{ "_id": "6a572861ff0138dec5d6e76f", "Package": "MultiPhen", "Type": "Package", "Title": "A Package to Test for Multi-Trait Association", "Version": "2.0.4", "Date": "2026-03-17", "Author": "Lachlan Coin [aut, cre], Paul O'Reilly [aut], Yotsawat Pompyen\n[aut], Clive Hoggart [aut], Federico Calboli [aut]", "Authors@R": "c(person(given = \"Lachlan\",\nfamily = \"Coin\",\nrole = c(\"aut\", \"cre\"),\nemail = \"l.coin@imb.uq.edu.au\"),\nperson(given = \"Paul\",\nfamily = \"O'Reilly\",\nrole = \"aut\"),\nperson(given = \"Yotsawat\",\nfamily = \"Pompyen\",\nrole = \"aut\"),\nperson(given = \"Clive\",\nfamily = \"Hoggart\",\nrole = \"aut\"),\nperson(given = \"Federico\",\nfamily = \"Calboli\",\nrole = \"aut\"))", "Maintainer": "Lachlan Coin ", "Description": "Performs genetic association tests between SNPs\n(one-at-a-time) and multiple phenotypes (separately or in joint\nmodel).", "License": "GPL-2", "LazyLoad": "yes", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-15 06:24:02 UTC", "User": "root" }, "RoxygenNote": "7.3.3", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2026-03-17 07:34:26 UTC", "RemoteUrl": "https://github.com/cran/MultiPhen", "RemoteRef": "HEAD", "RemoteSha": "2acf5f436b9ea717752025628a81198272b40394", "_user": "cran", "_type": "src", "_file": "MultiPhen_2.0.4.tar.gz", "_fileid": "https://r2.ropensci.org/8398cb4e4eb3a3836f30dbec7a763cf76438fb3a60c43b574f1c86fb88bd4a9b", "_filesize": 213295, "_sha256": "8398cb4e4eb3a3836f30dbec7a763cf76438fb3a60c43b574f1c86fb88bd4a9b", "_expires": "2026-10-23T06:27:43.000Z", "_created": "2026-07-15T06:24:02.000Z", "_published": "2026-07-15T06:27:45.340Z", "_jobs": [ { "job": 87283642428, "time": 172, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8334434015" }, { "job": 87283642472, "time": 159, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8334429937" }, { "job": 87283134535, "time": 208, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8334381213" }, { "job": 87283642425, "time": 122, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8334418594" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/cran/actions/runs/29393924250", "_status": "success", "_upstream": "https://github.com/cran/MultiPhen", "_commit": { "id": "2acf5f436b9ea717752025628a81198272b40394", "author": "Lachlan Coin ", "committer": "cran-robot ", "message": "version 2.0.4\n", "time": 1773732866 }, "_maintainer": { "name": "Lachlan Coin", "email": "l.coin@imb.uq.edu.au" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "MASS", "role": "Depends" }, { "package": "abind", "role": "Depends" }, { "package": "epitools", "role": "Depends" }, { "package": "RColorBrewer", "role": "Imports" }, { "package": "meta", "role": "Imports" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2026-12", "n": 1 } ], "_tags": [ { "name": "2.0.4", "date": "2026-03-17" } ], "_stars": 0, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "followers": 620, "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 463, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MultiPhen" }, "_mentions": 29, "_searchresults": 18, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/MultiPhen.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "0.1", "date": "2011-07-06" }, { "version": "0.2", "date": "2011-07-23" }, { "version": "0.3", "date": "2012-02-29" }, { "version": "0.4", "date": "2012-03-28" }, { "version": "0.5", "date": "2012-04-30" }, { "version": "0.6", "date": "2012-06-08" }, { "version": "0.7", "date": "2012-06-26" }, { "version": "0.8", "date": "2012-06-29" }, { "version": "0.9", "date": "2012-08-24" }, { "version": "0.9.1", "date": "2012-08-28" }, { "version": "1.0.0", "date": "2013-03-20" }, { "version": "2.0.0", "date": "2014-01-08" }, { "version": "2.0.1", "date": "2015-07-06" }, { "version": "2.0.2", "date": "2017-05-16" }, { "version": "2.0.3", "date": "2020-02-09" }, { "version": "2.0.4", "date": "2026-03-17" } ], "_exports": [ "mPhen", "mPhen.assoc", "mPhen.cca", "mPhen.defineOptions", "mPhen.options", "mPhen.plotCorrelation", "mPhen.preparePheno", "mPhen.readGenotypes", "mPhen.readPhenoFiles", "mPhen.sampleCovar", "mPhen.sampleGeno", "mPhen.simulate", "mPhen.writeOutput", "read.plink" ], "_datasets": [ { "name": "pheno", "title": "A dummy phenotype dataset that provides an example of the input phenotype data used by the package", "object": "pheno", "file": "pheno.rda", "class": [ "matrix", "array" ], "fields": [ "testPheno1", "testPheno2", "testPheno3", "testPheno4", "testPheno5" ], "rows": 150, "table": true, "tojson": true }, { "name": "snps", "title": "A dummy snp dataset that provides an example of the input snp data used by the package", "object": "snps", "file": "snps.imputed.rda", "class": [ "matrix", "array" ], "fields": [ "1_1", "1_2", "1_3" ], "rows": 150, "table": true, "tojson": true }, { "name": "snps.imputed", "title": "Imputed SNP dataset", "object": "snps.imputed", "file": "snps.imputed.rda", "class": [ "array" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "MultiPhen-package", "title": "MultiPhen, a package for the genetic association testing of multiple phenotypes", "topics": [ "MultiPhen-package", "MultiPhen" ] }, { "page": "mPhen", "title": "A function for the genetic association testing of multiple phenotypes", "topics": [ "mPhen" ] }, { "page": "mPhen.assoc", "title": "A function for the genetic association testing of multiple phenotypes", "topics": [ "mPhen.assoc" ] }, { "page": "mPhen.cca", "title": "Sparse canonical correlation analysis", "topics": [ "mPhen.cca" ] }, { "page": "mPhen.defineOptions", "title": "Defines and modifies options.", "topics": [ "mPhen.defineOptions" ] }, { "page": "mPhen.options", "title": "Retrieves default mPhen options, and descriptions.", "topics": [ "mPhen.options" ] }, { "page": "mPhen.plotCorrelation", "title": "Plots correlation between phenotype values conditional on genotype", "topics": [ "mPhen.plotCorrelation" ] }, { "page": "mPhen.preparePheno", "title": "Prepare phenotype data for analysis", "topics": [ "mPhen.preparePheno" ] }, { "page": "mPhen.readGenotypes", "title": "Open, and read from a read connection to a genotype file", "topics": [ "mPhen.readGenotypes" ] }, { "page": "mPhen.readPhenoFiles", "title": "Read and merge phenotype files", "topics": [ "mPhen.readPhenoFiles" ] }, { "page": "mPhen.sampleCovar", "title": "Generates a covariance matrix.", "topics": [ "mPhen.sampleCovar" ] }, { "page": "mPhen.sampleGeno", "title": "Sample genotypes", "topics": [ "mPhen.sampleGeno" ] }, { "page": "mPhen.simulate", "title": "Simulates phenotypes according to a correlation structure.", "topics": [ "mPhen.simulate" ] }, { "page": "mPhen.writeOutput", "title": "Prepares output files and plots from MultiPhen results", "topics": [ "mPhen.writeOutput" ] }, { "page": "pheno", "title": "A dummy phenotype dataset that provides an example of the input phenotype data used by the package", "topics": [ "pheno" ] }, { "page": "read.plink", "title": "A function to read (small) binary PLINK binary files in a R session", "topics": [ "read.plink" ] }, { "page": "snps", "title": "A dummy snp dataset that provides an example of the input snp data used by the package", "topics": [ "snps" ] }, { "page": "snps.imputed", "title": "Imputed SNP dataset", "topics": [ "snps.imputed" ] } ], "_readme": "https://github.com/cran/MultiPhen/raw/HEAD/README.md", "_rundeps": [ "abind", "bit", "bit64", "boot", "cli", "clipr", "CompQuadForm", "cpp11", "crayon", "digest", "dplyr", "epitools", "farver", "generics", "ggplot2", "glue", "gtable", "hms", "isoband", "labeling", "lattice", "lifecycle", "lme4", "magrittr", "MASS", "mathjaxr", "Matrix", "meta", "metabook", "metadat", "metafor", "minqa", "nlme", "nloptr", "numDeriv", "pbapply", "pillar", "pkgconfig", "prettyunits", "progress", "purrr", "R6", "rbibutils", "RColorBrewer", "Rcpp", "RcppEigen", "Rdpack", "readr", "reformulas", "rlang", "S7", "scales", "stringi", "stringr", "tibble", "tidyselect", "tzdb", "utf8", "vctrs", "viridisLite", "vroom", "withr", "xml2" ], "_score": 2.9542425094393248, "_indexed": true, "_nocasepkg": "multiphen", "_universes": [ "cran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.0.4", "date": "2026-07-15T06:26:24.000Z", "distro": "resolute", "commit": "2acf5f436b9ea717752025628a81198272b40394", "fileid": "https://r2.ropensci.org/cd1752209283a8035ee46e3b6bb26dc7881a85abce753e1084a53041d8f5f179", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/29393924250" }, { "r": "4.6.1", "os": "linux", "version": "2.0.4", "date": "2026-07-15T06:26:12.000Z", "distro": "resolute", "commit": "2acf5f436b9ea717752025628a81198272b40394", "fileid": "https://r2.ropensci.org/f78292ba7d845848fa0e2b6422c3727d7cb0fe248208a128e08fa8e19ac2c462", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/29393924250" }, { "r": "4.6.0", "os": "wasm", "version": "2.0.4", "date": "2026-07-15T06:26:27.000Z", "commit": "2acf5f436b9ea717752025628a81198272b40394", "fileid": "https://r2.ropensci.org/391a6cf5f4a1902b99480a98faf97cd04c0e7a80f0a0e68f7dfb15ea5d477958", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/29393924250" } ] }