{
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  "Package": "PHSMM",
  "Type": "Package",
  "Title": "Penalised Maximum Likelihood Estimation for Hidden Semi-Markov\nModels",
  "Version": "1.0",
  "Date": "2021-01-28",
  "Author": "Jennifer Pohle",
  "Maintainer": "Jennifer Pohle <jennifer.pohle@uni-bielefeld.de>",
  "Description": "Provides tools for penalised maximum likelihood estimation\nof hidden semi-Markov models (HSMMs) with flexible state\ndwell-time distributions. These include functions for model\nfitting, model checking and state-decoding. The package\nconsiders HSMMs for univariate time series with state-dependent\ngamma, normal, Poisson or Bernoulli distributions. For details,\nsee Pohle, J., Adam, T. and Beumer, L.T. (2021): Flexible\nestimation of the state dwell-time distribution in hidden\nsemi-Markov models. <arXiv:2101.09197>.",
  "License": "GPL-3",
  "LazyData": "true",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-02 07:11:00 UTC",
    "User": "root"
  },
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2021-02-09 09:10:02 UTC",
  "RemoteUrl": "https://github.com/cran/PHSMM",
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  "_user": "cran",
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    "author": "Jennifer Pohle <jennifer.pohle@uni-bielefeld.de>",
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    "message": "version 1.0\n",
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    "name": "Jennifer Pohle",
    "email": "jennifer.pohle@uni-bielefeld.de"
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      "role": "LinkingTo"
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  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_userbio": {
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    "name": "cran",
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PHSMM"
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  "_searchresults": 5,
  "_topics": [
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  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
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  "_cranurl": false,
  "_releases": [
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  "_exports": [
    "dbern",
    "decodeHSMM",
    "n2wHSMM",
    "nll_Rcpp",
    "npllHSMM",
    "pbern",
    "plotDw",
    "pmleHSMM",
    "pseudoResHSMM",
    "tpmHMM",
    "w2nHSMM"
  ],
  "_datasets": [
    {
      "name": "muskox",
      "title": "Muskox movement data",
      "object": "muskox",
      "class": [
        "data.frame"
      ],
      "fields": [
        "date",
        "tday",
        "x",
        "y",
        "step"
      ],
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      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "bern",
      "title": "Bernoulli distribution",
      "topics": [
        "dbern",
        "pbern"
      ]
    },
    {
      "page": "decodeHSMM",
      "title": "State decoding",
      "topics": [
        "decodeHSMM"
      ]
    },
    {
      "page": "muskox",
      "title": "Muskox movement data",
      "topics": [
        "muskox"
      ]
    },
    {
      "page": "n2wHSMM",
      "title": "Parameter transformation from natural to working parameters",
      "topics": [
        "n2wHSMM"
      ]
    },
    {
      "page": "nll_Rcpp",
      "title": "Negative log-likelihood evaluation",
      "topics": [
        "nll_Rcpp"
      ]
    },
    {
      "page": "npllHSMM",
      "title": "negative penalised HSMM log-likelihood function",
      "topics": [
        "npllHSMM"
      ]
    },
    {
      "page": "plotDw",
      "title": "Plot of the estimated HSMM dwell-time distributions.",
      "topics": [
        "plotDw"
      ]
    },
    {
      "page": "pmleHSMM",
      "title": "HSMM penalised maximum likelihood estimation",
      "topics": [
        "pmleHSMM"
      ]
    },
    {
      "page": "pseudoResHSMM",
      "title": "HSMM pseudo-residuals",
      "topics": [
        "pseudoResHSMM"
      ]
    },
    {
      "page": "tpmHMM",
      "title": "Tranistion probability matrix of the HMM representation",
      "topics": [
        "tpmHMM"
      ]
    },
    {
      "page": "w2nHSMM",
      "title": "Parameter transformation from working to natural parameters",
      "topics": [
        "w2nHSMM"
      ]
    }
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