{ "_id": "6a102c28acfb0bcc41c92f3b", "Package": "SSHAARP", "Version": "2.0.8", "Date": "2025-06-17", "Title": "Searching Shared HLA Amino Acid Residue Prevalence", "Authors@R": "c(person(\"Livia\", \"Tran\",\nrole = c(\"aut\", \"cre\"),\nemail = \"livia.tran@ucsf.edu\"),\nperson(\"Steven\", \"Mack\",\nrole= \"aut\",\nemail = \"steven.mack@ucsf.edu\"),\nperson(\"Josh\", \"Bredeweg\", role= \"ctb\"),\nperson(\"Dale\", \"Steinhardt\", role= \"ctb\"))", "Maintainer": "Livia Tran ", "Description": "Processes amino acid alignments produced by the\n'IPD-IMGT/HLA (Immuno Polymorphism-ImMunoGeneTics/Human\nLeukocyte Antigen) Database' to identify user-defined amino\nacid residue motifs shared across HLA alleles, HLA alleles, or\nHLA haplotypes, and calculates frequencies based on HLA allele\nfrequency data. 'SSHAARP' (Searching Shared HLA Amino Acid\nResidue Prevalence) uses 'Generic Mapping Tools (GMT)' software\nand the 'GMT' R package to generate global frequency heat maps\nthat illustrate the distribution of each user-defined map\naround the globe. 'SSHAARP' analyzes the allele frequency data\ndescribed by Solberg et al. (2008)\n, a global set of 497\npopulation samples from 185 published datasets, representing\n66,800 individuals total. Users may also specify their own\ndatasets, but file conventions must follow the prebundled\nSolberg dataset, or the mock haplotype dataset.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "LazyData": "true", "VignetteBuilder": "knitr", "SystemRequirements": "GMT (5 or 6), Ghostscript (>=9.6)", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-22 10:09:40 UTC", "User": "root" }, "Author": "Livia Tran [aut, cre], Steven Mack [aut], Josh Bredeweg [ctb],\nDale Steinhardt [ctb]", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2025-06-18 02:21:45 UTC", "RemoteUrl": "https://github.com/cran/SSHAARP", "RemoteRef": "HEAD", "RemoteSha": "03538a600e1f866f79b925c2ae02407d94881c4d", "MD5sum": "b50b571315b5302626996383300d99ff", "_user": "cran", "_type": "src", "_file": "SSHAARP_2.0.8.tar.gz", "_fileid": "397c0eccd6d8965a4c6e07c8d6a0cf19078f130322c57d840367cc8e18236edd", "_filesize": 3556176, "_sha256": 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