mes335@cornell.edu\",\ncomment = c(ORCID = \"0000-0001-8929-7776\")),\nperson(given = \"Eliot\",\nfamily = \"Miller\",\nrole = \"aut\"),\nperson(given = \"Wesley\",\nfamily = \"Hochachka\",\nrole = \"aut\"),\nperson(given = \"Cornell Lab of Ornithology\",\nrole = \"cph\"))",
  "Description": "Extract and process bird sightings records from eBird\n(<http://ebird.org>), an online tool for recording bird\nobservations.  Public access to the full eBird database is via\nthe eBird Basic Dataset (EBD; see\n<http://ebird.org/ebird/data/download> for access), a\ndownloadable text file. This package is an interface to AWK for\nextracting data from the EBD based on taxonomic, spatial, or\ntemporal filters, to produce a manageable file size that can be\nimported into R.",
  "License": "GPL-3",
  "URL": "https://cornelllabofornithology.github.io/auk/",
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  "Author": "Matthew Strimas-Mackey [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-8929-7776>), Eliot Miller [aut],\nWesley Hochachka [aut], Cornell Lab of Ornithology [cph]",
  "Maintainer": "Matthew Strimas-Mackey <mes335@cornell.edu>",
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    "%>%",
    "auk_bbox",
    "auk_bcr",
    "auk_breeding",
    "auk_clean",
    "auk_complete",
    "auk_country",
    "auk_county",
    "auk_date",
    "auk_distance",
    "auk_duration",
    "auk_ebd",
    "auk_ebd_version",
    "auk_exotic",
    "auk_extent",
    "auk_filter",
    "auk_get_awk_path",
    "auk_get_ebd_path",
    "auk_last_edited",
    "auk_observer",
    "auk_project",
    "auk_protocol",
    "auk_rollup",
    "auk_sampling",
    "auk_select",
    "auk_set_awk_path",
    "auk_set_ebd_path",
    "auk_species",
    "auk_split",
    "auk_state",
    "auk_time",
    "auk_unique",
    "auk_version",
    "auk_year",
    "auk_zerofill",
    "collapse_zerofill",
    "ebird_species",
    "filter_repeat_visits",
    "format_unmarked_occu",
    "get_ebird_taxonomy",
    "process_barcharts",
    "read_ebd",
    "read_sampling"
  ],
  "_datasets": [
    {
      "name": "bcr_codes",
      "title": "BCR Codes",
      "object": "bcr_codes",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "bcr_code",
        "bcr_name"
      ],
      "rows": 66,
      "table": true,
      "tojson": true
    },
    {
      "name": "ebird_states",
      "title": "eBird States",
      "object": "ebird_states",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "country",
        "country_code",
        "state",
        "state_code"
      ],
      "rows": 3145,
      "table": true,
      "tojson": true
    },
    {
      "name": "ebird_taxonomy",
      "title": "eBird Taxonomy",
      "object": "ebird_taxonomy",
      "class": [
        "data.frame"
      ],
      "fields": [
        "species_code",
        "taxon_concept_id",
        "scientific_name",
        "common_name",
        "order",
        "family",
        "family_common",
        "category",
        "taxonomic_order",
        "report_as",
        "extinct"
      ],
      "rows": 17891,
      "table": true,
      "tojson": true
    },
    {
      "name": "valid_protocols",
      "title": "Valid Protocols",
      "object": "valid_protocols",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "auk_bbox",
      "title": "Filter the eBird data by spatial bounding box",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_bbox"
      ]
    },
    {
      "page": "auk_bcr",
      "title": "Filter the eBird data by Bird Conservation Region",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_bcr"
      ]
    },
    {
      "page": "auk_breeding",
      "title": "Filter to only include observations with breeding codes",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_breeding"
      ]
    },
    {
      "page": "auk_clean",
      "title": "Clean an eBird data file (Deprecated)",
      "concept": [
        "text"
      ],
      "topics": [
        "auk_clean"
      ]
    },
    {
      "page": "auk_complete",
      "title": "Filter out incomplete checklists from the eBird data",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_complete"
      ]
    },
    {
      "page": "auk_country",
      "title": "Filter the eBird data by country",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_country"
      ]
    },
    {
      "page": "auk_county",
      "title": "Filter the eBird data by county",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_county"
      ]
    },
    {
      "page": "auk_date",
      "title": "Filter the eBird data by date",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_date"
      ]
    },
    {
      "page": "auk_distance",
      "title": "Filter eBird data by distance travelled",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_distance"
      ]
    },
    {
      "page": "auk_duration",
      "title": "Filter the eBird data by duration",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_duration"
      ]
    },
    {
      "page": "auk_ebd",
      "title": "Reference to eBird data file",
      "concept": [
        "objects"
      ],
      "topics": [
        "auk_ebd"
      ]
    },
    {
      "page": "auk_ebd_version",
      "title": "Get the EBD version and associated taxonomy version",
      "concept": [
        "helpers"
      ],
      "topics": [
        "auk_ebd_version"
      ]
    },
    {
      "page": "auk_exotic",
      "title": "Filter the eBird data by exotic code",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_exotic"
      ]
    },
    {
      "page": "auk_extent",
      "title": "Filter the eBird data by spatial extent",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_extent"
      ]
    },
    {
      "page": "auk_filter",
      "title": "Filter the eBird file using AWK",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_filter",
        "auk_filter.auk_ebd",
        "auk_filter.auk_sampling"
      ]
    },
    {
      "page": "auk_get_awk_path",
      "title": "OS specific path to AWK executable",
      "concept": [
        "paths"
      ],
      "topics": [
        "auk_get_awk_path"
      ]
    },
    {
      "page": "auk_get_ebd_path",
      "title": "Return EBD data path",
      "concept": [
        "paths"
      ],
      "topics": [
        "auk_get_ebd_path"
      ]
    },
    {
      "page": "auk_last_edited",
      "title": "Filter the eBird data by last edited date",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_last_edited"
      ]
    },
    {
      "page": "auk_observer",
      "title": "Filter the eBird data by observer",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_observer"
      ]
    },
    {
      "page": "auk_project",
      "title": "Filter the eBird data by project code",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_project"
      ]
    },
    {
      "page": "auk_protocol",
      "title": "Filter the eBird data by protocol",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_protocol"
      ]
    },
    {
      "page": "auk_rollup",
      "title": "Roll up eBird taxonomy to species",
      "concept": [
        "pre"
      ],
      "topics": [
        "auk_rollup"
      ]
    },
    {
      "page": "auk_sampling",
      "title": "Reference to eBird sampling event file",
      "concept": [
        "objects"
      ],
      "topics": [
        "auk_sampling"
      ]
    },
    {
      "page": "auk_select",
      "title": "Select a subset of columns",
      "concept": [
        "text"
      ],
      "topics": [
        "auk_select"
      ]
    },
    {
      "page": "auk_set_awk_path",
      "title": "Set a custom path to AWK executable",
      "concept": [
        "paths"
      ],
      "topics": [
        "auk_set_awk_path"
      ]
    },
    {
      "page": "auk_set_ebd_path",
      "title": "Set the path to EBD text files",
      "concept": [
        "paths"
      ],
      "topics": [
        "auk_set_ebd_path"
      ]
    },
    {
      "page": "auk_species",
      "title": "Filter the eBird data by species",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_species"
      ]
    },
    {
      "page": "auk_split",
      "title": "Split an eBird data file by species",
      "concept": [
        "text"
      ],
      "topics": [
        "auk_split"
      ]
    },
    {
      "page": "auk_state",
      "title": "Filter the eBird data by state",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_state"
      ]
    },
    {
      "page": "auk_time",
      "title": "Filter the eBird data by checklist start time",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_time"
      ]
    },
    {
      "page": "auk_unique",
      "title": "Remove duplicate group checklists",
      "concept": [
        "pre"
      ],
      "topics": [
        "auk_unique"
      ]
    },
    {
      "page": "auk_version",
      "title": "Versions of auk, the EBD, and the eBird taxonomy",
      "concept": [
        "helpers"
      ],
      "topics": [
        "auk_version"
      ]
    },
    {
      "page": "auk_year",
      "title": "Filter the eBird data to a set of years",
      "concept": [
        "filter"
      ],
      "topics": [
        "auk_year"
      ]
    },
    {
      "page": "auk_zerofill",
      "title": "Read and zero-fill an eBird data file",
      "concept": [
        "import"
      ],
      "topics": [
        "auk_zerofill",
        "auk_zerofill.auk_ebd",
        "auk_zerofill.character",
        "auk_zerofill.data.frame",
        "collapse_zerofill"
      ]
    },
    {
      "page": "bcr_codes",
      "title": "BCR Codes",
      "concept": [
        "data"
      ],
      "topics": [
        "bcr_codes"
      ]
    },
    {
      "page": "ebird_species",
      "title": "Lookup species in eBird taxonomy",
      "concept": [
        "helpers"
      ],
      "topics": [
        "ebird_species"
      ]
    },
    {
      "page": "ebird_states",
      "title": "eBird States",
      "concept": [
        "data"
      ],
      "topics": [
        "ebird_states"
      ]
    },
    {
      "page": "ebird_taxonomy",
      "title": "eBird Taxonomy",
      "concept": [
        "data"
      ],
      "topics": [
        "ebird_taxonomy"
      ]
    },
    {
      "page": "filter_repeat_visits",
      "title": "Filter observations to repeat visits for hierarchical modeling",
      "concept": [
        "modeling"
      ],
      "topics": [
        "filter_repeat_visits"
      ]
    },
    {
      "page": "format_unmarked_occu",
      "title": "Format EBD data for occupancy modeling with 'unmarked'",
      "concept": [
        "modeling"
      ],
      "topics": [
        "format_unmarked_occu"
      ]
    },
    {
      "page": "get_ebird_taxonomy",
      "title": "Get eBird taxonomy via the eBird API",
      "concept": [
        "helpers"
      ],
      "topics": [
        "get_ebird_taxonomy"
      ]
    },
    {
      "page": "process_barcharts",
      "title": "Process eBird bar chart data",
      "concept": [
        "helpers"
      ],
      "topics": [
        "process_barcharts"
      ]
    },
    {
      "page": "read_ebd",
      "title": "Read an EBD file",
      "concept": [
        "import"
      ],
      "topics": [
        "read_ebd",
        "read_ebd.auk_ebd",
        "read_ebd.character",
        "read_sampling",
        "read_sampling.auk_ebd",
        "read_sampling.auk_sampling",
        "read_sampling.character"
      ]
    },
    {
      "page": "valid_protocols",
      "title": "Valid Protocols",
      "concept": [
        "data"
      ],
      "topics": [
        "valid_protocols"
      ]
    }
  ],
  "_rundeps": [
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