{
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  "Package": "PresenceAbsence",
  "Type": "Package",
  "Title": "Presence-Absence Model Evaluation",
  "Version": "1.1.11",
  "Date": "2023-01-05",
  "Author": "Elizabeth Freeman",
  "Maintainer": "Elizabeth Freeman <elizabeth.a.freeman@usda.gov>",
  "Description": "Provides a set of functions useful when evaluating the\nresults of presence-absence models. Package includes functions\nfor calculating threshold dependent measures such as confusion\nmatrices, pcc, sensitivity, specificity, and Kappa, and\nproduces plots of each measure as the threshold is varied. It\nwill calculate optimal threshold choice according to a choice\nof optimization criteria. It also includes functions to plot\nthe threshold independent ROC curves along with the associated\nAUC (area under the curve).",
  "License": "Unlimited",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-06 12:27:52 UTC",
    "User": "root"
  },
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2023-01-07 03:00:02 UTC",
  "RemoteUrl": "https://github.com/cran/PresenceAbsence",
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    "author": "Elizabeth Freeman <elizabeth.a.freeman@usda.gov>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.1.11\n",
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    "email": "elizabeth.a.freeman@usda.gov"
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  "_owner": "cran",
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  "_usedby": 9,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
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    "description": "Unofficial read-only mirror of all CRAN R packages"
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  "_rbuild": "4.6.1",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/PresenceAbsence.html"
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  "_realowner": "cran",
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  "_releases": [
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      "version": "1.0.0",
      "date": "2007-02-23"
    },
    {
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      "date": "2007-09-13"
    },
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      "date": "2022-03-02"
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    {
      "version": "1.1.11",
      "date": "2023-01-07"
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  "_exports": [
    "auc",
    "auc.roc.plot",
    "calibration.plot",
    "cmx",
    "error.threshold.plot",
    "Kappa",
    "optimal.thresholds",
    "pcc",
    "predicted.prevalence",
    "presence.absence.accuracy",
    "presence.absence.hist",
    "presence.absence.simulation",
    "presence.absence.summary",
    "roc.plot.calculate",
    "sensitivity",
    "specificity"
  ],
  "_datasets": [
    {
      "name": "SIM3DATA",
      "title": "Simulated Presence-Absence Data",
      "object": "SIM3DATA",
      "file": "SIM3DATA.txt.gz",
      "class": [
        "data.frame"
      ],
      "fields": [
        "plotID",
        "Observed",
        "Predicted1",
        "Predicted2",
        "Predicted3"
      ],
      "rows": 1000,
      "table": true,
      "tojson": true
    },
    {
      "name": "SPDATA",
      "title": "Species Presence/Absence Data",
      "object": "SPDATA",
      "file": "SPDATA.txt.gz",
      "class": [
        "data.frame"
      ],
      "fields": [
        "SPECIES",
        "OBSERVED",
        "GAM",
        "See5",
        "SGB"
      ],
      "rows": 5018,
      "table": true,
      "tojson": true
    },
    {
      "name": "SPPREV",
      "title": "Overall Preavalences for Species Presence/Absence Data",
      "object": "SPPREV",
      "file": "SPPREV.txt.gz",
      "class": [
        "data.frame"
      ],
      "fields": [
        "SPECIES",
        "NUMPLOTS",
        "PREV"
      ],
      "rows": 13,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "PresenceAbsence.package",
      "title": "Presence-Absence model evaluation",
      "topics": [
        "PresenceAbsence-package",
        "PresenceAbsence"
      ]
    },
    {
      "page": "auc",
      "title": "Area Under the Curve",
      "topics": [
        "auc"
      ]
    },
    {
      "page": "auc.roc.plot",
      "title": "AUC ROC Plot",
      "topics": [
        "auc.roc.plot"
      ]
    },
    {
      "page": "calibration.plot",
      "title": "Calibration Plot",
      "topics": [
        "calibration.plot"
      ]
    },
    {
      "page": "cmx",
      "title": "Confusion Matrix",
      "topics": [
        "cmx"
      ]
    },
    {
      "page": "error.threshold.plot",
      "title": "Error Threshold Plot",
      "topics": [
        "error.threshold.plot"
      ]
    },
    {
      "page": "Kappa",
      "title": "Kappa",
      "topics": [
        "Kappa"
      ]
    },
    {
      "page": "optimal.thresholds",
      "title": "Calculate Optimal Thresholds",
      "topics": [
        "optimal.thresholds"
      ]
    },
    {
      "page": "pcc",
      "title": "Percent Correctly Classified",
      "topics": [
        "pcc"
      ]
    },
    {
      "page": "predicted.prevalence",
      "title": "Predicted Prevalence",
      "topics": [
        "predicted.prevalence"
      ]
    },
    {
      "page": "presence.absence.accuracy",
      "title": "Accuracy Table for Presence/Absence Data",
      "topics": [
        "presence.absence.accuracy"
      ]
    },
    {
      "page": "presence.absence.hist",
      "title": "Presence/Absence Histogram",
      "topics": [
        "presence.absence.hist"
      ]
    },
    {
      "page": "presence.absence.simulation",
      "title": "Presence/Absence Data Simulation",
      "topics": [
        "presence.absence.simulation"
      ]
    },
    {
      "page": "presence.absence.summary",
      "title": "Presence/Absence Summary Plots",
      "topics": [
        "presence.absence.summary"
      ]
    },
    {
      "page": "roc.plot.calculate",
      "title": "ROC Plot Calculations",
      "topics": [
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      ]
    },
    {
      "page": "sensitivity",
      "title": "Sensitivity",
      "topics": [
        "sensitivity"
      ]
    },
    {
      "page": "SIM3DATA",
      "title": "Simulated Presence-Absence Data",
      "topics": [
        "SIM3DATA"
      ]
    },
    {
      "page": "SPDATA",
      "title": "Species Presence/Absence Data",
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        "SPDATA"
      ]
    },
    {
      "page": "specificity",
      "title": "Specificity",
      "topics": [
        "specificity"
      ]
    },
    {
      "page": "SPPREV",
      "title": "Overall Preavalences for Species Presence/Absence Data",
      "topics": [
        "SPPREV"
      ]
    }
  ],
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