{ "_id": "6a2916ac732311cd87599bc9", "Package": "PVAClone", "Type": "Package", "Title": "Population Viability Analysis with Data Cloning", "Version": "0.1-8", "Date": "2025-07-12", "Authors@R": "c(person(given = \"Khurram\",\nfamily = \"Nadeem\",\nrole = \"aut\"),\nperson(given = \"Peter\",\nfamily = \"Solymos\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-7337-1740\"),\nemail = \"psolymos@gmail.com\"))", "Maintainer": "Peter Solymos ", "Description": "Likelihood based population viability analysis in the\npresence of observation error and missing data. The package can\nbe used to fit, compare, predict, and forecast various growth\nmodel types using data cloning.", "License": "GPL-2", "SystemRequirements": "JAGS (>= 3.0.0)", "URL": "https://github.com/psolymos/PVAClone", "BugReports": "https://github.com/psolymos/PVAClone/issues", "LazyLoad": "yes", "LazyData": "true", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-10 07:43:03 UTC", "User": "root" }, "Author": "Khurram Nadeem [aut], Peter Solymos [aut, cre] (ORCID:\n)", "Config/pak/sysreqs": "jags", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2025-07-13 23:34:54 UTC", "RemoteUrl": "https://github.com/cran/PVAClone", "RemoteRef": "HEAD", "RemoteSha": "ee5e3abf59cd898801c79732ed3472e7ddbe94e3", "MD5sum": "bb0bdf144f41cce3cc02da2b4a84b3ab", "_user": "cran", "_type": "src", "_file": "PVAClone_0.1-8.tar.gz", "_fileid": "8efbacd215e290eb37a7e1f8cb2f6af06c0e2480fa9796d20413d6422c098fb4", "_filesize": 227460, "_sha256": "8efbacd215e290eb37a7e1f8cb2f6af06c0e2480fa9796d20413d6422c098fb4", "_created": "2026-06-10T07:43:03.000Z", "_published": "2026-06-10T07:47:56.080Z", "_distro": "noble", "_jobs": [ { "job": 80507035154, "time": 244, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7529558625" }, { "job": 80507035141, "time": 216, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7529549247" }, { "job": 80506309915, "time": 262, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7529473330" }, { "job": 80507035150, "time": 136, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7529521541" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/27260943789", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/PVAClone", "_commit": { "id": "ee5e3abf59cd898801c79732ed3472e7ddbe94e3", "author": "Peter Solymos ", "committer": "cran-robot ", "message": "version 0.1-8\n", "time": 1752449694 }, "_maintainer": { "name": "Peter Solymos", "email": "psolymos@gmail.com", "login": "psolymos", "linkedin": "in/peter-solymos", "twitter": "@psolymos", "description": "Tech-bio-nerd", "uuid": 831636, "orcid": "0000-0001-7337-1740" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.15.0", "role": "Depends" }, { "package": "dcmle", "version": ">= 0.3-0", "role": "Depends" }, { "package": "dclone", "role": "Depends" }, { "package": "stats4", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "coda", "role": "Imports" }, { "package": "parallel", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-28", "n": 1 } ], "_tags": [ { "name": "0.1-8", "date": "2025-07-13" } ], "_stars": 0, "_contributors": [ { "user": "psolymos", "count": 8, "uuid": 831636 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 194, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PVAClone" }, "_devurl": "https://github.com/psolymos/pvaclone", "_searchresults": 21, "_topics": [ "jags", "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/PVAClone.html", "manual.pdf" ], "_homeurl": "https://github.com/psolymos/pvaclone", "_realowner": "psolymos", "_cranurl": false, "_releases": [ { "version": "0.1-0", "date": "2012-07-27" }, { "version": "0.1-1", "date": "2012-08-25" }, { "version": "0.1-2", "date": "2014-05-19" }, { "version": "0.1-4", "date": "2016-01-14" }, { "version": "0.1-5", "date": "2016-02-05" }, { "version": "0.1-6", "date": "2016-03-12" }, { "version": "0.1-7", "date": "2024-01-23" }, { "version": "0.1-8", "date": "2025-07-13" } ], "_exports": [ "bevertonholt", "coef", "confint", "diagn_scale", "fancyPVAmodel", "generateLatent", "gompertz", "model.select", "print.pvaModelSelect", "pva", "pva.llr", "ricker", "summary", "thetalogistic", "thetalogistic_D", "ts_index", "vcov" ], "_datasets": [ { "name": "paurelia", "title": "Paramecium abundance time series", "object": "paurelia", "class": [ "numeric" ], "fields": [], "table": false, "tojson": true }, { "name": "redstart", "title": "Abundance time series of American Redstart", "object": "redstart", "class": [ "numeric" ], "fields": [], "table": false, "tojson": true }, { "name": "songsparrow", "title": "Abundance time series of Song Sparrow", "object": "songsparrow", "class": [ "numeric" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "PVAClone-package", "title": "Population Viability Analysis with Data Cloning", "topics": [ "PVAClone-package", "PVA", "Pva", "PVAClone", "pvaclone" ] }, { "page": "fancyPVAmodel", "title": "Print fancy model names in summaries", "topics": [ "fancyPVAmodel" ] }, { "page": "generateLatent", "title": "Generate latent variable", "topics": [ "generateLatent" ] }, { "page": "growthmodels", "title": "Growth models", "topics": [ "bevertonholt", "gompertz", "growthmodels", "ricker", "thetalogistic", "thetalogistic_D" ] }, { "page": "internals", "title": "Internal functions", "topics": [ "internal-functions", "Internals", "internals", "PVAClone-internals", "ts_index" ] }, { "page": "model.select", "title": "Model selection for 'pva' objects", "topics": [ "model.select", "print.pvaModelSelect", "pva.llr" ] }, { "page": "paurelia", "title": "Paramecium abundance time series", "topics": [ "paurelia" ] }, { "page": "pva", "title": "Population Viability Analysis", "topics": [ "diagn_scale", "pva" ] }, { "page": "pva-class", "title": "Class '\"pva\"'", "topics": [ "pva-class" ] }, { "page": "pva-methods", "title": "Methods for 'pva' objects", "topics": [ "coef,pva-method", "confint,pva-method", "summary,pva-method", "vcov,pva-method" ] }, { "page": "pvamodel-class", "title": "Class '\"pvamodel\"'", "topics": [ "pvamodel-class" ] }, { "page": "redstart", "title": "Abundance time series of American Redstart", "topics": [ "redstart" ] }, { "page": "songsparrow", "title": "Abundance time series of Song Sparrow", "topics": [ "songsparrow" ] } ], "_rundeps": [ "abind", "backports", "BH", "boot", "callr", "checkmate", "cli", "coda", "cpp11", "dclone", "dcmle", "desc", "distributional", "farver", "generics", "ggplot2", "glue", "gridExtra", "gtable", "inline", "isoband", "labeling", "lattice", "lifecycle", "loo", "magrittr", "Matrix", "matrixStats", "numDeriv", "otel", "pillar", "pkgbuild", "pkgconfig", "posterior", "processx", "ps", "QuickJSR", "R2OpenBUGS", "R6", "RColorBrewer", "Rcpp", "RcppEigen", "RcppParallel", "rjags", "rlang", "rstan", "S7", "scales", "StanHeaders", "tensorA", "tibble", "utf8", "vctrs", "viridisLite", "withr" ], "_sysdeps": [ { "shlib": "libjags", "package": "jags", "headers": "jags", "source": "jags", "version": "4.3.2-2.2404.0", "name": "jags", "homepage": "https://mcmc-jags.sourceforge.io", "description": "Just Another Gibbs Sampler for Bayesian MCMC - binary" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 1.3222192947339193, "_indexed": false, "_nocasepkg": "pvaclone", "_universes": [ "cran" ], "_indexurl": "https://psolymos.r-universe.dev/PVAClone", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1-8", "date": "2026-06-10T07:45:59.000Z", "distro": "noble", "commit": "ee5e3abf59cd898801c79732ed3472e7ddbe94e3", "fileid": "730fb5da58141aff33969eb72603738565f359ce8d7df1248c609338a80640c8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27260943789" }, { "r": "4.6.0", "os": "linux", "version": "0.1-8", "date": "2026-06-10T07:45:43.000Z", "distro": "noble", "commit": "ee5e3abf59cd898801c79732ed3472e7ddbe94e3", "fileid": "5a10f1c59bd508b1c5f4d2423877c56d1ab767bb8701e353a248c81de4d08a7a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27260943789" }, { "r": "4.6.0", "os": "wasm", "version": "0.1-8", "date": "2026-06-10T07:45:48.000Z", "commit": "ee5e3abf59cd898801c79732ed3472e7ddbe94e3", "fileid": "cbdeef4ef47721f83b6baae941fe8779c85dde3ce2ce1868747adc910f2c0b53", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/27260943789" } ] }