{ "_id": "6a1ef5a4b401979e73416d5e", "Package": "SIRmcmc", "Type": "Package", "Title": "Compartmental Susceptible-Infectious-Recovered (SIR) Model of\nCommunity and Household Infection", "Version": "1.1.1", "Date": "2023-12-22", "Author": "F Scott Dahlgren and Ivo M Foppa", "Maintainer": "F Scott Dahlgren ", "Description": "We build an Susceptible-Infectious-Recovered (SIR) model\nwhere the rate of infection is the sum of the household rate\nand the community rate. We estimate the posterior distribution\nof the parameters using the Metropolis algorithm. Further\ndetails may be found in: F Scott Dahlgren, Ivo M Foppa, Melissa\nS Stockwell, Celibell Y Vargas, Philip LaRussa, Carrie Reed\n(2021) \"Household transmission of influenza A and B within a\nprospective cohort during the 2013-2014 and 2014-2015 seasons\"\n.", "License": "GPL (>= 2)", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-19 06:48:42 UTC", "User": "root" }, "Repository": "https://cran.r-universe.dev", "Date/Publication": "2024-01-12 02:40:25 UTC", "RemoteUrl": "https://github.com/cran/SIRmcmc", "RemoteRef": "HEAD", "RemoteSha": "3b5bc0a4197a81dfc6bb5c669738569d773a2e83", "MD5sum": "f95a7b66025e23b35d1c99a4ed85e6ef", "_user": "cran", "_type": "src", "_file": "SIRmcmc_1.1.1.tar.gz", "_fileid": "5d1f6a0627fcea7cf799ee42d0b047900e91791e7d1e80c339a2f8ebf4060f9d", "_filesize": 122563, "_sha256": "5d1f6a0627fcea7cf799ee42d0b047900e91791e7d1e80c339a2f8ebf4060f9d", "_created": "2026-05-19T06:48:42.000Z", "_published": "2026-06-02T15:24:20.434Z", "_distro": "noble", "_jobs": [ { "job": 79107272094, "time": 105, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7076703151" }, { "job": 79107272103, "time": 113, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7076705451" }, { "job": 79107273039, "time": 115, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7076706036" }, { "job": 79107272365, "time": 103, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7076702684" }, { "job": 79107271179, "time": 163, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7076673204" }, { "job": 79107270808, "time": 95, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7362141822" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/26081051688", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/SIRmcmc", "_commit": { "id": "3b5bc0a4197a81dfc6bb5c669738569d773a2e83", "author": "F Scott Dahlgren ", "committer": "cran-robot ", "message": "version 1.1.1\n", "time": 1705027225 }, "_maintainer": { "name": "F Scott Dahlgren", "email": "fdahlgr@gmail.com" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 0.12.15", "role": "Imports" }, { "package": "methods", "role": "Imports" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 224, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SIRmcmc" }, "_searchresults": 0, "_topics": [ "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/SIRmcmc.html", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "1.1", "date": "2021-11-23" }, { "version": "1.1.1", "date": "2024-01-11" } ], "_exports": [ "community_attack_rate", "household_transmission", "MCMC_date", "prior", "secondary_attack_rate", "unifprior" ], "_datasets": [ { "name": "hh.transmission", "title": "Simulated data under the SIR.", "object": "hh.transmission", "file": "hh.transmission.epsilon.RData", "class": [ "data.frame" ], "fields": [ "household", "onset", "transmission" ], "rows": 1000, "table": true, "tojson": true }, { "name": "hh.transmission.epsilon", "title": "Simulated data under SIR, with covariates.", "object": "hh.transmission.epsilon", "file": "hh.transmission.epsilon.RData", "class": [ "data.frame" ], "fields": [ "household", "onset", "transmission", "epsilon" ], "rows": 2000, "table": true, "tojson": true } ], "_help": [ { "page": "community_attack_.rate", "title": "Compute the community attack rate", "topics": [ "community_attack_rate" ] }, { "page": "hh.transmission", "title": "Simulated data under the SIR.", "topics": [ "hh.transmission" ] }, { "page": "hh.transmission.epsilon", "title": "Simulated data under SIR, with covariates.", "topics": [ "hh.transmission.epsilon" ] }, { "page": "household_transmission", "title": "Estimate parameters from SIR model", "topics": [ "household_transmission" ] }, { "page": "MCMC_date", "title": "Convert dates to a list of extendend natural numbers.", "topics": [ "MCMC_date" ] }, { "page": "prior", "title": "Compute prior probability of parameters", "topics": [ "prior" ] }, { "page": "secondary_attack_rate", "title": "Compute the secondary attack rate", "topics": [ "secondary_attack_rate" ] }, { "page": "unifprior", "title": "A uniform prior on the model parameters", "topics": [ "unifprior" ] } ], "_rundeps": [ "Rcpp" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", 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