{ "_id": "6a16a938acfb0bcc41d838fe", "Package": "PANPRSnext", "Type": "Package", "Title": "Building PRS Models Based on Summary Statistics of GWAs", "Version": "1.2.1", "Authors@R": "c(person(\"Katherine\", \"Luo\", email = \"hluo224@uwo.ca\", role = c(\"aut\", \"cre\")), person(\"Osvaldo\", \"Espin-Garcia\", email = \"oespinga@uwo.ca\", role = c(\"aut\")), person(\"Ting-Huei\", \"Chen\", email = \"ting-huei.chen@mat.ulaval.ca\", role = c(\"aut\")))", "Description": "Shrinkage estimator for polygenic risk prediction (PRS)\nmodels based on summary statistics of genome-wide association\n(GWA) studies. Based upon the methods and original 'PANPRS'\npackage as found in: Chen, Chatterjee, Landi, and Shi (2020)\n.", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.2.3", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-27 08:15:42 UTC", "User": "root" }, "Author": "Katherine Luo [aut, cre], Osvaldo Espin-Garcia [aut], Ting-Huei\nChen [aut]", "Maintainer": "Katherine Luo ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2025-07-22 10:20:22 UTC", "RemoteUrl": "https://github.com/cran/PANPRSnext", "RemoteRef": "HEAD", "RemoteSha": "8dcfc0b0d90b885800cf06aa93bc3e5a8f93a8f7", "MD5sum": "54c28be28dc7e36928bece54685686ae", "_user": "cran", "_type": "src", "_file": "PANPRSnext_1.2.1.tar.gz", "_fileid": "b4ec093c2b074be1df844a873463ecfe6f1f9e410383e1e883468d65b5a50fa1", "_filesize": 1258817, "_sha256": "b4ec093c2b074be1df844a873463ecfe6f1f9e410383e1e883468d65b5a50fa1", "_created": "2026-05-27T08:15:42.000Z", "_published": "2026-05-27T08:20:08.082Z", "_distro": "noble", "_jobs": [ { "job": 78035852535, "time": 175, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7235390285" }, { "job": 78035852550, "time": 134, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7235376476" }, { "job": 78035852534, "time": 139, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7235377858" }, { "job": 78035852549, "time": 198, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7235396958" }, { "job": 78035348100, "time": 187, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7235328328" }, { "job": 78035852519, "time": 156, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7235382545" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/26499302391", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/PANPRSnext", "_commit": { "id": "8dcfc0b0d90b885800cf06aa93bc3e5a8f93a8f7", "author": "Katherine Luo ", "committer": "cran-robot ", "message": "version 1.2.1\n", "time": 1753179622 }, "_maintainer": { "name": "Katherine Luo", "email": "hluo224@uwo.ca" }, "_registered": true, "_dependencies": [ { "package": "gtools", "role": "Depends" }, { "package": "R", "version": ">= 3.1.0", "role": "Depends" }, { "package": "Rcpp", "version": ">= 1.0.14", "role": "LinkingTo" }, { "package": "RcppArmadillo", "version": ">= 14.4.3-1", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 1.0.14", "role": "Imports" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-30", "n": 1 } ], "_tags": [ { "name": "1.2.1", "date": "2025-07-22" } ], "_stars": 1, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 143, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PANPRSnext" }, "_searchresults": 6, "_topics": [ "cpp", "openmp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/PANPRSnext.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "1.2.0", "date": "2023-11-17" }, { "version": "1.2.1", "date": "2025-07-22" } ], "_exports": [ "gsfPEN_R", "gsPEN_R", "test_gsfPEN", "test_gsPEN" ], "_datasets": [ { "name": "funcIndex", "title": "Inputs for the functional annotations of SNPs.", "object": "funcIndex", "class": [ "data.frame" ], "fields": [ "V1", "V2", "V3" ], "rows": 3614, "table": true, "tojson": true }, { "name": "Nvec", "title": "A vector of sample sizes for the q traits of the 'summaryZ'.", "object": "Nvec", "class": [ "numeric" ], "fields": [], "table": false, "tojson": true }, { "name": "plinkLD", "title": "The LD info from output of the software (plink)", "object": "plinkLD", "class": [ "data.frame" ], "fields": [ "CHR_A", "BP_A", "SNP_A", "CHR_B", "BP_B", "SNP_B", "R" ], "rows": 205959, "table": true, "tojson": true }, { "name": "summaryZ", "title": "The Z statistics from the univariate analysis of the association between 3614 SNPs and three traits respectively.", "object": "summaryZ", "class": [ "data.frame" ], "fields": [ "Zobs1", "Zobs2", "Zobs3" ], "rows": 3614, "table": true, "tojson": true } ], "_help": [ { "page": "funcIndex", "title": "Inputs for the functional annotations of SNPs.", "topics": [ "funcIndex" ] }, { "page": "gsfPEN_cpp", "title": "Main CPP function", "topics": [ "gsfPEN_cpp" ] }, { "page": "gsfPEN_R", "title": "Run the gsfPEN algorithm for multiple traits, with functional annotations.", "topics": [ "gsfPEN_R" ] }, { "page": "gsfPEN_sparse_cpp", "title": "Main CPP function", "topics": [ "gsfPEN_sparse_cpp" ] }, { "page": "gsPEN_cpp", "title": "Main CPP function", "topics": [ "gsPEN_cpp" ] }, { "page": "gsPEN_R", "title": "Run the gsPEN algorithm for multiple traits, without functional annotations.", "topics": [ "gsPEN_R" ] }, { "page": "gsPEN_sparse_cpp", "title": "Main CPP function", "topics": [ "gsPEN_sparse_cpp" ] }, { "page": "Nvec", "title": "A vector of sample sizes for the q traits of the 'summaryZ'.", "topics": [ "Nvec" ] }, { "page": "plinkLD", "title": "The LD info from output of the software (plink)", "topics": [ "plinkLD" ] }, { "page": "summaryZ", "title": "The Z statistics from the univariate analysis of the association between 3614 SNPs and three traits respectively.", "topics": [ "summaryZ" ] }, { "page": "test_gsfPEN", "title": "Run gsfPEN on a small sample of the provided data set (Only 100 samples)", "topics": [ "test_gsfPEN" ] }, { "page": "test_gsPEN", "title": "Run gsPEN on a small sample of the provided data set (Only 100 samples)", "topics": [ "test_gsPEN" ] } ], "_readme": "https://github.com/cran/PANPRSnext/raw/HEAD/README.md", "_rundeps": [ "gtools", "Rcpp", "RcppArmadillo" ], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_score": 1.6989700043360187, "_indexed": true, "_nocasepkg": "panprsnext", "_universes": [ "cran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.2.1", "date": "2026-05-27T08:18:50.000Z", "distro": "noble", "arch": "aarch64", "commit": "8dcfc0b0d90b885800cf06aa93bc3e5a8f93a8f7", "fileid": "a911ebc318b824738b153d9df5d63a52a722a228f2bc23a6403b21410ac597ab", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26499302391" }, { "r": "4.7.0", "os": "linux", "version": "1.2.1", "date": "2026-05-27T08:18:10.000Z", "distro": "noble", "arch": "x86_64", "commit": "8dcfc0b0d90b885800cf06aa93bc3e5a8f93a8f7", "fileid": "8b8bb0adbcefd74e7603fc6aeee0ec4d0c97c2b0a83caa750b0930c282150def", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26499302391" }, { "r": "4.6.0", "os": "linux", "version": "1.2.1", "date": "2026-05-27T08:18:15.000Z", "distro": "noble", "arch": "aarch64", "commit": "8dcfc0b0d90b885800cf06aa93bc3e5a8f93a8f7", "fileid": "13ccc8cebd1137d1779e7220f49d446af40a31cf4dffe1d796e82dc758742e77", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26499302391" }, { "r": "4.6.0", "os": "linux", "version": "1.2.1", "date": "2026-05-27T08:19:13.000Z", "distro": "noble", "arch": "x86_64", "commit": "8dcfc0b0d90b885800cf06aa93bc3e5a8f93a8f7", "fileid": "b5f55c0c709103f68e800a16bf0d32ce78509e85f80f637c149cc0b16aea1ab9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26499302391" }, { "r": "4.6.0", "os": "wasm", "version": "1.2.1", "date": "2026-05-27T08:18:44.000Z", "arch": "emscripten", "commit": "8dcfc0b0d90b885800cf06aa93bc3e5a8f93a8f7", "fileid": "0da2115542517841da7e9ef0c071d0165547bc55452db4ca67c6c093f7ce871b", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/26499302391" } ] }