{
  "_id": "6a1548f7acfb0bcc41d58349",
  "Package": "SurvivalClusteringTree",
  "Type": "Package",
  "Title": "Clustering Analysis Using Survival Tree and Forest Algorithms",
  "Version": "1.1.3",
  "Date": "2026-02-23",
  "Authors@R": "c(person(\ngiven=\"Lu\",\nfamily=\"You\",\nrole=c(\"aut\",\"cre\"),\nemail=\"lu.you@epi.usf.edu\",\ncomment=\"Created the package. Maintains the package.\"),\nperson(\ngiven=\"Lauric\",\nfamily=\"Ferrat\",\nrole=c(\"aut\"),\nemail=\"l.a.ferrat@exeter.ac.uk\",\ncomment=\"Added functionality. Revised the package. Wrote the vignette.\"),\nperson(\ngiven=\"Hemang\",\nfamily=\"Parikh\",\nrole=c(\"aut\"),\nemail=\"hemang.parikh@epi.usf.edu\",\ncomment=\"Checked and revised the package.\"),\nperson(\ngiven=\"Yanan\",\nfamily=\"Huo\",\nrole=c(\"aut\"),\nemail=\"yananhoho@gmail.com\",\ncomment=\"Revised plotting functions of the package.\"),\nperson(\ngiven=\"Yuting\",\nfamily=\"Yang\",\nrole=c(\"aut\"),\nemail=\"yang.yuting@epi.usf.edu\",\ncomment=\"Added some data frame features.\"),\nperson(\ngiven=\"Jeffrey\",\nfamily=\"Krischer\",\nrole=c(\"ctb\"),\ncomment=\"Supervisor the medical research. Coauthor of the medical manuscript.\"),\nperson(\ngiven=\"Maria\",\nfamily=\"Redondo\",\nrole=c(\"ctb\"),\ncomment=\"Principal investigators of the medical research. Coauthor of the medical manuscript.\"),\nperson(\ngiven=\"Richard\",\nfamily=\"Oram\",\nrole=c(\"ctb\"),\ncomment=\"Coauthor of the medical manuscript.\"),\nperson(\ngiven=\"Andrea\",\nfamily=\"Steck\",\nrole=c(\"ctb\"),\ncomment=\"Coauthor of the medical manuscript.\"))",
  "Maintainer": "Lu You <lu.you@epi.usf.edu>",
  "Description": "An outcome-guided algorithm is developed to identify\nclusters of samples with similar characteristics and survival\nrate. The algorithm first builds a random forest and then\ndefines distances between samples based on the fitted random\nforest. Given the distances, we can apply hierarchical\nclustering algorithms to define clusters. Details about this\nmethod is described in\n<https://github.com/luyouepiusf/SurvivalClusteringTree>.",
  "License": "GPL (>= 2)",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-26 07:13:13 UTC",
    "User": "root"
  },
  "Author": "Lu You [aut, cre] (Created the package. Maintains the\npackage.), Lauric Ferrat [aut] (Added functionality. Revised\nthe package. Wrote the vignette.), Hemang Parikh [aut] (Checked\nand revised the package.), Yanan Huo [aut] (Revised plotting\nfunctions of the package.), Yuting Yang [aut] (Added some data\nframe features.), Jeffrey Krischer [ctb] (Supervisor the\nmedical research. Coauthor of the medical manuscript.), Maria\nRedondo [ctb] (Principal investigators of the medical research.\nCoauthor of the medical manuscript.), Richard Oram [ctb]\n(Coauthor of the medical manuscript.), Andrea Steck [ctb]\n(Coauthor of the medical manuscript.)",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-02-25 06:10:02 UTC",
  "RemoteUrl": "https://github.com/cran/SurvivalClusteringTree",
  "RemoteRef": "HEAD",
  "RemoteSha": "0ebb68f5debcf7821d61be9857a1d674a7eb94b3",
  "MD5sum": "968d2eedf82766ce26d4fdb272761a79",
  "_user": "cran",
  "_type": "src",
  "_file": "SurvivalClusteringTree_1.1.3.tar.gz",
  "_fileid": "6b7bb6de8d793852dc351e280990fec72e859973f527d09df306ea636841c0b0",
  "_filesize": 301748,
  "_sha256": "6b7bb6de8d793852dc351e280990fec72e859973f527d09df306ea636841c0b0",
  "_created": "2026-05-26T07:13:13.000Z",
  "_published": "2026-05-26T07:17:11.719Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77825183912,
      "time": 155,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7211019303"
    },
    {
      "job": 77825183946,
      "time": 186,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7211028217"
    },
    {
      "job": 77825183937,
      "time": 182,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7211027093"
    },
    {
      "job": 77825184034,
      "time": 183,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7211027454"
    },
    {
      "job": 77824668550,
      "time": 230,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7210974510"
    },
    {
      "job": 77825183957,
      "time": 151,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7211018296"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/26437814085",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/SurvivalClusteringTree",
  "_commit": {
    "id": "0ebb68f5debcf7821d61be9857a1d674a7eb94b3",
    "author": "Lu You <lu.you@epi.usf.edu>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.1.3\n",
    "time": 1771999802
  },
  "_maintainer": {
    "name": "Lu You",
    "email": "lu.you@epi.usf.edu",
    "login": "luyouepiusf",
    "description": "",
    "uuid": 71938007
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "survival",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "grid",
      "role": "Imports"
    },
    {
      "package": "formula.tools",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "tinytest",
      "role": "Suggests"
    },
    {
      "package": "miceRanger",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-09",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "1.1.3",
      "date": "2026-02-25"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "luyouepiusf",
      "count": 4,
      "uuid": 71938007
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 204,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SurvivalClusteringTree"
  },
  "_searchresults": 2,
  "_topics": [
    "openblas",
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/SurvivalClusteringTree.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/luyouepiusf/survivalclusteringtree",
  "_realowner": "luyouepiusf",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2023-09-11"
    },
    {
      "version": "1.1",
      "date": "2024-05-13"
    },
    {
      "version": "1.1.1",
      "date": "2024-05-24"
    },
    {
      "version": "1.1.3",
      "date": "2026-02-25"
    }
  ],
  "_exports": [
    "plot_survival_tree",
    "predict_distance_forest",
    "predict_distance_forest_matrix",
    "predict_distance_tree",
    "predict_distance_tree_matrix",
    "predict_weights",
    "predict_weights_matrix",
    "survival_forest",
    "survival_forest_matrix",
    "survival_tree",
    "survival_tree_matrix"
  ],
  "_help": [
    {
      "page": "SurvivalClusteringTree-package",
      "title": "Clustering Analysis Using Survival Tree and Forest Algorithms",
      "topics": [
        "SurvivalClusteringTree-package",
        "SurvivalClusteringTree"
      ]
    },
    {
      "page": "plot_survival_tree",
      "title": "Visualize the Fitted Survival Tree",
      "topics": [
        "plot_survival_tree"
      ]
    },
    {
      "page": "predict_distance_forest",
      "title": "Predict Distances Between Samples Based on a Survival Forest Fit (Data Supplied as a Dataframe)",
      "topics": [
        "predict_distance_forest"
      ]
    },
    {
      "page": "predict_distance_forest_matrix",
      "title": "Predict Distances Between Samples Based on a Survival Forest Fit (Data Supplied as Matrices)",
      "topics": [
        "predict_distance_forest_matrix"
      ]
    },
    {
      "page": "predict_distance_tree",
      "title": "Predict Distances Between Samples Based on a Survival Tree Fit (Data Supplied as a Dataframe)",
      "topics": [
        "predict_distance_tree"
      ]
    },
    {
      "page": "predict_distance_tree_matrix",
      "title": "Predict Distances Between Samples Based on a Survival Tree Fit (Data Supplied as Matrices)",
      "topics": [
        "predict_distance_tree_matrix"
      ]
    },
    {
      "page": "predict_weights",
      "title": "Predict Weights of Samples in Terminal Nodes Based on a Survival Tree Fit (Data Supplied as a Dataframe)",
      "topics": [
        "predict_weights"
      ]
    },
    {
      "page": "predict_weights_matrix",
      "title": "Predict Weights of Samples in Terminal Nodes Based on a Survival Tree Fit (Data Supplied as Matrices)",
      "topics": [
        "predict_weights_matrix"
      ]
    },
    {
      "page": "survival_forest",
      "title": "Build a Survival Forest (Data Supplied as a Dataframe)",
      "topics": [
        "survival_forest"
      ]
    },
    {
      "page": "survival_forest_matrix",
      "title": "Build a Survival Forest (Data Supplied as Matrices)",
      "topics": [
        "survival_forest_matrix"
      ]
    },
    {
      "page": "survival_tree",
      "title": "Build a Survival Tree (Data Supplied as a Dataframe)",
      "topics": [
        "survival_tree"
      ]
    },
    {
      "page": "survival_tree_matrix",
      "title": "Build a Survival Tree (Data Supplied as Matrices)",
      "topics": [
        "survival_tree_matrix"
      ]
    }
  ],
  "_rundeps": [
    "cli",
    "dplyr",
    "formula.tools",
    "generics",
    "glue",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "operator.tools",
    "pillar",
    "pkgconfig",
    "R6",
    "Rcpp",
    "RcppArmadillo",
    "rlang",
    "survival",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "user-guide.Rmd",
      "filename": "user-guide.html",
      "title": "User Guide to Package SurvivalClusteringTree",
      "engine": "knitr::rmarkdown",
      "headings": [
        "packages",
        "Simulation of data"
      ],
      "created": "2023-09-11 09:30:27",
      "modified": "2023-09-11 09:30:27",
      "commits": 1
    }
  ],
  "_score": 2,
  "_indexed": false,
  "_nocasepkg": "survivalclusteringtree",
  "_universes": [
    "cran"
  ],
  "_indexurl": "https://luyouepiusf.r-universe.dev/SurvivalClusteringTree",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.3",
      "date": "2026-05-26T07:15:42.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "0ebb68f5debcf7821d61be9857a1d674a7eb94b3",
      "fileid": "0c42025cf92f7b18956bbde327fe19dd979994f5987f634ce80a89a67f47634c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26437814085"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.3",
      "date": "2026-05-26T07:16:03.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "0ebb68f5debcf7821d61be9857a1d674a7eb94b3",
      "fileid": "5fa19c511a42ab32f0ba602978dcaee4e76a769ddedb47b00c1854be2b9b895c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26437814085"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.3",
      "date": "2026-05-26T07:16:04.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "0ebb68f5debcf7821d61be9857a1d674a7eb94b3",
      "fileid": "ec1a837fabbbf64cd14cc57336f262f6b4dca45efc703502e1c6c84bed7cb2ce",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26437814085"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.3",
      "date": "2026-05-26T07:16:00.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "0ebb68f5debcf7821d61be9857a1d674a7eb94b3",
      "fileid": "cb217901914dbda682029fb1c0829f8da39621f24f214d1e474e547539e80f84",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26437814085"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.3",
      "date": "2026-05-26T07:16:07.000Z",
      "arch": "emscripten",
      "commit": "0ebb68f5debcf7821d61be9857a1d674a7eb94b3",
      "fileid": "a254c7f6387b50fc48ad06cccb9e3ce14f0b16a0fa114ad2107c3277cdbafe5b",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26437814085"
    }
  ]
}