{ "_id": "6ae20bb03d0f299392dcf9f2", "Package": "SLOPE", "Title": "Sorted L1 Penalized Estimation", "Version": "2.1.1", "Authors@R": "c(\nperson(\n\"Johan\",\n\"Larsson\",\nrole = c(\"aut\", \"cre\"),\nemail = \"johan@jolars.co\",\ncomment = c(ORCID = \"0000-0002-4029-5945\")\n),\nperson(\n\"Jonas\",\n\"Wallin\",\nrole = \"aut\",\nemail = \"jonas.wallin@stat.lu.se\",\ncomment = c(ORCID = \"0000-0003-0381-6593\")\n),\nperson(\n\"Malgorzata\",\n\"Bogdan\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-0657-4342\")\n),\nperson(\"Ewout\", \"van den Berg\", role = \"aut\"),\nperson(\"Chiara\", \"Sabatti\", role = \"aut\"),\nperson(\"Emmanuel\", \"Candes\", role = \"aut\"),\nperson(\"Evan\", \"Patterson\", role = \"aut\"),\nperson(\"Weijie\", \"Su\", role = \"aut\"),\nperson(\"Jakub\", \"Kała\", role = \"aut\"),\nperson(\"Krystyna\", \"Grzesiak\", role = \"aut\"),\nperson(\"Mathurin\", \"Massias\", role = \"aut\"),\nperson(\"Quentin\", \"Klopfenstein\", role = \"aut\"),\nperson(\n\"Michal\",\n\"Burdukiewicz\",\ncomment = c(ORCID = \"0000-0001-8926-582X\"),\nrole = \"aut\"\n),\nperson(\n\"Jerome\",\n\"Friedman\",\nrole = \"ctb\",\ncomment = \"code adapted from 'glmnet'\"\n),\nperson(\n\"Trevor\",\n\"Hastie\",\nrole = \"ctb\",\ncomment = \"code adapted from 'glmnet'\"\n),\nperson(\n\"Rob\",\n\"Tibshirani\",\nrole = \"ctb\",\ncomment = \"code adapted from 'glmnet'\"\n),\nperson(\n\"Balasubramanian\",\n\"Narasimhan\",\nrole = \"ctb\",\ncomment = \"code adapted from 'glmnet'\"\n),\nperson(\n\"Noah\",\n\"Simon\",\nrole = \"ctb\",\ncomment = \"code adapted from 'glmnet'\"\n),\nperson(\n\"Junyang\",\n\"Qian\",\nrole = \"ctb\",\ncomment = \"code adapted from 'glmnet'\"\n)\n)", "Description": "Efficient implementations for Sorted L-One Penalized\nEstimation (SLOPE): generalized linear models regularized with\nthe sorted L1-norm (Bogdan et al. 2015). Supported models\ninclude ordinary least-squares regression, binomial regression,\nmultinomial regression, and Poisson regression. Both dense and\nsparse predictor matrices are supported. In addition, the\npackage features predictor screening rules that enable fast and\nefficient solutions to high-dimensional problems.", "License": "GPL-3", "URL": "https://jolars.github.io/SLOPE/, https://github.com/jolars/SLOPE", "BugReports": "https://github.com/jolars/SLOPE/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "Language": "en-US", "LazyData": "true", "RoxygenNote": "7.3.3", "SystemRequirements": "C++17", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-28 12:07:23 UTC", "User": "root" }, "Author": "Johan Larsson [aut, cre] (ORCID:\n), Jonas Wallin [aut]\n(ORCID: ), Malgorzata\nBogdan [aut] (ORCID: ),\nEwout van den Berg [aut], Chiara Sabatti [aut], Emmanuel Candes\n[aut], Evan Patterson [aut], Weijie Su [aut], Jakub Kała [aut],\nKrystyna Grzesiak [aut], Mathurin Massias [aut], Quentin\nKlopfenstein [aut], Michal Burdukiewicz [aut] (ORCID:\n), Jerome Friedman [ctb]\n(code adapted from 'glmnet'), Trevor Hastie [ctb] (code adapted\nfrom 'glmnet'), Rob Tibshirani [ctb] (code adapted from\n'glmnet'), Balasubramanian Narasimhan [ctb] (code adapted from\n'glmnet'), Noah Simon [ctb] (code adapted from 'glmnet'),\nJunyang Qian [ctb] (code adapted from 'glmnet')", "Maintainer": "Johan Larsson ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2026-08-29 14:34:25 UTC", "RemoteUrl": "https://github.com/cran/SLOPE", "RemoteRef": "HEAD", "RemoteSha": "f7137505fe51737ed782fd34e1ce5b6210a177a3", "_user": "cran", "_type": "src", "_file": "SLOPE_2.1.1.tar.gz", "_fileid": "https://r2.ropensci.org/534accb9590ce407ac2c2f68ffe46a2fba7318bb96c32a19d7379a0a6d169840", "_filesize": 1207087, "_sha256": "534accb9590ce407ac2c2f68ffe46a2fba7318bb96c32a19d7379a0a6d169840", "_expires": "2027-02-05T12:15:49.000Z", "_created": "2026-10-28T12:07:23.000Z", "_published": "2026-10-28T14:50:24.362Z", "_upstream": "https://github.com/cran/SLOPE", "_status": "success", "_maintainer": { "name": "Johan Larsson", "email": "johan@jolars.co", "login": "jolars", "mastodon": "@jolars@mastodon.social", "bluesky": "@jolars.co", "linkedin": "in/larssonj", "orcid": "0000-0002-4029-5945", "description": "Postdoc in statistics at the Department of Mathematical Sciences, University of Copenhagen", "uuid": 13087841 }, "_jobs": [ { "job": 122891858840, "time": 209, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "12814822067" }, { "job": 122891858365, "time": 263, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12815370618" }, { "job": 122891860378, "time": 227, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12815450215" }, { "job": 122891859581, "time": 212, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12814344203" }, { "job": 122891857519, "time": 390, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12814731788" }, { "job": 122891858305, "time": 201, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12814089841" }, { "job": 122891858709, "time": 394, "config": "windows-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "12815585397" }, { "job": 122891858651, "time": 322, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "12814772456" }, { "job": 122891858906, "time": 392, "config": "windows-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "12815910006" }, { "job": 122891858498, "time": 300, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "12814778004" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/40684536050", "_commit": { "id": "f7137505fe51737ed782fd34e1ce5b6210a177a3", "author": "Johan Larsson ", "committer": "cran-robot ", "message": "version 2.1.1\n", "time": 1788014065 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "BH", "role": "LinkingTo" }, { "package": "bigmemory", "role": "LinkingTo" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppEigen", "version": ">= 0.3.4.0.0", "role": "LinkingTo" }, { "package": "Matrix", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "Rcpp", "role": "Imports" }, { "package": "bigmemory", "role": "Suggests" }, { "package": "covr", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "spelling", "role": "Suggests" }, { "package": "testthat", "version": ">= 2.1.0", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 2, "_updates": [ { "week": "2025-44", "n": 1 }, { "week": "2025-46", "n": 1 }, { "week": "2026-05", "n": 1 }, { "week": "2026-13", "n": 1 }, { "week": "2026-35", "n": 1 } ], "_tags": [ { "name": "1.1.0", "date": "2025-10-30" }, { "name": "1.2.0", "date": "2025-11-11" }, { "name": "2.0.0", "date": "2026-01-28" }, { "name": "2.1.0", "date": "2026-03-28" }, { "name": "2.1.1", "date": "2026-08-29" } ], "_stars": 0, "_contributors": [ { "user": "jolars", "count": 9, "uuid": 13087841 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "followers": 634, "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 453, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SLOPE" }, "_mentions": 16, "_devurl": "https://github.com/jolars/slope", "_pkgdown": "https://jolars.github.io/SLOPE/", "_searchresults": 2, "_topics": [ "cpp", "openmp" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/SLOPE.html" ], "_homeurl": "https://github.com/jolars/slope", "_realowner": "jolars", "_cranurl": false, "_releases": [ { "version": "0.1.1", "date": "2015-04-27" }, { "version": "0.1.3", "date": "2015-11-03" }, { "version": "0.2.1", "date": "2020-04-16" }, { "version": "0.3.0", "date": "2020-07-02" }, { "version": "0.3.2", "date": "2020-07-10" }, { "version": "0.3.3", "date": "2021-03-17" }, { "version": "0.4.0", "date": "2021-12-10" }, { "version": "0.4.1", "date": "2022-03-14" }, { "version": "0.5.0", "date": "2022-06-10" }, { "version": "0.5.1", "date": "2024-07-09" }, { "version": "0.5.2", "date": "2025-02-01" }, { "version": "1.0.0", "date": "2025-06-30" }, { "version": "1.0.1", "date": "2025-07-02" }, { "version": "1.1.0", "date": "2025-10-30" }, { "version": "1.2.0", "date": "2025-11-11" }, { "version": "2.0.0", "date": "2026-01-28" }, { "version": "2.1.0", "date": "2026-03-28" }, { "version": "2.1.1", "date": "2026-08-29" } ], "_exports": [ "cvSLOPE", "plotClusters", "plotDiagnostics", "refit", "regularizationWeights", "score", "SLOPE", "sortedL1Prox", "trainSLOPE" ], "_datasets": [ { "name": "abalone", "title": "Abalone", "object": "abalone", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "bodyfat", "title": "Bodyfat", "object": "bodyfat", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "glioma", "title": "Glioma Metabolomics", "object": "glioma", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "heart", "title": "Heart Disease", "object": "heart", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "student", "title": "Student Performance", "object": "student", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "wine", "title": "Wine Cultivars", "object": "wine", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "abalone", "title": "Abalone", "concept": [ "datasets" ], "topics": [ "abalone" ] }, { "page": "bodyfat", "title": "Bodyfat", "concept": [ "datasets" ], "topics": [ "bodyfat" ] }, { "page": "coef.SLOPE", "title": "Obtain Coefficients", "concept": [ "SLOPE-methods" ], "topics": [ "coef.SLOPE" ] }, { "page": "cvSLOPE", "title": "Tune SLOPE with Cross-Validation", "concept": [ "model-tuning" ], "topics": [ "cvSLOPE" ] }, { "page": "deviance.SLOPE", "title": "Model Deviance", "concept": [ "SLOPE-methods" ], "topics": [ "deviance.SLOPE" ] }, { "page": "glioma", "title": "Glioma Metabolomics", "topics": [ "glioma" ] }, { "page": "heart", "title": "Heart Disease", "concept": [ "datasets" ], "topics": [ "heart" ] }, { "page": "plot.SLOPE", "title": "Plot Coefficients", "concept": [ "SLOPE-methods" ], "topics": [ "plot.SLOPE" ] }, { "page": "plot.TrainedSLOPE", "title": "Plot Results from Cross-Validation", "concept": [ "model-tuning" ], "topics": [ "plot.TrainedSLOPE" ] }, { "page": "plotClusters", "title": "Plot Cluster Structure", "topics": [ "plotClusters" ] }, { "page": "plotDiagnostics", "title": "Plot Results from Diagnostics Collected During Model Fitting", "topics": [ "plotDiagnostics" ] }, { "page": "predict.SLOPE", "title": "Generate Predictions from SLOPE Models", "concept": [ "SLOPE-methods" ], "topics": [ "predict.BinomialSLOPE", "predict.GaussianSLOPE", "predict.MultinomialSLOPE", "predict.PoissonSLOPE", "predict.SLOPE" ] }, { "page": "print.SLOPE", "title": "Print Results from SLOPE Fit", "concept": [ "SLOPE-methods" ], "topics": [ "print.SLOPE", "print.TrainedSLOPE" ] }, { "page": "print.summary_SLOPE", "title": "Print Summary of SLOPE Model", "topics": [ "print.summary_SLOPE" ] }, { "page": "print.summary_TrainedSLOPE", "title": "Print Summary of TrainedSLOPE Model", "topics": [ "print.summary_TrainedSLOPE" ] }, { "page": "refit", "title": "Refit SLOPE Model with Optimal Parameters", "concept": [ "model-tuning" ], "topics": [ "refit" ] }, { "page": "regularizationWeights", "title": "Generate Regularization (Penalty) Weights for SLOPE", "topics": [ "regularizationWeights" ] }, { "page": "score", "title": "Compute One of Several Loss Metrics on a New Data Set", "concept": [ "SLOPE-methods" ], "topics": [ "score", "score.BinomialSLOPE", "score.GaussianSLOPE", "score.MultinomialSLOPE", "score.PoissonSLOPE" ] }, { "page": "SLOPE", "title": "Sorted L-One Penalized Estimation", "topics": [ "SLOPE" ] }, { "page": "sortedL1Prox", "title": "Sorted L1 Proximal Operator", "topics": [ "sortedL1Prox" ] }, { "page": "student", "title": "Student Performance", "concept": [ "datasets" ], "topics": [ "student" ] }, { "page": "summary.SLOPE", "title": "Summarize SLOPE Model", "concept": [ "SLOPE-methods" ], "topics": [ "summary.SLOPE" ] }, { "page": "summary.TrainedSLOPE", "title": "Summarize TrainedSLOPE Model", "concept": [ "model-tuning" ], "topics": [ "summary.TrainedSLOPE" ] }, { "page": "trainSLOPE", "title": "Train a SLOPE Model", "concept": [ "model-tuning" ], "topics": [ "trainSLOPE" ] }, { "page": "wine", "title": "Wine Cultivars", "concept": [ "datasets" ], "topics": [ "wine" ] } ], "_pkglogo": "https://github.com/cran/SLOPE/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/cran/SLOPE/raw/HEAD/README.md", "_rundeps": [ "BH", "bigmemory", "bigmemory.sri", "lattice", "Matrix", "Rcpp", "RcppEigen", "uuid" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_vignettes": [ { "source": "introduction.Rmd", "filename": "introduction.html", "title": "An introduction to SLOPE", "author": "Johan Larsson", "engine": "knitr::rmarkdown", "headings": [ "Background", "An example", "Cross-validation", "False discovery rate", "References" ], "created": "2020-04-16 14:40:02", "modified": "2026-01-28 06:10:44", "commits": 7 }, { "source": "models.Rmd", "filename": "models.html", "title": "Models in SLOPE", "author": "Johan Larsson", "engine": "knitr::rmarkdown", "headings": [ "Models", "Gaussian Regression", "Logistic Regression", "Poisson Regression", "Numerical Considerations", "Multinomial Logistic Regression", "References" ], "created": "2026-01-28 06:10:44", "modified": "2026-01-28 06:10:44", "commits": 1 }, { "source": "solvers.Rmd", "filename": "solvers.html", "title": "Solvers in SLOPE", "author": "Johan Larsson", "engine": "knitr::rmarkdown", "headings": [ "Solvers", "Example", "References" ], "created": "2025-06-30 22:39:16", "modified": "2025-06-30 22:39:16", "commits": 1 } ], "_score": 5.653212513775344, "_indexed": false, "_nocasepkg": "slope", "_universes": [ "cran" ], "_indexurl": "https://jolars.r-universe.dev/SLOPE", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.1.1", "date": "2026-10-28T12:10:24.000Z", "distro": "resolute", "arch": "aarch64", "commit": "f7137505fe51737ed782fd34e1ce5b6210a177a3", "fileid": "https://r2.ropensci.org/763633f85f9dd7ab6dfdf5c7109a26f40ea5b26444546b9fa4c33fcb61ca4ed5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/40684536050" }, { "r": "4.7.0", "os": "linux", "version": "2.1.1", "date": "2026-10-28T12:10:55.000Z", "distro": "resolute", "arch": "x86_64", "commit": "f7137505fe51737ed782fd34e1ce5b6210a177a3", "fileid": "https://r2.ropensci.org/ae1843370541f619cec4cfb265097c94c2d076c676aae849def4ccd045b4aa5e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/40684536050" }, { "r": "4.6.1", "os": "linux", "version": "2.1.1", "date": "2026-10-28T12:10:43.000Z", "distro": "resolute", "arch": "aarch64", "commit": "f7137505fe51737ed782fd34e1ce5b6210a177a3", "fileid": "https://r2.ropensci.org/0092a3cbf0ab4b468f50255efda356655d95f624289d1729e475517ccef72de7", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/40684536050" }, { "r": "4.6.1", "os": "linux", "version": "2.1.1", "date": "2026-10-28T12:10:47.000Z", "distro": "resolute", "arch": "x86_64", "commit": "f7137505fe51737ed782fd34e1ce5b6210a177a3", "fileid": "https://r2.ropensci.org/25471e3eb3604eddd3387835c87c06d405849abcde81aedad47ed1d934893129", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/40684536050" }, { "r": "4.6.0", "os": "wasm", "version": "2.1.1", "date": "2026-10-28T12:10:53.000Z", "arch": "emscripten", "commit": "f7137505fe51737ed782fd34e1ce5b6210a177a3", "fileid": "https://r2.ropensci.org/c0fc0129a8af3e69ded9f45b189bd661027f100bd44312a17c9485e472604450", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/40684536050" }, { "r": "4.7.0", "os": "win", "version": "2.1.1", "date": "2026-10-28T12:12:28.000Z", "arch": "aarch64", "commit": "f7137505fe51737ed782fd34e1ce5b6210a177a3", "fileid": "https://r2.ropensci.org/3c5bd5fbc2b29e26a30e478939224294775df0f44f87f60c6750296157b1ce68", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/40684536050" }, { "r": "4.7.0", "os": "win", "version": "2.1.1", "date": "2026-10-28T12:10:15.000Z", "arch": "x86_64", "commit": "f7137505fe51737ed782fd34e1ce5b6210a177a3", "fileid": "https://r2.ropensci.org/0b0dc6feb365d8b7d3bdf1a60d461097abef0a4e6efe5d75dc208597c4d95d69", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/40684536050" }, { "r": "4.6.1", "os": "win", "version": "2.1.1", "date": "2026-10-28T12:12:31.000Z", "arch": "aarch64", "commit": "f7137505fe51737ed782fd34e1ce5b6210a177a3", "fileid": "https://r2.ropensci.org/e49ffcb8a10bcc1aa1f10ed4cd079004699f5176f19a7d771349b0fe2fe09f34", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/40684536050" }, { "r": "4.6.1", "os": "win", "version": "2.1.1", "date": "2026-10-28T12:10:00.000Z", "arch": "x86_64", "commit": "f7137505fe51737ed782fd34e1ce5b6210a177a3", "fileid": "https://r2.ropensci.org/0c3d401aa641f87f5029f184b083a84149bb0e78c6dc3ad7dc40cea71393e010", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/40684536050" } ] }