{
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  "Package": "astrochron",
  "Type": "Package",
  "Title": "A Computational Tool for Astrochronology",
  "Version": "1.6",
  "Date": "2026-02-24",
  "Authors@R": "c(person(given = \"Stephen\", family = \"Meyers\", role = c(\"aut\", \"cre\"),\nemail = \"smeyers@geology.wisc.edu\"),\nperson(given = \"Alberto\", family = \"Malinverno\", role = \"ctb\"),\nperson(given = \"Linda\", family = \"Hinnov\", role = \"ctb\"),\nperson(given = \"Christian\", family = \"Zeeden\", role = \"ctb\"),\nperson(given = \"Huaran\", family = \"Liu\", role = \"ctb\"),\nperson(given = \"Vincent\", family = \"Moron\", role = \"ctb\"),\nperson(given = \"Michel\", family = \"Crucifix\", role = \"ctb\"))",
  "Maintainer": "Stephen Meyers <smeyers@geology.wisc.edu>",
  "Description": "Routines for astrochronologic testing, astronomical time\nscale construction, and time series analysis\n<doi:10.1016/j.earscirev.2018.11.015>. Also included are a\nrange of statistical analysis and modeling routines that are\nrelevant to time scale development and paleoclimate analysis.",
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  "NeedsCompilation": "yes",
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  "Author": "Stephen Meyers [aut, cre], Alberto Malinverno [ctb], Linda\nHinnov [ctb], Christian Zeeden [ctb], Huaran Liu [ctb], Vincent\nMoron [ctb], Michel Crucifix [ctb]",
  "Repository": "https://cran.r-universe.dev",
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    "anchorTime",
    "ar1",
    "ar1etp",
    "arcsinT",
    "armaGen",
    "asm",
    "autoPlot",
    "bandpass",
    "bergerPeriods",
    "bicoherence",
    "bioturb",
    "calcPeriods",
    "cb",
    "clipIt",
    "confAdjust",
    "constantSedrate",
    "conv_fft",
    "cosTaper",
    "cycles",
    "deconv",
    "delPts",
    "demean",
    "detrend",
    "diffAccum",
    "divTrend",
    "dpssTaper",
    "eAsm",
    "eAsmTrack",
    "eha",
    "eTimeOpt",
    "eTimeOptTrack",
    "etp",
    "extract",
    "flip",
    "freq2sedrate",
    "gausTaper",
    "getColor",
    "getData",
    "getLaskar",
    "hannTaper",
    "headn",
    "hilbert",
    "idPts",
    "imbrie",
    "impulseResponse",
    "insoDiff",
    "insoMap",
    "insoSeries",
    "integratePower",
    "iso",
    "linage",
    "linterp",
    "linterpLH13",
    "logT",
    "lowpass",
    "lowspec",
    "makeNoise",
    "mtm",
    "mtmAR",
    "mtmML96",
    "mtmPL",
    "multiTest",
    "mwCor",
    "mwin",
    "mwinGrid",
    "mwMinMax",
    "mwStats",
    "mwStatsGrid",
    "noKernel",
    "noLow",
    "pad",
    "peak",
    "periodogram",
    "pl",
    "plotEha",
    "plS",
    "prewhiteAR",
    "prewhiteAR1",
    "pwrLaw",
    "pwrLawFit",
    "rankSeries",
    "read",
    "readMatrix",
    "repl0",
    "replEps",
    "resample",
    "rmNA",
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    "sedrate2time",
    "slideCor",
    "sortNave",
    "stepHeat",
    "stratPCA",
    "strats",
    "surrogateCor",
    "surrogates",
    "synthStrat",
    "taner",
    "tanerFC",
    "testBackground",
    "testPrecession",
    "testTilt",
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    "timeOptB",
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    "trough",
    "tune",
    "unbioturb",
    "writeCSV",
    "writeT",
    "wtMean",
    "xplot",
    "zoomIn"
  ],
  "_datasets": [
    {
      "name": "modelA",
      "title": "Example stratigraphic model series",
      "object": "modelA",
      "file": "modelA.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "m",
        "CaCO3"
      ],
      "rows": 499,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "astrochron-package",
      "title": "astrochron: A Computational Tool for Astrochronology",
      "topics": [
        "astrochron-package",
        "astrochron"
      ]
    },
    {
      "page": "accum",
      "title": "Calculate geochemical proxy accumulation rates",
      "topics": [
        "accum"
      ]
    },
    {
      "page": "anchorTime",
      "title": "Anchor a floating astrochronology to a radioisotopic age",
      "topics": [
        "anchorTime"
      ]
    },
    {
      "page": "ar1",
      "title": "Generate AR(1) surrogates",
      "topics": [
        "ar1"
      ]
    },
    {
      "page": "ar1etp",
      "title": "AR(1) + ETP simulation routine",
      "topics": [
        "ar1etp"
      ]
    },
    {
      "page": "arcsinT",
      "title": "Arcsine transformation of stratigraphic series",
      "topics": [
        "arcsinT"
      ]
    },
    {
      "page": "armaGen",
      "title": "Generate autoregressive moving-average model",
      "topics": [
        "armaGen"
      ]
    },
    {
      "page": "asm",
      "title": "Average Spectral Misfit",
      "topics": [
        "asm"
      ]
    },
    {
      "page": "autoPlot",
      "title": "Automatically plot multiple stratigraphic series, with smoothing if desired",
      "topics": [
        "autoPlot"
      ]
    },
    {
      "page": "bandpass",
      "title": "Bandpass filter stratigraphic series",
      "topics": [
        "bandpass"
      ]
    },
    {
      "page": "bergerPeriods",
      "title": "Obliquity and precession periods of Berger et al. (1992)",
      "topics": [
        "bergerPeriods"
      ]
    },
    {
      "page": "bicoherence",
      "title": "bicoherence: Calculate bispectrum and bicoherence using WOSA method as detailed in Choudhury et al. (2008).",
      "topics": [
        "bicoherence"
      ]
    },
    {
      "page": "bioturb",
      "title": "Bioturbate time series using diffusion model from Guinasso and Schinck (1975), as in Liu et al. (2021)",
      "topics": [
        "bioturb"
      ]
    },
    {
      "page": "calcPeriods",
      "title": "Calculate eccentricity, obliquity and precession periods in ka, given g, s and k in arcsec/yr",
      "topics": [
        "calcPeriods"
      ]
    },
    {
      "page": "cb",
      "title": "Combine multiple vectors",
      "topics": [
        "cb"
      ]
    },
    {
      "page": "clipIt",
      "title": "Create non-linear response by clipping stratigraphic series",
      "topics": [
        "clipIt"
      ]
    },
    {
      "page": "confAdjust",
      "title": "Adjust spectrum confidence levels for multiple comparisons",
      "topics": [
        "confAdjust"
      ]
    },
    {
      "page": "constantSedrate",
      "title": "Apply a constant sedimentation rate model to transform a spatial series to temporal series",
      "topics": [
        "constantSedrate"
      ]
    },
    {
      "page": "conv_fft",
      "title": "Convolution through Fast Fourier Transform",
      "topics": [
        "conv_fft"
      ]
    },
    {
      "page": "cosTaper",
      "title": "Apply cosine taper to stratigraphic series",
      "topics": [
        "cosTaper"
      ]
    },
    {
      "page": "cycles",
      "title": "Generate harmonic model",
      "topics": [
        "cycles"
      ]
    },
    {
      "page": "deconv",
      "title": "Wiener Deconvolution through Fast Fourier Transform",
      "topics": [
        "deconv"
      ]
    },
    {
      "page": "delPts",
      "title": "Interactively delete points in plot",
      "topics": [
        "delPts"
      ]
    },
    {
      "page": "demean",
      "title": "Remove mean value from stratigraphic series",
      "topics": [
        "demean"
      ]
    },
    {
      "page": "detrend",
      "title": "Subtract linear trend from stratigraphic series",
      "topics": [
        "detrend"
      ]
    },
    {
      "page": "diffAccum",
      "title": "Model differential accumulation",
      "topics": [
        "diffAccum"
      ]
    },
    {
      "page": "divTrend",
      "title": "Divide by linear trend in stratigraphic series",
      "topics": [
        "divTrend"
      ]
    },
    {
      "page": "dpssTaper",
      "title": "Apply DPSS taper to stratigraphic series",
      "topics": [
        "dpssTaper"
      ]
    },
    {
      "page": "eAsm",
      "title": "Evolutive Average Spectral Misfit",
      "topics": [
        "eAsm"
      ]
    },
    {
      "page": "eAsmTrack",
      "title": "Track ASM null hypothesis significance level minima in eASM results",
      "topics": [
        "eAsmTrack"
      ]
    },
    {
      "page": "eha",
      "title": "Evolutive Harmonic Analysis & Evolutive Power Spectral Analysis",
      "topics": [
        "eha"
      ]
    },
    {
      "page": "eTimeOpt",
      "title": "eTimeOpt: Evolutive implementation of TimeOpt (Meyers, 2015; Meyers, 2019)",
      "topics": [
        "eTimeOpt"
      ]
    },
    {
      "page": "eTimeOptTrack",
      "title": "Track eTimeOpt r2 maxima",
      "topics": [
        "eTimeOptTrack"
      ]
    },
    {
      "page": "etp",
      "title": "Generate eccentricity-tilt-precession models",
      "topics": [
        "etp"
      ]
    },
    {
      "page": "extract",
      "title": "Extract record from EHA time-frequency output or eAsm output",
      "topics": [
        "extract"
      ]
    },
    {
      "page": "flip",
      "title": "Flip stratigraphic series",
      "topics": [
        "flip"
      ]
    },
    {
      "page": "freq2sedrate",
      "title": "Convert record of local spatial frequency (from EHA) to sedimentation rate curve",
      "topics": [
        "freq2sedrate"
      ]
    },
    {
      "page": "gausTaper",
      "title": "Apply Gaussian taper to stratigraphic series",
      "topics": [
        "gausTaper"
      ]
    },
    {
      "page": "getColor",
      "title": "Query R for color information",
      "topics": [
        "getColor"
      ]
    },
    {
      "page": "getData",
      "title": "Download file from astrochron data server",
      "topics": [
        "getData"
      ]
    },
    {
      "page": "getLaskar",
      "title": "Download Laskar et al. (2004, 2011a, 2011b) astronomical solutions",
      "topics": [
        "getLaskar"
      ]
    },
    {
      "page": "hannTaper",
      "title": "Apply Hann taper to stratigraphic series",
      "topics": [
        "hannTaper"
      ]
    },
    {
      "page": "headn",
      "title": "List column numbers for each variable",
      "topics": [
        "headn"
      ]
    },
    {
      "page": "hilbert",
      "title": "Hilbert transform of stratigraphic series",
      "topics": [
        "hilbert"
      ]
    },
    {
      "page": "idPts",
      "title": "Interactively identify points in plot",
      "topics": [
        "idPts"
      ]
    },
    {
      "page": "imbrie",
      "title": "Imbrie and Imbrie (1980) ice sheet model",
      "topics": [
        "imbrie"
      ]
    },
    {
      "page": "impulseResponse",
      "title": "Impulse response function calculation",
      "topics": [
        "impulseResponse"
      ]
    },
    {
      "page": "insoDiff",
      "title": "insolation difference map using Laskar et al. (2004) insolation calculations",
      "topics": [
        "insoDiff"
      ]
    },
    {
      "page": "insoMap",
      "title": "generate an insolation map using Laskar et al. (2004) insolation calculations",
      "topics": [
        "insoMap"
      ]
    },
    {
      "page": "insoSeries",
      "title": "Laskar et al. (2004) insolation calculations",
      "topics": [
        "insoSeries"
      ]
    },
    {
      "page": "integratePower",
      "title": "Determine the total power within a given bandwidth",
      "topics": [
        "integratePower"
      ]
    },
    {
      "page": "iso",
      "title": "Isolate data from a specified stratigraphic interval",
      "topics": [
        "iso"
      ]
    },
    {
      "page": "linage",
      "title": "Tune stratigraphic series to an astronomical target using graphical interface",
      "topics": [
        "linage"
      ]
    },
    {
      "page": "linterp",
      "title": "Piecewise linear interpolation of stratigraphic series",
      "topics": [
        "linterp"
      ]
    },
    {
      "page": "linterpLH13",
      "title": "Piecewise linear interpolation of stratigraphic series using the approach of Laepple and Huybers (2013)",
      "topics": [
        "linterpLH13"
      ]
    },
    {
      "page": "logT",
      "title": "Log transformation of stratigraphic series",
      "topics": [
        "logT"
      ]
    },
    {
      "page": "lowpass",
      "title": "Lowpass filter stratigraphic series",
      "topics": [
        "lowpass"
      ]
    },
    {
      "page": "lowspec",
      "title": "Robust Locally-Weighted Regression Spectral Background Estimation",
      "topics": [
        "lowspec"
      ]
    },
    {
      "page": "makeNoise",
      "title": "Generate noise surrogates from a theoretical power spectrum",
      "topics": [
        "makeNoise"
      ]
    },
    {
      "page": "modelA",
      "title": "Example stratigraphic model series",
      "topics": [
        "modelA"
      ]
    },
    {
      "page": "mtm",
      "title": "Multitaper method spectral analysis",
      "topics": [
        "mtm"
      ]
    },
    {
      "page": "mtmAR",
      "title": "Intermediate spectrum test of Thomson et al. (2001)",
      "topics": [
        "mtmAR"
      ]
    },
    {
      "page": "mtmML96",
      "title": "Mann and Lees (1996) robust red noise MTM analysis",
      "topics": [
        "mtmML96"
      ]
    },
    {
      "page": "mtmPL",
      "title": "Multitaper Method Spectral Analysis with Power Law (1/f) fit",
      "topics": [
        "mtmPL"
      ]
    },
    {
      "page": "multiTest",
      "title": "Adjust spectral p-values for multiple comparisons",
      "topics": [
        "multiTest"
      ]
    },
    {
      "page": "mwCor",
      "title": "Calculate moving window correlation coefficient for two stratigraphic series, using a 'dynamic window'",
      "topics": [
        "mwCor"
      ]
    },
    {
      "page": "mwin",
      "title": "Determine 'dynamic moving window' for stratigraphic series, adjusting for changing sample density to maintain a window of constant duration",
      "topics": [
        "mwin"
      ]
    },
    {
      "page": "mwinGrid",
      "title": "Determine 'dynamic moving window' for stratigraphic series, adjusting for changing sample density to maintain a window of constant duration; output on evenly spaced grid",
      "topics": [
        "mwinGrid"
      ]
    },
    {
      "page": "mwMinMax",
      "title": "'Dynamic window' moving assessment of maxima and minima in stratigraphic series",
      "topics": [
        "mwMinMax"
      ]
    },
    {
      "page": "mwStats",
      "title": "'Dynamic window' moving average, median and variance of stratigraphic series",
      "topics": [
        "mwStats"
      ]
    },
    {
      "page": "mwStatsGrid",
      "title": "'Dynamic window' moving average, median and variance of stratigraphic series, using evenly spaced spatial/temporal grid",
      "topics": [
        "mwStatsGrid"
      ]
    },
    {
      "page": "noKernel",
      "title": "Remove Gaussian kernel smoother from stratigraphic series",
      "topics": [
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    },
    {
      "page": "noLow",
      "title": "Fit and remove Lowess smoother from stratigraphic series",
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      "page": "pad",
      "title": "Pad stratigraphic series with zeros",
      "topics": [
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      "page": "peak",
      "title": "Identify maxima of peaks in series, filter at desired threshold value",
      "topics": [
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      "page": "periodogram",
      "title": "Simple periodogram",
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    },
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      "page": "pl",
      "title": "Set up plots",
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      "page": "plotEha",
      "title": "Create color time-frequency plots from eha results.",
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    {
      "page": "plS",
      "title": "Set default plotting parameters for vertical stratigraphic plots",
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      "page": "prewhiteAR",
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      "topics": [
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      "title": "Prewhiten stratigraphic series with AR1 filter, using 'standard' or unbiased estimate of rho",
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      "page": "pwrLaw",
      "title": "Generate power law (1/f) noise surrogates",
      "topics": [
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      "page": "pwrLawFit",
      "title": "Estimate power law (1/f) fit to power spectrum",
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    {
      "page": "rankSeries",
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      "page": "read",
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      "topics": [
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      "page": "readMatrix",
      "title": "Read data matrix from file",
      "topics": [
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      "page": "repl0",
      "title": "Replace values < 0 with 0",
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      "page": "replEps",
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      "page": "resample",
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      "topics": [
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      "topics": [
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      "page": "sedrate2time",
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      "page": "slideCor",
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    {
      "page": "stepHeat",
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      "page": "stratPCA",
      "title": "Principal Component Analysis on Stratigraphic Series",
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      "page": "strats",
      "title": "Summary statistics for stratigraphic series",
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