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  "Package": "SATS",
  "Title": "Signature Analyzer for Targeted Sequencing",
  "Version": "1.0.10",
  "Date": "2026-07-02",
  "Authors@R": "c(person(given=\"DongHyuk\", family=\"Lee\", role=\"aut\", email=\"dhyuklee@pusan.ac.kr\"),\nperson(given=\"Bin\", family=\"Zhu\", role=\"aut\", email=\"bin.zhu@nih.gov\"),\nperson(given=\"Bill\", family=\"Wheeler\", role=\"cre\", email=\"wheelerb@imsweb.com\"))",
  "Description": "SATS stands for Signature Analyzer for Targeted Sequencing\nand performs mutational signature analysis for targeted\nsequenced tumors. Unlike the canonical analysis of mutational\nsignatures, SATS factorizes the mutation counts matrix into a\npanel context matrix (measuring the size of the targeted\nsequenced genome for each tumor in the unit of million base\npairs (Mb)), a signature profile matrix, and a signature\nactivity matrix. SATS also calculates the expected number of\nmutations attributed by a signature, namely signature burden,\nfor each targeted sequenced tumor. For more details see Lee et\nal. (2024) <doi:10.1101/2023.05.18.23290188>.",
  "License": "GPL-2",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-09 14:26:43 UTC",
    "User": "root"
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  "Author": "DongHyuk Lee [aut], Bin Zhu [aut], Bill Wheeler [cre]",
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  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-07-09 09:40:07 UTC",
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    {
      "page": "SATS-package",
      "title": "SATS (Signature Analyzer for Targeted Sequencing)",
      "topics": [
        "SATS"
      ]
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    {
      "page": "CalculateSigExpectancy",
      "title": "Calculate signature burdens",
      "topics": [
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    },
    {
      "page": "EstimateSigActivity",
      "title": "Estimate signature activity",
      "topics": [
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    },
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      "page": "GenerateLMatrix",
      "title": "Generate an L Matrix",
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      "page": "GeneratePanelSize",
      "title": "Generate Panel Size Matrix",
      "topics": [
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      ]
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      "title": "Find a subset of TMB-based catalog SBS signatures",
      "topics": [
        "MappingSignature"
      ]
    },
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      "title": "Example Data",
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