{
  "_id": "6a2274a3cd65a98ecbd4a39f",
  "Package": "Upsilon",
  "Type": "Package",
  "Title": "Another Test of Association for Count Data",
  "Version": "0.1.1",
  "Date": "2026-03-07",
  "Authors@R": "c(person(given = \"Xuye\",\nfamily = \"Luo\",\nrole = c(\"aut\"),\nemail = \"luoxuye@nmsu.edu\"),\nperson(given = \"Joe\",\nfamily = \"Song\",\nrole = c(\"aut\", \"cre\"),\nemail = \"joemsong@nmsu.edu\",\ncomment = c(ORCID = \"0000-0002-6883-6547\")))",
  "Description": "The Upsilon test assesses association among categorical\nvariables against the null hypothesis of independence (Luo 2021\nMS thesis; ProQuest Publication No. 28649813). While promoting\ndominant function patterns, it demotes non-dominant function\npatterns. It is robust to low expected count---continuity\ncorrection like Yates's seems unnecessary. Using a common null\npopulation following a uniform distribution, contingency tables\nare comparable by statistical significance---not the case for\nmost association tests defining a varying null population by\ntensor product of observed marginals. Although Pearson's\nchi-squared test, Fisher's exact test, and Woolf's G-test\n(related to mutual information) are useful in some contexts,\nthe Upsilon test appeals to ranking association patterns not\nnecessarily following same marginal distributions, such as in\ncount data from DNA and RNA sequencing---a rapidly expanding\nfrontier in modern science.",
  "Encoding": "UTF-8",
  "License": "LGPL (>= 3)",
  "RdMacros": "Rdpack",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-05 06:59:04 UTC",
    "User": "root"
  },
  "Author": "Xuye Luo [aut], Joe Song [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6883-6547>)",
  "Maintainer": "Joe Song <joemsong@nmsu.edu>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-03-07 13:20:08 UTC",
  "RemoteUrl": "https://github.com/cran/Upsilon",
  "RemoteRef": "HEAD",
  "RemoteSha": "3bba8771cf6c6a06f26f811a0d24af33a724c8ef",
  "MD5sum": "cafa033684f85ffce6e0a1e568c13909",
  "_user": "cran",
  "_type": "src",
  "_file": "Upsilon_0.1.1.tar.gz",
  "_fileid": "a04687cc76330b2100164e1869a3efda2a716aac372f041527c2fecab386912c",
  "_filesize": 1179113,
  "_sha256": "a04687cc76330b2100164e1869a3efda2a716aac372f041527c2fecab386912c",
  "_created": "2026-06-05T06:59:04.000Z",
  "_published": "2026-06-05T07:02:59.715Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79679729953,
      "time": 183,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7430716517"
    },
    {
      "job": 79679729935,
      "time": 175,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7430714079"
    },
    {
      "job": 79679729925,
      "time": 187,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7430717460"
    },
    {
      "job": 79679729939,
      "time": 184,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7430715747"
    },
    {
      "job": 79679222521,
      "time": 251,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7430671784"
    },
    {
      "job": 79679729928,
      "time": 146,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7430706752"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/27000221143",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/Upsilon",
  "_commit": {
    "id": "3bba8771cf6c6a06f26f811a0d24af33a724c8ef",
    "author": "Joe Song <joemsong@nmsu.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.1\n",
    "time": 1772889608
  },
  "_maintainer": {
    "name": "Joe Song",
    "email": "joemsong@nmsu.edu",
    "orcid": "0000-0002-6883-6547"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 1.0.8",
      "role": "Imports"
    },
    {
      "package": "Rdpack",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "version": ">= 3.4.0",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "DescTools",
      "role": "Suggests"
    },
    {
      "package": "USP",
      "role": "Suggests"
    },
    {
      "package": "metan",
      "role": "Suggests"
    },
    {
      "package": "FunChisq",
      "role": "Suggests"
    },
    {
      "package": "patchwork",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-02",
      "n": 1
    },
    {
      "week": "2026-10",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.1.0",
      "date": "2026-01-06"
    },
    {
      "name": "0.1.1",
      "date": "2026-03-07"
    }
  ],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 473,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/Upsilon"
  },
  "_searchresults": 0,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/Upsilon.html",
    "manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2026-01-06"
    },
    {
      "version": "0.1.1",
      "date": "2026-03-07"
    }
  ],
  "_exports": [
    "fast.chisq.test",
    "fast.gtest",
    "fast.upsilon.test",
    "modified.chisq.statistic",
    "modified.chisq.test",
    "modified.gtest",
    "plot_matrix",
    "table.to.vectors",
    "upsilon.gof.statistic",
    "upsilon.gof.test",
    "upsilon.statistic",
    "upsilon.test"
  ],
  "_help": [
    {
      "page": "fast.chisq.test",
      "title": "Fast Zero-Tolerant Pearson's Chi-squared Test of Association",
      "topics": [
        "fast.chisq.test"
      ]
    },
    {
      "page": "fast.gtest",
      "title": "Fast Zero-Tolerant G-Test of Association",
      "topics": [
        "fast.gtest"
      ]
    },
    {
      "page": "fast.upsilon.test",
      "title": "Fast Upsilon Test of Association between Two Categorical Variables",
      "topics": [
        "fast.upsilon.test"
      ]
    },
    {
      "page": "modified.chisq.test",
      "title": "Zero-Tolerant Pearson's Chi-squared Test for Contingency Tables",
      "topics": [
        "modified.chisq.test"
      ]
    },
    {
      "page": "modified.gtest",
      "title": "Zero-Tolerant G-Test for Contingency Tables",
      "topics": [
        "modified.gtest"
      ]
    },
    {
      "page": "upsilon.test",
      "title": "Upsilon Test of Association for Count Data",
      "topics": [
        "upsilon.test"
      ]
    }
  ],
  "_rundeps": [
    "cli",
    "cpp11",
    "farver",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lifecycle",
    "R6",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "Rdpack",
    "rlang",
    "S7",
    "scales",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "upsilon_test_examples.Rmd",
      "filename": "upsilon_test_examples.html",
      "title": "Upsilon test by example",
      "author": "Xuye Luo and Mingzhou Song",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Promoting dominant function patterns",
        "Demoting non-dominant function patterns",
        "Robust to change in low expected count",
        "Lung transplant surgery type and outcome",
        "A contingency table showing similar testing results",
        "How to cite this document",
        "References"
      ],
      "created": "2026-01-06 11:40:07",
      "modified": "2026-03-07 13:20:08",
      "commits": 2
    }
  ],
  "_score": 2.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "upsilon",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-06-05T07:02:02.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "3bba8771cf6c6a06f26f811a0d24af33a724c8ef",
      "fileid": "b710e75c64eaf0531154fdebb1c60ba47d682dd2fb9ebe16d407c8bafdbaf74e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27000221143"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-06-05T07:01:49.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "3bba8771cf6c6a06f26f811a0d24af33a724c8ef",
      "fileid": "f2085950227441fc51f36c043b02517c360a71d7927e969e701c02e8c0dbe6aa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27000221143"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-06-05T07:02:02.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "3bba8771cf6c6a06f26f811a0d24af33a724c8ef",
      "fileid": "e388a4ead19eaefe5ada3aa2c16c5c13edcc587261213c0cb931625617f848c0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27000221143"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-06-05T07:01:55.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "3bba8771cf6c6a06f26f811a0d24af33a724c8ef",
      "fileid": "44f02afd2759e7b736caf6b5c5320faf39c5da1055319691b688a635ff4dc419",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27000221143"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-06-05T07:01:46.000Z",
      "arch": "emscripten",
      "commit": "3bba8771cf6c6a06f26f811a0d24af33a724c8ef",
      "fileid": "399f3339ab1fafae5ba0a4b7c7052eff54c50e9b1eced5a1eda726cbf0243855",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/27000221143"
    }
  ]
}