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  "Title": "Silly Putty Clustering",
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      "title": "Running SillyPutty From Multiple Random Initial Clusterings",
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        "plot,RandomSillyPutty,missing-method",
        "plot,RSPSummary,matrix-method",
        "plot,RSPSummary,missing-method",
        "RandomSillyPutty",
        "RandomSillyPutty-class",
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      "title": "Running SillyPutty",
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      "title": "Introduction to SillyPutty",
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        "title: \"Introduction to Silly Putty\"author: \"Dwayne Tally, Zachary B. Abrams, and Kevin R. Coombes\"date: \"r Sys.Date()\"output:rmarkdown::html_document:theme: journalhighlight: katevignette: >%\\VignetteIndexEntry",
        "Introduction",
        "Setup",
        "Generating and Formatting Data",
        "Assign Umpire Model Parameters",
        "Simulate Data",
        "Euclidean Distance Matrix",
        "Mercator Visualization",
        "Different Clustering Methods",
        "Hierarchical Clustering",
        "Graphing Truth",
        "PAM Clustering",
        "SillyPutty Clustering",
        "Combining SillyPutty With Hierarchical Clustering",
        "Finding the Number of Clusters With SillyPutty",
        "Appendix"
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      "modified": "2023-11-08 20:30:52",
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