{ "_id": "6ab543adc18b73ce90b4f7ea", "Package": "SLGP", "Type": "Package", "Title": "Spatial Logistic Gaussian Process for Field Density Estimation", "Version": "2.0.0", "Authors@R": "c(person(given = \"Athénaïs\",\nfamily = \"Gautier\",\nrole = c(\"aut\", \"cre\"),\nemail = \"athenais.gautier@onera.fr\"))", "Maintainer": "Athénaïs Gautier ", "Description": "Provides tools for conditional and spatially dependent\ndensity estimation using Spatial Logistic Gaussian Processes\n(SLGPs). The approach represents probability densities through\nfinite-rank Gaussian process priors transformed via a spatial\nlogistic density transformation, enabling flexible\nnon-parametric modeling of heterogeneous data. Functionality\nincludes density prediction, quantile and moment estimation,\nsampling methods, and preprocessing routines for basis\nfunctions. Applications arise in spatial statistics, machine\nlearning, and uncertainty quantification. The methodology\nbuilds on the framework of Leonard (1978)\n, Lenk (1988)\n, Tokdar (2007)\n, Tokdar (2010)\n, and is further aligned with recent\ndevelopments in Bayesian non-parametric modelling: see Gautier\n(2023) , and Gautier (2025)\n).", "License": "GPL (>= 3)", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "Biarch": "true", "SystemRequirements": "GNU make", "VignetteBuilder": "knitr", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-09-24 15:28:50 UTC", "User": "root" }, "Author": "Athénaïs Gautier [aut, cre]", "Config/pak/sysreqs": "make", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2026-09-24 15:16:22 UTC", "RemoteUrl": "https://github.com/cran/SLGP", "RemoteRef": "HEAD", "RemoteSha": "49248e330947c52b4ffe4f6a3bf4af54ab80d431", "_user": "cran", "_type": "src", "_file": "SLGP_2.0.0.tar.gz", "_fileid": "https://r2.ropensci.org/d5c7a75fd524a8b4052bc7da4bea776a2f3aeaa0e536ba7b659c97da9ed36359", "_filesize": 2197929, "_sha256": "d5c7a75fd524a8b4052bc7da4bea776a2f3aeaa0e536ba7b659c97da9ed36359", "_expires": "2027-01-02T15:37:14.000Z", "_created": "2026-09-24T15:28:50.000Z", "_published": "2026-09-24T15:37:16.847Z", "_jobs": [ { "job": 107704640467, "time": 266, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "10817345240" }, { "job": 107704640330, "time": 353, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10816757298" }, { "job": 107704640517, "time": 256, "config": "linux-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "10817230558" }, { "job": 107704640542, "time": 296, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10816054507" }, { "job": 107701385872, "time": 460, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10816512018" }, { "job": 107704640399, "time": 237, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10816323515" }, { "job": 107704640357, "time": 368, "config": "windows-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "10816941973" }, { "job": 107704640419, "time": 304, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10816458722" }, { "job": 107704640274, "time": 374, "config": "windows-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "10817131323" }, { "job": 107704640474, "time": 323, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10816632468" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/cran/actions/runs/36019723748", "_status": "success", "_upstream": "https://github.com/cran/SLGP", "_commit": { "id": "49248e330947c52b4ffe4f6a3bf4af54ab80d431", "author": "Athénaïs Gautier ", "committer": "cran-robot ", "message": "version 2.0.0\n", "time": 1790262982 }, "_maintainer": { "name": "Athénaïs Gautier", "email": "athenais.gautier@onera.fr" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "BH", "version": ">= 1.66.0", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 0.12.0", "role": "LinkingTo" }, { "package": "RcppEigen", "version": ">= 0.3.3.3.0", "role": "LinkingTo" }, { "package": "rstan", "version": ">= 2.18.1", "role": "LinkingTo" }, { "package": "StanHeaders", "version": ">= 2.21.0", "role": "LinkingTo" }, { "package": "stats", "role": "Imports" }, { "package": "DiceDesign", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "mvnfast", "role": "Imports" }, { "package": "Rcpp", "version": ">= 0.12.0", "role": "Imports" }, { "package": "RcppParallel", "version": ">= 5.0.1", "role": "Imports" }, { "package": "rstan", "version": ">= 2.18.1", "role": "Imports" }, { "package": "rstantools", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "tidyr", "role": "Suggests" }, { "package": "dplyr", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "ggpubr", "role": "Suggests" }, { "package": "viridis", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2026-04", "n": 1 }, { "week": "2026-08", "n": 1 }, { "week": "2026-34", "n": 1 }, { "week": "2026-37", "n": 1 }, { "week": "2026-39", "n": 1 } ], "_tags": [ { "name": "1.0.1", "date": "2026-01-20" }, { "name": "1.0.2", "date": "2026-02-17" }, { "name": "1.1.0", "date": "2026-08-21" }, { "name": "1.1.1", "date": "2026-09-07" }, { "name": "2.0.0", "date": "2026-09-24" } ], "_stars": 0, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "followers": 630, "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 386, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SLGP" }, "_searchresults": 12, "_topics": [ "onetbb", "cpp" ], "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/SLGP.html" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "1.0.0", "date": "2025-09-05" }, { "version": "1.0.1", "date": "2026-01-20" }, { "version": "1.0.2", "date": "2026-02-17" }, { "version": "1.1.0", "date": "2026-08-21" }, { "version": "1.1.1", "date": "2026-09-08" } ], "_exports": [ "coef", "formula", "nobs", "plot", "predict", "predictSLGP_cdf", "predictSLGP_moments", "predictSLGP_newNode", "predictSLGP_quantiles", "print", "retrainSLGP", "sampleSLGP", "show", "simulate", "slgp", "SLGP", "summary", "timing", "update" ], "_help": [ { "page": "SLGP-package", "title": "SLGP: A package for spatially dependent probability distributions", "topics": [ "SLGP-package" ] }, { "page": "coef-SLGP-method", "title": "Extract the coefficient draws of an SLGP model", "topics": [ "coef,SLGP-method" ] }, { "page": "formula-SLGP-method", "title": "Model formula of an SLGP object", "topics": [ "formula,SLGP-method" ] }, { "page": "nobs-SLGP-method", "title": "Number of observations used to fit an SLGP model", "topics": [ "nobs,SLGP-method" ] }, { "page": "plot-SLGP-missing-method", "title": "Plot the estimated density field of an SLGP model", "topics": [ "plot,SLGP,missing-method" ] }, { "page": "predict-SLGP-method", "title": "Predict from a fitted SLGP model", "topics": [ "predict,SLGP-method" ] }, { "page": "predictSLGP_cdf", "title": "Predict cumulative distribution values at new locations using a SLGP model", "topics": [ "predictSLGP_cdf" ] }, { "page": "predictSLGP_moments", "title": "Predict conditional moments", "topics": [ "predictSLGP_moments" ] }, { "page": "predictSLGP_newNode", "title": "Predict densities at new covariate locations using a given SLGP model", "topics": [ "predictSLGP_newNode" ] }, { "page": "predictSLGP_quantiles", "title": "Predict conditional quantiles", "topics": [ "predictSLGP_quantiles" ] }, { "page": "print-SLGP-method", "title": "Print a brief description of an SLGP model", "topics": [ "print,SLGP-method", "show,SLGP-method" ] }, { "page": "print.summary.SLGP", "title": "Print method for SLGP summaries", "topics": [ "print.summary.SLGP" ] }, { "page": "retrainSLGP", "title": "Refit an SLGP model", "topics": [ "retrainSLGP" ] }, { "page": "sampleSLGP", "title": "Draw conditional samples", "topics": [ "sampleSLGP" ] }, { "page": "simulate-SLGP-method", "title": "Simulate responses from a fitted SLGP model", "topics": [ "simulate,SLGP-method" ] }, { "page": "slgp", "title": "Fit a Spatial Logistic Gaussian Process model", "topics": [ "slgp" ] }, { "page": "SLGP-class", "title": "The SLGP S4 Class: Spatial Logistic Gaussian Process Model", "topics": [ "SLGP", "SLGP-class" ] }, { "page": "summary-SLGP-method", "title": "Summarise a fitted SLGP model", "topics": [ "summary,SLGP-method" ] }, { "page": "timing", "title": "Wall-clock cost of fitting an SLGP model", "topics": [ "timing", "timing,SLGP-method" ] }, { "page": "update-SLGP-method", "title": "Re-fit an SLGP model under a new method or with new data", "topics": [ "update,SLGP-method" ] } ], "_rundeps": [ "abind", "backports", "BH", "callr", "checkmate", "cli", "cpp11", "desc", "DiceDesign", "distributional", "farver", "generics", "ggplot2", "glue", "gridExtra", "gtable", "inline", "isoband", "labeling", "lifecycle", "loo", "magrittr", "matrixStats", "mvnfast", "numDeriv", "otel", "pillar", "pkgbuild", "pkgconfig", "posterior", "processx", "ps", "QuickJSR", "R6", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppParallel", "rlang", "rstan", "rstantools", "S7", "scales", "StanHeaders", "tensorA", "tibble", "utf8", "vctrs", "viridisLite", "withr" ], "_sysdeps": [ { "shlib": "libtbb", "package": "libtbb12", "headers": "libtbb-dev", "source": "onetbb", "version": "2022.3.0-2", "name": "onetbb", "homepage": "https://uxlfoundation.github.io/oneTBB/", "description": "parallelism library for C++ - runtime files" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "IntroductionSLGP.Rmd", "filename": "IntroductionSLGP.html", "title": "Introduction to SLGP Package", "author": "Athénaïs Gautier", "engine": "knitr::rmarkdown", "headings": [ "Dataset", "Scatterplot: long vs depth", "Histogram: Distribution of depth by 'long' bin", "Comparing the estimation to data", "Laplace approximation estimate", "MCMC estimate", "By-products of the estimation", "References" ], "created": "2025-09-05 20:50:02", "modified": "2026-09-24 15:16:22", "commits": 3 }, { "source": "SLGPdiscrete.Rmd", "filename": "SLGPdiscrete.html", "title": "SLGP with integer outputs", "author": "Athénaïs Gautier", "engine": "knitr::rmarkdown", "headings": [ "Using SLGPs for discrete distributions", "Compute normalized frequencies per long_bin", "Histogram: Distribution of mag by 'long' bin", "References" ], "created": "2025-09-05 20:50:02", "modified": "2026-09-24 15:16:22", "commits": 3 } ], "_score": 3.079181246047625, "_indexed": true, "_nocasepkg": "slgp", "_universes": [ "cran" ], "_previous": "1.1.1", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.0.0", "date": "2026-09-24T15:33:02.000Z", "distro": "resolute", "arch": "aarch64", "commit": "49248e330947c52b4ffe4f6a3bf4af54ab80d431", "fileid": "https://r2.ropensci.org/e128ded3c51af294470352012c16705c0994ae3074d675b2acda349c95e38c32", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/36019723748" }, { "r": "4.7.0", "os": "linux", "version": "2.0.0", "date": "2026-09-24T15:34:01.000Z", "distro": "resolute", "arch": "x86_64", "commit": "49248e330947c52b4ffe4f6a3bf4af54ab80d431", "fileid": "https://r2.ropensci.org/25c249d95fc722b266a8fafb1aed9e12762fac23197f64a580dcbb13a22e5abd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/36019723748" }, { "r": "4.6.1", "os": "linux", "version": "2.0.0", "date": "2026-09-24T15:32:58.000Z", "distro": "resolute", "arch": "aarch64", "commit": "49248e330947c52b4ffe4f6a3bf4af54ab80d431", "fileid": "https://r2.ropensci.org/5a0a959d23368aa8f2fbd83c186ca26a1a5d589bbf809cc0aa09f34f25b37a2d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/36019723748" }, { "r": "4.6.1", "os": "linux", "version": "2.0.0", "date": "2026-09-24T15:33:17.000Z", "distro": "resolute", "arch": "x86_64", "commit": "49248e330947c52b4ffe4f6a3bf4af54ab80d431", "fileid": "https://r2.ropensci.org/a90eb4311f5f34cd667c49a7c88a6240425453a3d70db2896c47da389bf73959", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/36019723748" }, { "r": "4.6.0", "os": "wasm", "version": "2.0.0", "date": "2026-09-24T15:33:40.000Z", "arch": "emscripten", "commit": "49248e330947c52b4ffe4f6a3bf4af54ab80d431", "fileid": "https://r2.ropensci.org/a67a6894e6b8ccc1a790f3da4023adc10feb9db504d3627cbcd0015edd97645d", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/36019723748" }, { "r": "4.7.0", "os": "win", "version": "2.0.0", "date": "2026-09-24T15:34:20.000Z", "arch": "aarch64", "commit": "49248e330947c52b4ffe4f6a3bf4af54ab80d431", "fileid": "https://r2.ropensci.org/747c3fd88d9d81b59097b21e8590713988b2f59c72f9500c3c9a3c0f651f4d7a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/36019723748" }, { "r": "4.7.0", "os": "win", "version": "2.0.0", "date": "2026-09-24T15:31:59.000Z", "arch": "x86_64", "commit": "49248e330947c52b4ffe4f6a3bf4af54ab80d431", "fileid": "https://r2.ropensci.org/9a98581b46b9f381d518786816e3a3b02ec42c09d91a0c834e20528bfdb31d0a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/36019723748" }, { "r": "4.6.1", "os": "win", "version": "2.0.0", "date": "2026-09-24T15:34:29.000Z", "arch": "aarch64", "commit": "49248e330947c52b4ffe4f6a3bf4af54ab80d431", "fileid": "https://r2.ropensci.org/d72a3a4fc95059605577e34c97081d911aadcbfab80aaa05cf7459f96d42c650", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/36019723748" }, { "r": "4.6.1", "os": "win", "version": "2.0.0", "date": "2026-09-24T15:32:36.000Z", "arch": "x86_64", "commit": "49248e330947c52b4ffe4f6a3bf4af54ab80d431", "fileid": "https://r2.ropensci.org/9c8b436aa2f3b3f6c15a53672591649ddae6809dedeee41dc95f687ab56e8492", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/36019723748" } ] }