{
  "_id": "6a3d891ea319ef941447bf8a",
  "Package": "SIEVEseq",
  "Title": "Unified Differential Expression, Variability and Skewness\nAnalysis for RNA-Seq Data",
  "Version": "0.0.0",
  "Date": "2026-06-07",
  "Authors@R": "c(\nperson(\"Hongxiang\", \"Li\", email = \"hxli@ynnu.edu.cn\", role = c(\"aut\", \"cre\")),\nperson(\"Tsung Fei\", \"Khang\", email = \"tfkhang@um.edu.my\", role = \"aut\"))",
  "Maintainer": "Hongxiang Li <hxli@ynnu.edu.cn>",
  "Description": "Provides a unified framework for the simultaneous testing\nof differential expression, variability, and skewness of genes\nusing RNA-Seq data. The framework adopts a compositional data\nanalysis approach for modelling RNA-Seq count data, applies the\ncentered log-ratio transformation to obtain continuous\nvariables, and uses the skew-normal distribution for\nstatistical inference. Methods are described in Li and Khang\n(bioRxiv preprint, 2024, version 3)\n<doi:10.1101/2024.04.09.588804>.",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/Divo-Lee/SIEVEseq",
  "License": "GPL (>= 2)",
  "Encoding": "UTF-8",
  "LazyData": "TRUE",
  "Config/roxygen2/version": "8.0.0",
  "Config/testthat/edition": "3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-25 19:58:19 UTC",
    "User": "root"
  },
  "Author": "Hongxiang Li [aut, cre], Tsung Fei Khang [aut]",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-06-25 18:28:45 UTC",
  "RemoteUrl": "https://github.com/cran/SIEVEseq",
  "RemoteRef": "HEAD",
  "RemoteSha": "c610429b4510de96c06dafb247cbf88841564a92",
  "MD5sum": "cd48d35bc0c70304cf0211102344825f",
  "_user": "cran",
  "_type": "src",
  "_file": "SIEVEseq_0.0.0.tar.gz",
  "_fileid": "7bd82cbccc864f758828fd7e2431fb8ff4fd6333a266a18c1c9c3f9e81eb9980",
  "_filesize": 4735970,
  "_sha256": "7bd82cbccc864f758828fd7e2431fb8ff4fd6333a266a18c1c9c3f9e81eb9980",
  "_created": "2026-06-25T19:58:19.000Z",
  "_published": "2026-06-25T20:01:34.327Z",
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 83525752419,
      "time": 153,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7889441152"
    },
    {
      "job": 83525752407,
      "time": 141,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7889437286"
    },
    {
      "job": 83524993891,
      "time": 235,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7889381681"
    },
    {
      "job": 83525752399,
      "time": 116,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7889427190"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/28196603871",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/SIEVEseq",
  "_commit": {
    "id": "c610429b4510de96c06dafb247cbf88841564a92",
    "author": "Hongxiang Li <hxli@ynnu.edu.cn>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.0.0\n",
    "time": 1782412125
  },
  "_maintainer": {
    "name": "Hongxiang Li",
    "email": "hxli@ynnu.edu.cn"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "sn",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-26",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.0.0",
      "date": "2026-06-25"
    }
  ],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 611,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SIEVEseq"
  },
  "_devurl": "https://github.com/divo-lee/sieveseq",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/SIEVEseq.html",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.0.0",
      "date": "2026-06-25"
    }
  ],
  "_exports": [
    "clr.SN.fit",
    "clrDE",
    "clrDV",
    "clrSeq",
    "clrSIEVE",
    "SN.plot",
    "violin.plot.SIEVE"
  ],
  "_datasets": [
    {
      "name": "clrCounts1",
      "title": "Simulated CLR-transformed count table",
      "object": "clrCounts1",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "sample1",
        "sample2",
        "sample3",
        "sample4",
        "sample5",
        "sample6",
        "sample7",
        "sample8",
        "sample9",
        "sample10",
        "sample11",
        "sample12",
        "sample13",
        "sample14",
        "sample15",
        "sample16",
        "sample17",
        "sample18",
        "sample19",
        "sample20",
        "sample21",
        "sample22",
        "sample23",
        "sample24",
        "sample25",
        "sample26",
        "sample27",
        "sample28",
        "sample29",
        "sample30",
        "sample31",
        "sample32",
        "sample33",
        "sample34",
        "sample35",
        "sample36",
        "sample37",
        "sample38",
        "sample39",
        "sample40",
        "sample41",
        "sample42",
        "sample43",
        "sample44",
        "sample45",
        "sample46",
        "sample47",
        "sample48",
        "sample49",
        "sample50",
        "sample51",
        "sample52",
        "sample53",
        "sample54",
        "sample55",
        "sample56",
        "sample57",
        "sample58",
        "sample59",
        "sample60",
        "sample61",
        "sample62",
        "sample63",
        "sample64",
        "sample65",
        "sample66",
        "sample67",
        "sample68",
        "sample69",
        "sample70",
        "sample71",
        "sample72",
        "sample73",
        "sample74",
        "sample75",
        "sample76",
        "sample77",
        "sample78",
        "sample79",
        "sample80",
        "sample81",
        "sample82",
        "sample83",
        "sample84",
        "sample85",
        "sample86",
        "sample87",
        "sample88",
        "sample89",
        "sample90",
        "sample91",
        "sample92",
        "sample93",
        "sample94",
        "sample95",
        "sample96",
        "sample97",
        "sample98",
        "sample99",
        "sample100",
        "sample101",
        "sample102",
        "sample103",
        "sample104",
        "sample105",
        "sample106",
        "sample107",
        "sample108",
        "sample109",
        "sample110",
        "sample111",
        "sample112",
        "sample113",
        "sample114",
        "sample115",
        "sample116",
        "sample117",
        "sample118",
        "sample119",
        "sample120",
        "sample121",
        "sample122",
        "sample123",
        "sample124",
        "sample125",
        "sample126",
        "sample127",
        "sample128",
        "sample129",
        "sample130",
        "sample131",
        "sample132",
        "sample133",
        "sample134",
        "sample135",
        "sample136",
        "sample137",
        "sample138",
        "sample139",
        "sample140",
        "sample141",
        "sample142",
        "sample143",
        "sample144",
        "sample145",
        "sample146",
        "sample147",
        "sample148",
        "sample149",
        "sample150",
        "sample151",
        "sample152",
        "sample153",
        "sample154",
        "sample155",
        "sample156",
        "sample157",
        "sample158",
        "sample159",
        "sample160",
        "sample161",
        "sample162",
        "sample163",
        "sample164",
        "sample165",
        "sample166",
        "sample167",
        "sample168",
        "sample169",
        "sample170",
        "sample171",
        "sample172",
        "sample173",
        "sample174",
        "sample175",
        "sample176",
        "sample177",
        "sample178",
        "sample179",
        "sample180",
        "sample181",
        "sample182",
        "sample183",
        "sample184",
        "sample185",
        "sample186",
        "sample187",
        "sample188",
        "sample189",
        "sample190",
        "sample191",
        "sample192",
        "sample193",
        "sample194",
        "sample195",
        "sample196",
        "sample197",
        "sample198",
        "sample199",
        "sample200",
        "sample201",
        "sample202",
        "sample203",
        "sample204",
        "sample205",
        "sample206",
        "sample207",
        "sample208",
        "sample209",
        "sample210",
        "sample211",
        "sample212",
        "sample213",
        "sample214",
        "sample215",
        "sample216",
        "sample217",
        "sample218",
        "sample219",
        "sample220",
        "sample221",
        "sample222",
        "sample223",
        "sample224",
        "sample225",
        "sample226",
        "sample227",
        "sample228",
        "sample229",
        "sample230",
        "sample231",
        "sample232",
        "sample233",
        "sample234",
        "sample235",
        "sample236",
        "sample237",
        "sample238",
        "sample239",
        "sample240",
        "sample241",
        "sample242",
        "sample243",
        "sample244",
        "sample245",
        "sample246",
        "sample247",
        "sample248",
        "sample249",
        "sample250",
        "sample251",
        "sample252",
        "sample253",
        "sample254",
        "sample255",
        "sample256",
        "sample257",
        "sample258",
        "sample259",
        "sample260",
        "sample261",
        "sample262",
        "sample263",
        "sample264",
        "sample265",
        "sample266",
        "sample267",
        "sample268",
        "sample269",
        "sample270",
        "sample271",
        "sample272",
        "sample273",
        "sample274",
        "sample275",
        "sample276",
        "sample277",
        "sample278",
        "sample279",
        "sample280",
        "sample281",
        "sample282",
        "sample283",
        "sample284",
        "sample285",
        "sample286",
        "sample287",
        "sample288",
        "sample289",
        "sample290",
        "sample291",
        "sample292",
        "sample293",
        "sample294",
        "sample295",
        "sample296",
        "sample297",
        "sample298",
        "sample299",
        "sample300",
        "sample301",
        "sample302",
        "sample303",
        "sample304",
        "sample305",
        "sample306",
        "sample307",
        "sample308",
        "sample309",
        "sample310",
        "sample311",
        "sample312",
        "sample313",
        "sample314",
        "sample315",
        "sample316",
        "sample317",
        "sample318",
        "sample319",
        "sample320",
        "sample321",
        "sample322",
        "sample323",
        "sample324",
        "sample325",
        "sample326",
        "sample327",
        "sample328",
        "sample329",
        "sample330",
        "sample331",
        "sample332",
        "sample333",
        "sample334",
        "sample335",
        "sample336",
        "sample337",
        "sample338",
        "sample339",
        "sample340",
        "sample341",
        "sample342",
        "sample343",
        "sample344",
        "sample345",
        "sample346",
        "sample347",
        "sample348",
        "sample349",
        "sample350",
        "sample351",
        "sample352",
        "sample353",
        "sample354",
        "sample355",
        "sample356",
        "sample357",
        "sample358",
        "sample359",
        "sample360",
        "sample361",
        "sample362",
        "sample363",
        "sample364",
        "sample365",
        "sample366",
        "sample367",
        "sample368",
        "sample369",
        "sample370",
        "sample371",
        "sample372",
        "sample373",
        "sample374",
        "sample375",
        "sample376",
        "sample377",
        "sample378",
        "sample379",
        "sample380",
        "sample381",
        "sample382",
        "sample383",
        "sample384",
        "sample385",
        "sample386",
        "sample387",
        "sample388",
        "sample389",
        "sample390",
        "sample391",
        "sample392",
        "sample393",
        "sample394",
        "sample395",
        "sample396",
        "sample397",
        "sample398",
        "sample399",
        "sample400",
        "sample401",
        "sample402",
        "sample403",
        "sample404",
        "sample405",
        "sample406",
        "sample407",
        "sample408",
        "sample409",
        "sample410",
        "sample411",
        "sample412",
        "sample413",
        "sample414",
        "sample415",
        "sample416",
        "sample417",
        "sample418",
        "sample419",
        "sample420",
        "sample421",
        "sample422",
        "sample423",
        "sample424",
        "sample425",
        "sample426",
        "sample427",
        "sample428",
        "sample429",
        "sample430",
        "sample431",
        "sample432",
        "sample433",
        "sample434",
        "sample435",
        "sample436",
        "sample437",
        "sample438",
        "sample439",
        "sample440",
        "sample441",
        "sample442",
        "sample443",
        "sample444",
        "sample445",
        "sample446",
        "sample447",
        "sample448",
        "sample449",
        "sample450",
        "sample451",
        "sample452",
        "sample453",
        "sample454",
        "sample455",
        "sample456",
        "sample457",
        "sample458",
        "sample459",
        "sample460",
        "sample461",
        "sample462",
        "sample463",
        "sample464",
        "sample465",
        "sample466",
        "sample467",
        "sample468",
        "sample469",
        "sample470",
        "sample471",
        "sample472",
        "sample473",
        "sample474",
        "sample475",
        "sample476",
        "sample477",
        "sample478",
        "sample479",
        "sample480",
        "sample481",
        "sample482",
        "sample483",
        "sample484",
        "sample485",
        "sample486",
        "sample487",
        "sample488",
        "sample489",
        "sample490",
        "sample491",
        "sample492",
        "sample493",
        "sample494",
        "sample495",
        "sample496",
        "sample497",
        "sample498",
        "sample499",
        "sample500"
      ],
      "rows": 200,
      "table": true,
      "tojson": true
    },
    {
      "name": "clrCounts2",
      "title": "Simulated DV genes CLR-transformed count table",
      "object": "clrCounts2",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "control1",
        "control2",
        "control3",
        "control4",
        "control5",
        "control6",
        "control7",
        "control8",
        "control9",
        "control10",
        "control11",
        "control12",
        "control13",
        "control14",
        "control15",
        "control16",
        "control17",
        "control18",
        "control19",
        "control20",
        "control21",
        "control22",
        "control23",
        "control24",
        "control25",
        "control26",
        "control27",
        "control28",
        "control29",
        "control30",
        "control31",
        "control32",
        "control33",
        "control34",
        "control35",
        "control36",
        "control37",
        "control38",
        "control39",
        "control40",
        "control41",
        "control42",
        "control43",
        "control44",
        "control45",
        "control46",
        "control47",
        "control48",
        "control49",
        "control50",
        "control51",
        "control52",
        "control53",
        "control54",
        "control55",
        "control56",
        "control57",
        "control58",
        "control59",
        "control60",
        "control61",
        "control62",
        "control63",
        "control64",
        "control65",
        "control66",
        "control67",
        "control68",
        "control69",
        "control70",
        "control71",
        "control72",
        "control73",
        "control74",
        "control75",
        "control76",
        "control77",
        "control78",
        "control79",
        "control80",
        "control81",
        "control82",
        "control83",
        "control84",
        "control85",
        "control86",
        "control87",
        "control88",
        "control89",
        "control90",
        "control91",
        "control92",
        "control93",
        "control94",
        "control95",
        "control96",
        "control97",
        "control98",
        "control99",
        "control100",
        "control101",
        "control102",
        "control103",
        "control104",
        "control105",
        "control106",
        "control107",
        "control108",
        "control109",
        "control110",
        "control111",
        "control112",
        "control113",
        "control114",
        "control115",
        "control116",
        "control117",
        "control118",
        "control119",
        "control120",
        "control121",
        "control122",
        "control123",
        "control124",
        "control125",
        "control126",
        "control127",
        "control128",
        "control129",
        "control130",
        "control131",
        "control132",
        "control133",
        "control134",
        "control135",
        "control136",
        "control137",
        "control138",
        "control139",
        "control140",
        "control141",
        "control142",
        "control143",
        "control144",
        "control145",
        "control146",
        "control147",
        "control148",
        "control149",
        "control150",
        "control151",
        "control152",
        "control153",
        "control154",
        "control155",
        "control156",
        "control157",
        "control158",
        "control159",
        "control160",
        "control161",
        "control162",
        "control163",
        "control164",
        "control165",
        "control166",
        "control167",
        "control168",
        "control169",
        "control170",
        "control171",
        "control172",
        "control173",
        "control174",
        "control175",
        "control176",
        "control177",
        "control178",
        "control179",
        "control180",
        "control181",
        "control182",
        "control183",
        "control184",
        "control185",
        "control186",
        "control187",
        "control188",
        "control189",
        "control190",
        "control191",
        "control192",
        "control193",
        "control194",
        "control195",
        "control196",
        "control197",
        "control198",
        "control199",
        "control200",
        "case1",
        "case2",
        "case3",
        "case4",
        "case5",
        "case6",
        "case7",
        "case8",
        "case9",
        "case10",
        "case11",
        "case12",
        "case13",
        "case14",
        "case15",
        "case16",
        "case17",
        "case18",
        "case19",
        "case20",
        "case21",
        "case22",
        "case23",
        "case24",
        "case25",
        "case26",
        "case27",
        "case28",
        "case29",
        "case30",
        "case31",
        "case32",
        "case33",
        "case34",
        "case35",
        "case36",
        "case37",
        "case38",
        "case39",
        "case40",
        "case41",
        "case42",
        "case43",
        "case44",
        "case45",
        "case46",
        "case47",
        "case48",
        "case49",
        "case50",
        "case51",
        "case52",
        "case53",
        "case54",
        "case55",
        "case56",
        "case57",
        "case58",
        "case59",
        "case60",
        "case61",
        "case62",
        "case63",
        "case64",
        "case65",
        "case66",
        "case67",
        "case68",
        "case69",
        "case70",
        "case71",
        "case72",
        "case73",
        "case74",
        "case75",
        "case76",
        "case77",
        "case78",
        "case79",
        "case80",
        "case81",
        "case82",
        "case83",
        "case84",
        "case85",
        "case86",
        "case87",
        "case88",
        "case89",
        "case90",
        "case91",
        "case92",
        "case93",
        "case94",
        "case95",
        "case96",
        "case97",
        "case98",
        "case99",
        "case100",
        "case101",
        "case102",
        "case103",
        "case104",
        "case105",
        "case106",
        "case107",
        "case108",
        "case109",
        "case110",
        "case111",
        "case112",
        "case113",
        "case114",
        "case115",
        "case116",
        "case117",
        "case118",
        "case119",
        "case120",
        "case121",
        "case122",
        "case123",
        "case124",
        "case125",
        "case126",
        "case127",
        "case128",
        "case129",
        "case130",
        "case131",
        "case132",
        "case133",
        "case134",
        "case135",
        "case136",
        "case137",
        "case138",
        "case139",
        "case140",
        "case141",
        "case142",
        "case143",
        "case144",
        "case145",
        "case146",
        "case147",
        "case148",
        "case149",
        "case150",
        "case151",
        "case152",
        "case153",
        "case154",
        "case155",
        "case156",
        "case157",
        "case158",
        "case159",
        "case160",
        "case161",
        "case162",
        "case163",
        "case164",
        "case165",
        "case166",
        "case167",
        "case168",
        "case169",
        "case170",
        "case171",
        "case172",
        "case173",
        "case174",
        "case175",
        "case176",
        "case177",
        "case178",
        "case179",
        "case180",
        "case181",
        "case182",
        "case183",
        "case184",
        "case185",
        "case186",
        "case187",
        "case188",
        "case189",
        "case190",
        "case191",
        "case192",
        "case193",
        "case194",
        "case195",
        "case196",
        "case197",
        "case198",
        "case199",
        "case200"
      ],
      "rows": 500,
      "table": true,
      "tojson": true
    },
    {
      "name": "clrCounts3",
      "title": "Simulated DE genes CLR-transformed count table",
      "object": "clrCounts3",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "control1",
        "control2",
        "control3",
        "control4",
        "control5",
        "control6",
        "control7",
        "control8",
        "control9",
        "control10",
        "control11",
        "control12",
        "control13",
        "control14",
        "control15",
        "control16",
        "control17",
        "control18",
        "control19",
        "control20",
        "control21",
        "control22",
        "control23",
        "control24",
        "control25",
        "control26",
        "control27",
        "control28",
        "control29",
        "control30",
        "control31",
        "control32",
        "control33",
        "control34",
        "control35",
        "control36",
        "control37",
        "control38",
        "control39",
        "control40",
        "control41",
        "control42",
        "control43",
        "control44",
        "control45",
        "control46",
        "control47",
        "control48",
        "control49",
        "control50",
        "control51",
        "control52",
        "control53",
        "control54",
        "control55",
        "control56",
        "control57",
        "control58",
        "control59",
        "control60",
        "control61",
        "control62",
        "control63",
        "control64",
        "control65",
        "control66",
        "control67",
        "control68",
        "control69",
        "control70",
        "control71",
        "control72",
        "control73",
        "control74",
        "control75",
        "control76",
        "control77",
        "control78",
        "control79",
        "control80",
        "control81",
        "control82",
        "control83",
        "control84",
        "control85",
        "control86",
        "control87",
        "control88",
        "control89",
        "control90",
        "control91",
        "control92",
        "control93",
        "control94",
        "control95",
        "control96",
        "control97",
        "control98",
        "control99",
        "control100",
        "control101",
        "control102",
        "control103",
        "control104",
        "control105",
        "control106",
        "control107",
        "control108",
        "control109",
        "control110",
        "control111",
        "control112",
        "control113",
        "control114",
        "control115",
        "control116",
        "control117",
        "control118",
        "control119",
        "control120",
        "control121",
        "control122",
        "control123",
        "control124",
        "control125",
        "control126",
        "control127",
        "control128",
        "control129",
        "control130",
        "control131",
        "control132",
        "control133",
        "control134",
        "control135",
        "control136",
        "control137",
        "control138",
        "control139",
        "control140",
        "control141",
        "control142",
        "control143",
        "control144",
        "control145",
        "control146",
        "control147",
        "control148",
        "control149",
        "control150",
        "control151",
        "control152",
        "control153",
        "control154",
        "control155",
        "control156",
        "control157",
        "control158",
        "control159",
        "control160",
        "control161",
        "control162",
        "control163",
        "control164",
        "control165",
        "control166",
        "control167",
        "control168",
        "control169",
        "control170",
        "control171",
        "control172",
        "control173",
        "control174",
        "control175",
        "control176",
        "control177",
        "control178",
        "control179",
        "control180",
        "control181",
        "control182",
        "control183",
        "control184",
        "control185",
        "control186",
        "control187",
        "control188",
        "control189",
        "control190",
        "control191",
        "control192",
        "control193",
        "control194",
        "control195",
        "control196",
        "control197",
        "control198",
        "control199",
        "control200",
        "case1",
        "case2",
        "case3",
        "case4",
        "case5",
        "case6",
        "case7",
        "case8",
        "case9",
        "case10",
        "case11",
        "case12",
        "case13",
        "case14",
        "case15",
        "case16",
        "case17",
        "case18",
        "case19",
        "case20",
        "case21",
        "case22",
        "case23",
        "case24",
        "case25",
        "case26",
        "case27",
        "case28",
        "case29",
        "case30",
        "case31",
        "case32",
        "case33",
        "case34",
        "case35",
        "case36",
        "case37",
        "case38",
        "case39",
        "case40",
        "case41",
        "case42",
        "case43",
        "case44",
        "case45",
        "case46",
        "case47",
        "case48",
        "case49",
        "case50",
        "case51",
        "case52",
        "case53",
        "case54",
        "case55",
        "case56",
        "case57",
        "case58",
        "case59",
        "case60",
        "case61",
        "case62",
        "case63",
        "case64",
        "case65",
        "case66",
        "case67",
        "case68",
        "case69",
        "case70",
        "case71",
        "case72",
        "case73",
        "case74",
        "case75",
        "case76",
        "case77",
        "case78",
        "case79",
        "case80",
        "case81",
        "case82",
        "case83",
        "case84",
        "case85",
        "case86",
        "case87",
        "case88",
        "case89",
        "case90",
        "case91",
        "case92",
        "case93",
        "case94",
        "case95",
        "case96",
        "case97",
        "case98",
        "case99",
        "case100",
        "case101",
        "case102",
        "case103",
        "case104",
        "case105",
        "case106",
        "case107",
        "case108",
        "case109",
        "case110",
        "case111",
        "case112",
        "case113",
        "case114",
        "case115",
        "case116",
        "case117",
        "case118",
        "case119",
        "case120",
        "case121",
        "case122",
        "case123",
        "case124",
        "case125",
        "case126",
        "case127",
        "case128",
        "case129",
        "case130",
        "case131",
        "case132",
        "case133",
        "case134",
        "case135",
        "case136",
        "case137",
        "case138",
        "case139",
        "case140",
        "case141",
        "case142",
        "case143",
        "case144",
        "case145",
        "case146",
        "case147",
        "case148",
        "case149",
        "case150",
        "case151",
        "case152",
        "case153",
        "case154",
        "case155",
        "case156",
        "case157",
        "case158",
        "case159",
        "case160",
        "case161",
        "case162",
        "case163",
        "case164",
        "case165",
        "case166",
        "case167",
        "case168",
        "case169",
        "case170",
        "case171",
        "case172",
        "case173",
        "case174",
        "case175",
        "case176",
        "case177",
        "case178",
        "case179",
        "case180",
        "case181",
        "case182",
        "case183",
        "case184",
        "case185",
        "case186",
        "case187",
        "case188",
        "case189",
        "case190",
        "case191",
        "case192",
        "case193",
        "case194",
        "case195",
        "case196",
        "case197",
        "case198",
        "case199",
        "case200"
      ],
      "rows": 500,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "clr.SN.fit",
      "title": "Fit the skew-normal distribution to CLR-transformed RNA-Seq data",
      "topics": [
        "clr.SN.fit"
      ]
    },
    {
      "page": "clrCounts1",
      "title": "Simulated CLR-transformed count table",
      "topics": [
        "clrCounts1"
      ]
    },
    {
      "page": "clrCounts2",
      "title": "Simulated DV genes CLR-transformed count table",
      "topics": [
        "clrCounts2"
      ]
    },
    {
      "page": "clrCounts3",
      "title": "Simulated DE genes CLR-transformed count table",
      "topics": [
        "clrCounts3"
      ]
    },
    {
      "page": "clrDE",
      "title": "Differential Expression (DE) Test of CLR-transformed RNA-Seq Data",
      "topics": [
        "clrDE"
      ]
    },
    {
      "page": "clrDV",
      "title": "Differential variability (DV) test of CLR-transformed RNA-Seq data",
      "topics": [
        "clrDV"
      ]
    },
    {
      "page": "clrSeq",
      "title": "Fit the skew-normal model to CLR-transformed RNA-Seq data for 2 groups",
      "topics": [
        "clrSeq"
      ]
    },
    {
      "page": "clrSIEVE",
      "title": "Simultaneous Differential Expression, Variability and Skewness Analysis Using RNA-Seq Data",
      "topics": [
        "clrSIEVE"
      ]
    },
    {
      "page": "SN.plot",
      "title": "Distribution of CLR-transformed counts",
      "topics": [
        "SN.plot"
      ]
    },
    {
      "page": "violin.plot.SIEVE",
      "title": "Violin plots",
      "topics": [
        "violin.plot.SIEVE"
      ]
    }
  ],
  "_rundeps": [
    "cli",
    "cpp11",
    "farver",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "MASS",
    "Matrix",
    "MatrixModels",
    "mnormt",
    "numDeriv",
    "quantreg",
    "R6",
    "RColorBrewer",
    "rlang",
    "S7",
    "scales",
    "sn",
    "SparseM",
    "survival",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "SIEVEseq_Introduction.Rmd",
      "filename": "SIEVEseq_Introduction.html",
      "title": "SIEVEseq Introduction",
      "author": "Hongxiang Li and Tsung Fei Khang",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "Getting Started",
        "Differential Exprssion, Variability and Skewness Analyses",
        "Examples",
        "DE analysis",
        "DV analysis",
        "DS analysis",
        "Simultaneous DE, DV and DS analysis",
        "Notes on CLR-transfromation in SIEVEseq"
      ],
      "created": "2026-06-25 18:28:45",
      "modified": "2026-06-25 18:28:45",
      "commits": 1
    }
  ],
  "_score": 2,
  "_indexed": true,
  "_nocasepkg": "sieveseq",
  "_universes": [
    "cran",
    "divo-lee"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.0",
      "date": "2026-06-25T20:00:39.000Z",
      "distro": "resolute",
      "commit": "c610429b4510de96c06dafb247cbf88841564a92",
      "fileid": "895a123383cf7cc16df08d4a6265a7553351cf53bc4b12443264d0bfa06b3d24",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/28196603871"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.0",
      "date": "2026-06-25T20:00:32.000Z",
      "distro": "resolute",
      "commit": "c610429b4510de96c06dafb247cbf88841564a92",
      "fileid": "fcbb52b35e53911530f9ecafb0c08348e78dd657d859c7ddad513a5d361fdc06",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/28196603871"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.0",
      "date": "2026-06-25T20:00:36.000Z",
      "commit": "c610429b4510de96c06dafb247cbf88841564a92",
      "fileid": "d4758523622052f905378a80ff1eae8f2ef1330a89006abfd738e6a71f2f4a52",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/28196603871"
    }
  ]
}