{ "_id": "6ac8197ede46216d5edd3b60", "Package": "SyncER", "Title": "Synchronicity Testing for Event Records", "Version": "1.0.0", "Authors@R": "person(\"Katleen\", \"Wils\", email = \"katleen.wils@ugent.be\",\nrole = c(\"aut\", \"cre\"))", "Description": "Evaluation of synchronous deposition across different\nevent records using a log-ratio approach, and syncing age-depth\nmodels based on the availability of isochrons. Following the\nmethodology of Wils & Ramisch (2026)\n. The synthetic example dataset\nused in the examples, tests and vignette is distributed\nseparately in the companion data package 'SyncERdata'.", "License": "GPL (>= 3)", "URL": "https://github.com/katleenwils/SyncER", "BugReports": "https://github.com/katleenwils/SyncER/issues", "Encoding": "UTF-8", "Config/testthat/edition": "3", "Config/roxygen2/version": "8.0.0", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-08 22:27:15 UTC", "User": "root" }, "Author": "Katleen Wils [aut, cre]", "Maintainer": "Katleen Wils ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2026-10-08 22:12:41 UTC", "RemoteUrl": "https://github.com/cran/SyncER", "RemoteRef": "HEAD", "RemoteSha": "0531b313d0fac81776823d2a5e522022f95582a7", "_user": "cran", "_type": "src", "_file": "SyncER_1.0.0.tar.gz", "_fileid": "https://r2.ropensci.org/9b2414f6c210a1c72f1ca3b65bbb9ef1a225ba4591fb7e09ef601d6dd28c3a87", "_filesize": 9800574, "_sha256": "9b2414f6c210a1c72f1ca3b65bbb9ef1a225ba4591fb7e09ef601d6dd28c3a87", "_expires": "2027-01-16T22:30:17.000Z", "_created": "2026-10-08T22:27:15.000Z", "_published": "2026-10-08T22:30:22.691Z", "_buildurl": "https://github.com/r-universe/cran/actions/runs/37852600205", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 113572371398, "time": 129, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11583043666" }, { "job": 113572371345, "time": 130, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11583401694" }, { "job": 113570378409, "time": 340, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11582608078" }, { "job": 113572371331, "time": 145, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11583401738" }, { "job": 113572371340, "time": 81, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11583475998" }, { "job": 113572371276, "time": 92, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11583565100" } ], "_upstream": "https://github.com/cran/SyncER", "_commit": { "id": "0531b313d0fac81776823d2a5e522022f95582a7", "author": "Katleen Wils ", "committer": "cran-robot ", "message": "version 1.0.0\n", "time": 1791497561 }, "_maintainer": { "name": "Katleen Wils", "email": "katleen.wils@ugent.be", "login": "katleenwils", "description": "", "uuid": 19281510 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "dplyr", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "readr", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "pracma", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "rbacon", "role": "Suggests" }, { "package": "rplum", "role": "Suggests" }, { "package": "SyncERdata", "version": ">= 1.0.0", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2026-41", "n": 1 } ], "_tags": [ { "name": "1.0.0", "date": "2026-10-08" } ], "_stars": 0, "_contributors": [ { "user": "katleenwils", "count": 1, "uuid": 19281510 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "followers": 629, "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SyncER" }, "_devurl": "https://github.com/katleenwils/syncer", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/SyncER.html" ], "_cranurl": false, "_exports": [ "age_model_input", "assign_nonsynchro_age", "bayesian_age_combination", "bp_datum", "build_age_input", "compute_event_ages", "compute_isochron_thresholds", "compute_overall_synchronicity", "compute_synchronicity_values", "compute_synchronized_ages", "load_event_ages", "load_horizon_names", "plot_bayesian_age_combination", "plot_pairwise_synchronicity_evaluation", "plot_synchronicity_evaluation", "print_validation_summary", "process_event_ages", "read_age_data", "read_age_model_output", "read_record_data", "syncer_setup", "synchronize_ages", "verify_synchronicity", "write_age_output_data" ], "_help": [ { "page": "age_model_input", "title": "Write input files for age-depth modelling and return the updated record metadata", "topics": [ "age_model_input" ] }, { "page": "assign_nonsynchro_age", "title": "Assign ages to non-synchronous horizons to use as older/younger than inputs", "topics": [ "assign_nonsynchro_age" ] }, { "page": "bayesian_age_combination", "title": "Bayesian combination of age probabilty density functions", "topics": [ "bayesian_age_combination" ] }, { "page": "bp_datum", "title": "Determine current BP datum (year - 1950)", "topics": [ "bp_datum" ] }, { "page": "build_age_input", "title": "Build input data structures compatible with Bacon and Plum age-depth modelling", "topics": [ "build_age_input" ] }, { "page": "compute_event_ages", "title": "Interpolate event ages from MCMC runs of Raw Bacon/Plum output files", "topics": [ "compute_event_ages" ] }, { "page": "compute_isochron_thresholds", "title": "Calculate synchronicity validation thresholds based on isochron ages and errors", "topics": [ "compute_isochron_thresholds" ] }, { "page": "compute_overall_synchronicity", "title": "Calculate overall synchronicity score using additive log-ratios", "topics": [ "compute_overall_synchronicity" ] }, { "page": "compute_synchronicity_values", "title": "Compute synchronicity score and precision for considered event deposits", "topics": [ "compute_synchronicity_values" ] }, { "page": "compute_synchronized_ages", "title": "Compute synchronized ages", "topics": [ "compute_synchronized_ages" ] }, { "page": "load_event_ages", "title": "Load and store event ages from Bacon/Plum output files", "topics": [ "load_event_ages" ] }, { "page": "load_horizon_names", "title": "Derive event-type variables from a defined horizon group", "topics": [ "load_horizon_names" ] }, { "page": "plot_bayesian_age_combination", "title": "Plot Bayesian age combination results", "topics": [ "plot_bayesian_age_combination" ] }, { "page": "plot_pairwise_synchronicity_evaluation", "title": "Create synchronicity evaluation plots per pairwise comparison of records", "topics": [ "plot_pairwise_synchronicity_evaluation" ] }, { "page": "plot_synchronicity_evaluation", "title": "Plot synchronicity evaluation plots per horizon across all records", "topics": [ "plot_synchronicity_evaluation" ] }, { "page": "print_validation_summary", "title": "Print summary of isochron-based validation thresholds", "topics": [ "print_validation_summary" ] }, { "page": "process_event_ages", "title": "Prepare age data for log-ratio transformation and calculate basic statistics", "topics": [ "process_event_ages" ] }, { "page": "read_age_data", "title": "Read age results of age-depth modelling for each of the event horizons", "topics": [ "read_age_data" ] }, { "page": "read_age_model_output", "title": "Read Bacon/Plum age-depth modelling output files", "topics": [ "read_age_model_output" ] }, { "page": "read_record_data", "title": "Load age input data and event depths", "topics": [ "read_record_data" ] }, { "page": "syncer_setup", "title": "Set up SyncER working directory and output folder", "topics": [ "syncer_setup" ] }, { "page": "synchronize_ages", "title": "Computes synchronized ages and plots Bayesian age combinations if used", "topics": [ "synchronize_ages" ] }, { "page": "verify_synchronicity", "title": "Write and plot synchronicity testing results for evaluation", "topics": [ "verify_synchronicity" ] }, { "page": "write_age_output_data", "title": "Write age data (including event ages) into CSV files", "topics": [ "write_age_output_data" ] } ], "_readme": "https://github.com/cran/SyncER/raw/HEAD/README.md", "_rundeps": [ "bit", "bit64", "cli", "clipr", "cpp11", "crayon", "dplyr", "farver", "generics", "ggplot2", "glue", "gtable", "hms", "isoband", "labeling", "lifecycle", "magrittr", "pillar", "pkgconfig", "pracma", "prettyunits", "progress", "R6", "RColorBrewer", "readr", "rlang", "S7", "scales", "stringi", "stringr", "tibble", "tidyselect", "tzdb", "utf8", "vctrs", "viridisLite", "vroom", "withr" ], "_vignettes": [ { "source": "workflow.Rmd", "filename": "workflow.html", "title": "SyncER Workflow", "engine": "knitr::rmarkdown", "headings": [ "Step 0: Load and set-up SyncER example data", "Step 1: Set up the SyncER workflow", "Step 2: Age-depth modelling", "Step 3: Evaluate synchronicity of isochrons", "Step 4: Set age difference of isochrons to zero", "Step 5: Create new precise age-depth models", "Step 6: Evaluate synchronicity", "Step 7: Iteratively improve age model precision" ], "created": "2026-10-08 22:12:41", "modified": "2026-10-08 22:12:41", "commits": 1 } ], "_score": 2.6989700043360187, "_indexed": false, "_nocasepkg": "syncer", "_universes": [ "cran", "katleenwils" ], "_indexurl": "https://katleenwils.r-universe.dev/SyncER", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.0", "date": "2026-10-08T22:29:25.000Z", "distro": "resolute", "commit": "0531b313d0fac81776823d2a5e522022f95582a7", "fileid": "https://r2.ropensci.org/988e151842f2645cf56fad11153828ebaa40f278805891566b671b04f90a97af", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/37852600205" }, { "r": "4.6.1", "os": "linux", "version": "1.0.0", "date": "2026-10-08T22:29:23.000Z", "distro": "resolute", "commit": "0531b313d0fac81776823d2a5e522022f95582a7", "fileid": "https://r2.ropensci.org/ba92f5f49ee529f026aadead28f58634db80805ca571b2d619e8ec20ad512a93", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/37852600205" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.0", "date": "2026-10-08T22:29:56.000Z", "commit": "0531b313d0fac81776823d2a5e522022f95582a7", "fileid": "https://r2.ropensci.org/61eb150da25f58df0a241f415e4ceeeb6762553168f62a33b09156b450b392ae", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/37852600205" }, { "r": "4.7.0", "os": "win", "version": "1.0.0", "date": "2026-10-08T22:28:27.000Z", "commit": "0531b313d0fac81776823d2a5e522022f95582a7", "fileid": "https://r2.ropensci.org/ded17d7bb9658a33048d34ae415e66e7680ca001b9892675e2b2310278b47f97", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/37852600205" }, { "r": "4.6.1", "os": "win", "version": "1.0.0", "date": "2026-10-08T22:28:41.000Z", "commit": "0531b313d0fac81776823d2a5e522022f95582a7", "fileid": "https://r2.ropensci.org/2f6b5f7d17ac94596053081171e293925daca9a238e4c4acbc56bf3fbbbfdd73", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/37852600205" } ] }