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"Target_All_Fish", "class": [ "Fleet" ], "fields": [], "table": false, "tojson": false }, { "name": "Targeting_Small_Fish", "title": "Fleet class objects", "object": "Targeting_Small_Fish", "class": [ "Fleet" ], "fields": [], "table": false, "tojson": false }, { "name": "Taxa_Table", "title": "Taxa_Table", "object": "Taxa_Table", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "SpecCode", "Species", "Genus", "Subfamily", "Family", "Order", "Class", "SuperClass" ], "rows": 34721, "table": true, "tojson": true }, { "name": "testOM", "title": "OM class objects", "object": "testOM", "class": [ "OM" ], "fields": [], "table": false, "tojson": false }, { "name": "Toothfish", "title": "Stock class objects", "object": "Toothfish", "class": [ "Stock" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "addMMPs", "title": "Utility functions for multiMSE objects", "topics": [ "addMMPs" ] }, { "page": "Stock-class-objects", "title": "Stock class objects", "topics": [ "Albacore", "Bluefin_tuna", "Bluefin_tuna_WAtl", "Blue_shark", "Butterfish", "Herring", "Mackerel", "Porgy", "Rockfish", "Snapper", "Sole", "Stock-class-objects", "Toothfish" ] }, { "page": "MOM-class-objects", "title": "MOM class objects", "topics": [ "Albacore_TwoFleet", "MOM-class-objects" ] }, { "page": "applyMMP", "title": "Apply multi Management Procedures (class MMP) to a hierarchical list of Data class objects", "topics": [ "applyMMP" ] }, { "page": "applyMP", "title": "Apply Management Procedures to an object of class Data", "topics": [ "applyMP" ] }, { "page": "ASAP2OM", "title": "Convert ASAP 3 assessments into an operating model", "topics": [ "ASAP2Data", "ASAP2OM" ] }, { "page": "Assess2MOM", "title": "Reads bootstrap estimates from a stock assessment model into a multi-fleet operating model.", "topics": [ "Assess2MOM" ] }, { "page": "Assess2OM", "title": "Reads bootstrap estimates from a stock assessment model (including VPA) into an operating model. 'Assess2OM' is identical to 'VPA2OM'.", "topics": [ "Assess2OM", "VPA2OM" ] }, { "page": "Data-class-objects", "title": "Data class objects", "topics": [ "Atlantic_mackerel", "China_rockfish", "Cobia", "Data-class-objects", "Example_datafile", "Gulf_blue_tilefish", "ourReefFish", "Red_snapper", "Simulation_1" ] }, { "page": "avail", "title": "What objects of this class are available", "topics": [ "avail" ] }, { "page": "Awatea2OM", "title": "Reads MCMC estimates from Awatea (Paul Starr) processed r file structure into an operating model", "topics": [ "Awatea2OM" ] }, { "page": "BAM2MOM", "title": "Import a multi-stock, multi-fleet OM from a BAM object", "topics": [ "BAM2MOM", "BAM2OM" ] }, { "page": "boxplot.Data", "title": "Boxplot of TAC recommendations", "topics": [ "boxplot.Data" ] }, { "page": "calcRefYield", "title": "Calculate Reference Yield", "topics": [ "calcRefYield" ] }, { "page": "CALsimp", "title": "Simplifies the CAL slot of data object", "topics": [ "CALsimp" ] }, { "page": "Can", "title": "Identify management procedures (MPs) based on data availability", "topics": [ "Can", "Cant", "DLMdiag", "Needed" ] }, { "page": "CheckDuplicate", "title": "Check for duplicated MPs names", "topics": [ "CheckDuplicate" ] }, { "page": "CheckMPs", "title": "Check that specified MPs are valid and will run on MSEtool::SimulatedData", "topics": [ "CheckMPs" ] }, { "page": "checkMSE", "title": "Utility functions for MSE objects", "topics": [ "addMPs", "checkMSE", "joinHist", "joinMSE", "updateMSE" ] }, { "page": "CheckOM", "title": "Check OM object is complete", "topics": [ "CheckOM" ] }, { "page": "Choose", "title": "Manually map parameters for the historical period of operating model", "topics": [ "Choose", "ChooseEffort", "ChooseM", "ChooseSelect" ] }, { "page": "CombineMMP", "title": "Create a blank MP recommendations object (class Rec) of the right dimensions", "topics": [ "CombineMMP" ] }, { "page": "Converge", "title": "Check Convergence", "topics": [ "Converge" ] }, { "page": "Cos_thresh_tab", "title": "Current default thresholds for COSEWIC satisficing", "topics": [ "Cos_thresh_tab" ] }, { "page": "cparscheck", "title": "Internal function for checking that the 'OM@cpars' is formatted correctly", "topics": [ "cparscheck" ] }, { "page": "Cplot", "title": "Plot the median biomass and yield relative to last historical year", "topics": [ "Cplot" ] }, { "page": "Data_xl", "title": "Read in Data object from Excel spreadsheet", "topics": [ "Data_xl" ] }, { "page": "Data-class", "title": "Class ''Data''", "topics": [ "Data-class" ] }, { "page": "Data2csv", "title": "Converts a Data object into a .csv data file", "topics": [ "Data2csv" ] }, { "page": "DataDescription", "title": "DataDescription", "topics": [ "DataDescription" ] }, { "page": "DataDir", "title": "Directory of the data in the installed package on your computer", "topics": [ "DataDir" ] }, { "page": "DataInit", "title": "Initialize Data Input Files", "topics": [ "DataInit" ] }, { "page": "DataSlots", "title": "DataSlots", "topics": [ "DataSlots" ] }, { "page": "Fleet-class-objects", "title": "Fleet class objects", "topics": [ "DecE_Dom", "DecE_HDom", "DecE_NDom", "FlatE_Dom", "FlatE_HDom", "FlatE_NDom", "Fleet-class-objects", "Generic_DecE", "Generic_FlatE", "Generic_Fleet", "Generic_IncE", "IncE_HDom", "IncE_NDom", "Low_Effort_Non_Target", "Targeting_Small_Fish", "Target_All_Fish" ] }, { "page": "DFO_bar", "title": "Department of Fisheries and Oceans stock status bar plot", "topics": [ "DFO_bar" ] }, { "page": "DFO_hist", "title": "Department of Fisheries and Oceans historical plot", "topics": [ "DFO_hist" ] }, { "page": "DFO_plot", "title": "Department of Fisheries and Oceans trade-off plot", "topics": [ "DFO_plot" ] }, { "page": "DFO_plot2", "title": "Department of Fisheries and Oceans default plot 2", "topics": [ "DFO_plot2" ] }, { "page": "DFO_proj", "title": "Department of Fisheries and Oceans projection plot", "topics": [ "DFO_proj" ] }, { "page": "DFO_quant", "title": "Department of Fisheries and Oceans biomass quantile plot", "topics": [ "DFO_quant" ] }, { "page": "DFO_report", "title": "Create a standard DFO MSE report", "topics": [ "DFO_report" ] }, { "page": "DFO_spider", "title": "DFO performance spider plot (top three MPs)", "topics": [ "DFO_spider" ] }, { "page": "DFO_tab", "title": "Create a standard DFO performance table", "topics": [ "DFO_tab" ] }, { "page": "DFO_tab_formatted", "title": "A formatted version of the standard DFO performance plot, color coded by thresholds", "topics": [ "DFO_tab_formatted" ] }, { "page": "DLMDataDir", "title": "Directory of the installed package on your computer", "topics": [ "DLMDataDir" ] }, { "page": "dnormal", "title": "Double-normal selectivity curve", "topics": [ "dnormal" ] }, { "page": "doHCR", "title": "Hockey Stick Harvest control rule that modifies TAC.", "topics": [ "doHCR" ] }, { "page": "doIfreq", "title": "Create indices that are sampled at various frequencies", "topics": [ "doIfreq" ] }, { "page": "Dom", "title": "Determine dominate MPs", "topics": [ "Dom" ] }, { "page": "doRec", "title": "Calculate a management recommendation given constraints", "topics": [ "doRec" ] }, { "page": "Emp", "title": "A flexible empirical management procedure.", "topics": [ "Emp" ] }, { "page": "Fease", "title": "MP feasibility diagnostic", "topics": [ "Fease" ] }, { "page": "Fleet-class", "title": "Class ''Fleet''", "topics": [ "Fleet-class" ] }, { "page": "FleetDescription", "title": "FleetDescription", "topics": [ "FleetDescription" ] }, { "page": "FMSYref", "title": "Reference management procedures", "topics": [ "curEref", "FMSYref", "FMSYref50", "FMSYref75", "NFref" ] }, { "page": "Obs-class-objects", "title": "Obs class objects", "topics": [ "Generic_Obs", "Imprecise_Biased", "Imprecise_Unbiased", "Obs-class-objects", "Perfect_Info", "Precise_Biased", "Precise_Unbiased" ] }, { "page": "getclass", "title": "get object class", "topics": [ "getclass" ] }, { "page": "getDataList", "title": "Get part of an MP specific data-list", "topics": [ "getDataList" ] }, { "page": "getfirstlev", "title": "Extract the first dimension of a hierarchical list of recommendation objects", "topics": [ "getfirstlev" ] }, { "page": "getmov2", "title": "Optimization function to find a movement model that matches user specified movement characteristics modified for Rcpp.", "topics": [ "getmov2" ] }, { "page": "getMP", "title": "Search R session for MP", "topics": [ "getMP" ] }, { "page": "getnIVs", "title": "Count independent variables for a MICE relationship at position x in a Rel list", "topics": [ "getnIVs" ] }, { "page": "getsel", "title": "Calculate selectivity curve", "topics": [ "getsel" ] }, { "page": "hconv", "title": "Stock recruit parameterization", "topics": [ "hconv", "R0conv", "SRalphaconv", "SRbetaconv" ] }, { "page": "Herm-int", "title": "Internal Herm functions", "topics": [ "checkHerm", "expandHerm", "Herm-int", "subsetHerm" ] }, { "page": "Hist-class", "title": "Class ''Hist''", "topics": [ "Hist-class" ] }, { "page": "hist2", "title": "Wrapper for histogram function", "topics": [ "hist2" ] }, { "page": "HistDescription", "title": "HistDescription", "topics": [ "HistDescription" ] }, { "page": "Imp-class", "title": "Class ''Imp''", "topics": [ "Imp-class" ] }, { "page": "ImpDescription", "title": "ImpDescription", "topics": [ "ImpDescription" ] }, { "page": "initialize-methods", "title": "~~ Methods for Function 'initialize' ~~", "topics": [ "initialize", "initialize,Data-method", "initialize,DLM_general-method", "initialize,Fease-method", "initialize,Fleet-method", "initialize,MSE-method", "initialize,Obs-method", "initialize,OM-method", "initialize,Stock-method", "initialize-methods" ] }, { "page": "Input", "title": "Function to run a set of input control methods", "topics": [ "Input" ] }, { "page": "iSCAM", "title": "Reads iSCAM files into a hierarchical R list object", "topics": [ "fetch.file.names", "iSCAM", "load.iscam.files", "read.control.file", "read.data.file", "read.mcmc", "read.par.file", "read.projection.file", "read.report.file" ] }, { "page": "iSCAM2OM", "title": "Reads MPD or MCMC estimates and data from iSCAM file structure into an operating model", "topics": [ "iSCAM2Data", "iSCAM2OM" ] }, { "page": "iSCAMcomps", "title": "Combines all iSCAM age composition data across fleets", "topics": [ "iSCAMcomps" ] }, { "page": "iSCAMinds", "title": "Combines indices into a single index using linear modelling (** Deprecated **)", "topics": [ "iSCAMinds" ] }, { "page": "join_plots", "title": "Plot several plots with a shared legend", "topics": [ "join_plots" ] }, { "page": "joinData", "title": "Join Data objects present in a list", "topics": [ "joinData" ] }, { "page": "Kplot", "title": "KOBE plot: a projection by projection plot of F/FMSY and B/BMSY", "topics": [ "Kplot" ] }, { "page": "Lag_Data", "title": "Lag the time-series slots in a 'Data' object by a specified number of time-steps", "topics": [ "Lag_Data" ] }, { "page": "ldim", "title": "Dimensions of a hierarchical list object", "topics": [ "ldim" ] }, { "page": "LH2OM", "title": "Predict missing life-history parameters", "topics": [ "LH2OM", "predictLH" ] }, { "page": "LHdatabase", "title": "LHdatabase", "topics": [ "LHdatabase" ] }, { "page": "makeMOM", "title": "Utility for making multi-OMs", "topics": [ "makeMOM" ] }, { "page": "makemov", "title": "Calculates movement matrices from user inputs for fraction in each area (fracs) and probability of staying in areas (prob)", "topics": [ "makemov" ] }, { "page": "makemov2", "title": "Calculates movement matrices from user inputs for fraction in each area (fracs) the relative fraction moving to other areas, plus a mean probability of staying in any given area.", "topics": [ "makemov2" ] }, { "page": "makeRel", "title": "MICE relationships for multi-OM", "topics": [ "makeRel", "predict.Rel", "print.Rel", "simulate.Rel" ] }, { "page": "makeTransparent", "title": "Make colors transparent", "topics": [ "makeTransparent" ] }, { "page": "ML2D", "title": "Depletion and F estimation from mean length of catches", "topics": [ "ML2D" ] }, { "page": "MMSE-class", "title": "Class ''MMSE''", "topics": [ "MMSE-class" ] }, { "page": "MOM-class", "title": "Class ''MOM''", "topics": [ "MOM-class" ] }, { "page": "movestockCPP", "title": "Apply the movement model to the stock for one time-step", "topics": [ "movestockCPP" ] }, { "page": "movfit_Rcpp", "title": "Rcpp version of the Optimization function that returns the squared difference between user specified and calculated movement parameters.", "topics": [ "movfit_Rcpp" ] }, { "page": "MPCalcsNAs", "title": "Fill any NAs arising from MPCalcs (hermaphroditism mode)", "topics": [ "MPCalcsNAs" ] }, { "page": "MPtype", "title": "Management Procedure Type", "topics": [ "MPtype" ] }, { "page": "MSE-class", "title": "Class ''MSE''", "topics": [ "MSE-class" ] }, { "page": "MSEDescription", "title": "MSEDescription", "topics": [ "MSEDescription" ] }, { "page": "MSEextra", "title": "Load more data from MSEextra package", "topics": [ "MSEextra" ] }, { "page": "MSYCalcs", "title": "Internal function to calculate MSY Reference Points", "topics": [ "MSYCalcs" ] }, { "page": "multiData", "title": "Combine data among fleets", "topics": [ "multiData" ] }, { "page": "multiDataS", "title": "Combine data among stocks", "topics": [ "multiDataS" ] }, { "page": "multidebug", "title": "A basic comparison of runMSE output (MSE) and multiMSE (MMSE)", "topics": [ "multidebug" ] }, { "page": "NIL", "title": "Item in list: get the list values from a list of lists", "topics": [ "NIL" ] }, { "page": "NOAA_plot", "title": "National Oceanographic and Atmospheric Administration default plot 1", "topics": [ "NOAA_plot" ] }, { "page": "Obs-class", "title": "Class ''Obs''", "topics": [ "Obs-class" ] }, { "page": "ObsDescription", "title": "ObsDescription", "topics": [ "ObsDescription" ] }, { "page": "OM-class", "title": "Class ''OM''", "topics": [ "OM-class" ] }, { "page": "OMDescription", "title": "OMDescription", "topics": [ "OMDescription" ] }, { "page": "OMdoc", "title": "Generate OM Documentation Report", "topics": [ "OMdoc" ] }, { "page": "OMexample", "title": "Copy example OM XL and OM Documentation", "topics": [ "OMexample" ] }, { "page": "OMinit", "title": "Initialize Operating Model", "topics": [ "OMinit" ] }, { "page": "optCPU", "title": "Determine optimal number of cpus", "topics": [ "optCPU" ] }, { "page": "Imp-class-objects", "title": "Imp class objects", "topics": [ "Imp-class-objects", "Overages", "Perfect_Imp" ] }, { "page": "PerformanceMetric", "title": "Performance Metrics Methods", "topics": [ "AAVE", "AAVY", "LTY", "P10", "P100", "P50", "PerformanceMetric", "PGK", "PNOF", "STY", "Yield" ] }, { "page": "plot.Data", "title": "Plot Data object", "topics": [ "plot.Data" ] }, { "page": "plot.MMSE", "title": "Standard plot for an object of class MMSE (multi MSE)", "topics": [ "plot.MMSE" ] }, { "page": "plot.MOM", "title": "Standard plot for an object of class MOM", "topics": [ "plot,MOM,missing-method", "plot.MOM" ] }, { "page": "plot.MSE", "title": "Plot MSE object", "topics": [ "plot.MSE" ] }, { "page": "plot.Stock", "title": "Plot Operating Model Object", "topics": [ "plot.Fleet", "plot.Hist", "plot.Imp", "plot.Obs", "plot.OM", "plot.pars", "plot.Stock" ] }, { "page": "plotFun", "title": "Print out plotting functions", "topics": [ "plotFun" ] }, { "page": "plotmulti", "title": "A basic SSB plot for debugging runMSE output", "topics": [ "plotmulti" ] }, { "page": "plotOFL", "title": "A generic OFL plot for NOAA use", "topics": [ "plotOFL" ] }, { "page": "plotquant", "title": "A fairly tidy time-series quantile plot", "topics": [ "plotquant" ] }, { "page": "plotRel", "title": "Plot a relationship between stocks", "topics": [ "plotRel" ] }, { "page": "PMLimit", "title": "Create a table of Performance Limits and Performance Objectives", "topics": [ "PMLimit", "PMObj" ] }, { "page": "PMobj-class", "title": "An object for storing data for analysis using data-limited methods", "topics": [ "PMobj-class" ] }, { "page": "Pplot", "title": "A projection by projection plot of F/FMSY and B/BMSY", "topics": [ "Pplot" ] }, { "page": "Pplot2", "title": "A projection by projection plot of F/FMSY, B/BMSY, B/B0, and yield", "topics": [ "Pplot2" ] }, { "page": "print.multiHist", "title": "Print method for 'multiHist' objects", "topics": [ "print.multiHist" ] }, { "page": "PWhisker", "title": "Performance Whisker Plot", "topics": [ "PWhisker" ] }, { "page": "quantile_plot", "title": "A quantile plot", "topics": [ "quantile_plot" ] }, { "page": "RealFease", "title": "MP feasibility diagnostic using real data", "topics": [ "RealFease" ] }, { "page": "Rec-class", "title": "Class ''Rec''", "topics": [ "Rec-class" ] }, { "page": "Replace", "title": "Replace an existing Stock, Fleet, Obs, or Imp object", "topics": [ "Replace" ] }, { "page": "replic8", "title": "Enlarge (replicate) a DLM data object to create an additional dimension for simulation / sensitivity testing", "topics": [ "replic8" ] }, { "page": "Report", "title": "Generate a Data Report", "topics": [ "Report" ] }, { "page": "ReqData", "title": "ReqData", "topics": [ "ReqData" ] }, { "page": "Required", "title": "What management procedures need what data", "topics": [ "Required" ] }, { "page": "runCOSEWIC", "title": "COSEWIC MSE run using the correct MPs and projected time horizon", "topics": [ "COSEWIC_Blow", "COSEWIC_Dplot", "COSEWIC_Hplot", "COSEWIC_Pplot", "COSEWIC_report", "COSEWIC_tab", "COSEWIC_tab_formatted", "runCOSEWIC" ] }, { "page": "runInMP", "title": "Runs input control MPs on a Data object.", "topics": [ "runInMP" ] }, { "page": "runMP", "title": "Run a Management Procedure", "topics": [ "runMP" ] }, { "page": "select_MP", "title": "Select DataList for an MP from 'MMSE@PPD'", "topics": [ "select_MP" ] }, { "page": "Sense", "title": "Sensitivity analysis", "topics": [ "Sense" ] }, { "page": "setup", "title": "Setup parallel processing", "topics": [ "setup" ] }, { "page": "show-MSEtool", "title": "Show MSEtool S4 objects", "topics": [ "show", "show,Data-method", "show,Hist-method", "show,MMSE-method", "show,MOM-method", "show,MSE-method", "show,OM-method", "show-MSEtool" ] }, { "page": "show-MSE", "title": "Show the output of a PM", "topics": [ "show,PMobj-method" ] }, { "page": "show-Rec", "title": "Show the output of a single MP recommendation", "topics": [ "show,Rec-method" ] }, { "page": "SIL", "title": "Slot in list: get the slot values from a list of objects", "topics": [ "SIL" ] }, { "page": "simCAA", "title": "Simulate Catch-at-Age Data", "topics": [ "simCAA" ] }, { "page": "simCAL", "title": "Simulate Catch-at-Length Data", "topics": [ "simCAL" ] }, { "page": "simmov", "title": "Calculates movement matrices from user inputs", "topics": [ "plot_mov", "simmov" ] }, { "page": "simmov2", "title": "Calculates movement matrices from user specified distribution among other areas", "topics": [ "simmov2" ] }, { "page": "runMSE", "title": "Run a Management Strategy Evaluation", "topics": [ "Project", "runMSE", "Simulate" ] }, { "page": "SimulatedData", "title": "SimulatedData Data", "topics": [ "SimulatedData" ] }, { "page": "multiMSE", "title": "Run a multi-fleet multi-stock Management Strategy Evaluation", "topics": [ "multiMSE", "ProjectMOM", "SimulateMOM" ] }, { "page": "SketchFun", "title": "Manually map the historical relative fishing effort trajectory.", "topics": [ "SketchFun" ] }, { "page": "smoothy", "title": "General purpose polynomial smoother", "topics": [ "smoothy" ] }, { "page": "Splot", "title": "Standard MSE projection plot", "topics": [ "Splot" ] }, { "page": "SS2Data", "title": "Reads data Stock Synthesis file structure into a Data object using package r4ss", "topics": [ "SS2Data" ] }, { "page": "SS2DataMOM", "title": "Reads data Stock Synthesis file structure into a nested Data object analogous with multiMSE", "topics": [ "SS2DataMOM" ] }, { "page": "SS2MOM", "title": "Import Stock Synthesis to MOM (2-sex multi-fleet) or OM (single-sex, single-fleet)", "topics": [ "MOM_agg_fleets", "plot_SS2MOM", "plot_SS2OM", "SS2MOM", "SS2OM", "SSMOM2OM" ] }, { "page": "SSBrefplot", "title": "Plot Spawning stock biomass and reference points for both historical and projected period", "topics": [ "SSBrefplot" ] }, { "page": "Stock-class", "title": "Class ''Stock''", "topics": [ "Stock-class" ] }, { "page": "StockDescription", "title": "StockDescription", "topics": [ "StockDescription" ] }, { "page": "Sub", "title": "Subset MSE object by management procedure (MP) or simulation.", "topics": [ "Sub" ] }, { "page": "SubCpars", "title": "Subset the cpars slot in an operating model", "topics": [ "SubCpars", "SubCpars,MOM-method", "SubCpars,OM-method" ] }, { "page": "SubOM", "title": "Subset a Stock, Fleet, Obs, or Imp object from an OM object", "topics": [ "SubOM" ] }, { "page": "summary-Data", "title": "Summary of Data object", "topics": [ "summary,Data-method" ] }, { "page": "summary-MMSE", "title": "Summary of MMSE object", "topics": [ "summary,MMSE-method" ] }, { "page": "summary-MSE", "title": "Summary of MSE object", "topics": [ "summary,MSE-method" ] }, { "page": "TAC", "title": "Calculate TAC recommendations for more than one MP", "topics": [ "TAC" ] }, { "page": "TACfilter", "title": "TAC Filter", "topics": [ "TACfilter" ] }, { "page": "Taxa_Table", "title": "Taxa_Table", "topics": [ "Taxa_Table" ] }, { "page": "TEG", "title": "Tom's expand grid", "topics": [ "TEG" ] }, { "page": "OM-class-objects", "title": "OM class objects", "topics": [ "OM-class-objects", "testOM" ] }, { "page": "Thresh_tab", "title": "Current default thresholds for DFO satisficing", "topics": [ "Thresh_tab" ] }, { "page": "tinyErr", "title": "Remove observation, implementation, and process error", "topics": [ "tinyErr", "tinyErr,OM-method" ] }, { "page": "TradePlot", "title": "Generic Trade-Plot Function", "topics": [ "NOAA_plot2", "Tplot", "Tplot2", "Tplot3", "TradePlot" ] }, { "page": "tune_MP", "title": "Tune MP", "topics": [ "tune_MP" ] }, { "page": "Turing", "title": "Turing Test", "topics": [ "Turing", "TuringMOM" ] }, { "page": "Uses", "title": "Find the Management Procedures that use a particular data slot", "topics": [ "Uses" ] }, { "page": "validcpars", "title": "Valid custom parameters (cpars)", "topics": [ "validcpars" ] }, { "page": "VOI", "title": "Calculate Value Of Information", "topics": [ "VOI" ] }, { "page": "VOI2", "title": "Calculate Value Of Information 2", "topics": [ "VOI2" ] }, { "page": "VOIplot", "title": "Yet another Value of Information Plot", "topics": [ "VOIplot" ] }, { "page": "WHAM2OM", "title": "Takes a fitted SAM model and samples historical population and fishing dynamics from the MLE fit and variance-covariance matrix.", "topics": [ "WHAM2OM" ] }, { "page": "wormplot", "title": "Biomass wormplot", "topics": [ "wormplot" 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