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  "Date": "2026-01-08",
  "Title": "Computing Graph Structures on WikiPathways",
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  "Description": "Converts pathways from 'WikiPathways' GPML format or\n'KEGG' KGML format into 'igraph' objects. Includes tools to\nfind all cycles in the resulting graphs and determine which\nones involve negative feedback (inhibition).",
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      "page": "11-coerce",
      "title": "Convert igraph object to Ragraph",
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      "page": "04-cycles",
      "title": "Finding Cycles in Biological Pathways",
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        "interpretCycle"
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        "edgeTypes",
        "gpml-data",
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        "nodeShapes"
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        "collectEdges",
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        "collectLabels",
        "collectNodes",
        "collectShapes",
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        "collectReactions",
        "collectRelations",
        "kgml-utility"
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