{ "_id": "6a267346794753ddbc3eb229", "Package": "JATSdecoder", "Title": "A Metadata and Text Extraction and Manipulation Tool Set", "Date": "2026-04-09", "Version": "1.3.1", "Authors@R": "c(person(\"Ingmar\", \"Böschen\", email = \"ingmar.boeschen@uni-hamburg.de\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-1159-3991\")))", "Maintainer": "Ingmar Böschen ", "Description": "Provides a function collection to extract metadata,\nsectioned text and study characteristics from scientific\narticles in 'NISO-JATS' format. Articles in PDF format can be\nconverted to 'NISO-JATS' with the 'Content ExtRactor and MINEr'\n('CERMINE', ). For\nconvenience, two functions bundle the extraction heuristics:\nJATSdecoder() converts 'NISO-JATS'-tagged XML files to a\nstructured list with elements title, author, journal, history,\n'DOI', abstract, sectioned text and reference list.\nstudy.character() extracts multiple study characteristics like\nnumber of included studies, statistical methods used, alpha\nerror, power, statistical results, correction method for\nmultiple testing, software used. The function get.stats()\nextracts all statistical results from text and recomputes\np-values for many standard test statistics. It performs a\nconsistency check of the reported with the recalculated\np-values. An estimation of the involved sample size is\nperformed based on textual reports within the abstract and the\nreported degrees of freedom within statistical results. In\naddition, the package contains some useful functions to process\ntext (text2sentences(), text2num(), ngram(), strsplit2(),\ngrep2()). See Böschen, I. (2021)\n Böschen, I. (2021)\n, Böschen, I. (2023)\n, and Böschen, I. (2024)\n.", "License": "GPL-3", "URL": "https://github.com/ingmarboeschen/JATSdecoder", "BugReports": "https://github.com/ingmarboeschen/JATSdecoder/issues", "Language": "en-US", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-08 07:42:54 UTC", "User": "root" }, "Author": "Ingmar Böschen [aut, cre] (ORCID:\n)", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2026-04-09 09:43:39 UTC", "RemoteUrl": "https://github.com/cran/JATSdecoder", "RemoteRef": "HEAD", "RemoteSha": "a5cdccc42de2f1556fdfb8cb5fec83fa558b3b0b", "MD5sum": "58458574e29de8e41247ccb9ce56492f", "_user": "cran", "_type": "src", "_file": "JATSdecoder_1.3.1.tar.gz", "_fileid": "591f2f3ff08139adec47033caec3f0a4f5b331d16acbbff7bc45dc0f31a55f36", "_filesize": 408602, "_sha256": "591f2f3ff08139adec47033caec3f0a4f5b331d16acbbff7bc45dc0f31a55f36", "_created": "2026-06-08T07:42:54.000Z", "_published": "2026-06-08T07:46:14.576Z", "_distro": "noble", "_jobs": [ { "job": 80045068061, "time": 127, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7474213800" }, { "job": 80045067952, "time": 122, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7474211989" }, { "job": 80044509823, "time": 220, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7474173388" }, { "job": 80045067965, "time": 107, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7474207857" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/27123015860", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/JATSdecoder", "_commit": { "id": "a5cdccc42de2f1556fdfb8cb5fec83fa558b3b0b", "author": "Ingmar Böschen ", "committer": "cran-robot ", "message": "version 1.3.1\n", "time": 1775727819 }, "_maintainer": { "name": "Ingmar Böschen", "email": "ingmar.boeschen@uni-hamburg.de", "login": "ingmarboeschen", "description": "", "uuid": 55027155, "orcid": "0000-0003-1159-3991" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.1", "role": "Depends" }, { "package": "utils", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "NLP", "role": "Imports" }, { "package": "openNLP", "role": "Imports" } ], "_owner": "cran", "_selfowned": false, "_usedby": 1, "_updates": [ { "week": "2025-31", "n": 1 }, { "week": "2026-02", "n": 1 }, { "week": "2026-08", "n": 1 }, { "week": "2026-15", "n": 1 } ], "_tags": [ { "name": "1.2.1", "date": "2025-07-29" }, { "name": "1.2.2", "date": "2026-01-08" }, { "name": "1.3.0", "date": "2026-02-16" }, { "name": "1.3.1", "date": "2026-04-09" } ], "_stars": 0, "_contributors": [ { "user": "ingmarboeschen", "count": 8, "uuid": 55027155 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 539, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/JATSdecoder" }, "_devurl": "https://github.com/ingmarboeschen/jatsdecoder", "_searchresults": 8, "_topics": [ "openjdk" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/JATSdecoder.html", "manual.pdf" ], "_homeurl": "https://github.com/ingmarboeschen/jatsdecoder", "_realowner": "ingmarboeschen", "_cranurl": false, "_releases": [ { "version": "1.1", "date": "2022-09-30" }, { "version": "1.1.1", "date": "2022-10-21" }, { "version": "1.1.2", "date": "2023-02-27" }, { "version": "1.2.0", "date": "2023-10-12" }, { "version": "1.2.1", "date": "2025-08-01" }, { "version": "1.2.2", "date": "2026-01-08" }, { "version": "1.3.0", "date": "2026-02-16" }, { "version": "1.3.1", "date": "2026-04-09" } ], "_exports": [ "allStats", "est.ss", "get.abstract", "get.aff", "get.alpha.error", "get.assumptions", "get.author", "get.category", "get.contrib", "get.country", "get.doi", "get.editor", "get.history", "get.journal", "get.keywords", "get.method", "get.multi.comparison", "get.n.studies", "get.outlier.def", "get.power", "get.R.package", "get.references", "get.sentence.with.pattern", "get.sig.adjectives", "get.software", "get.stats", "get.subject", "get.tables", "get.test.direction", "get.text", "get.title", "get.type", "get.vol", "grep2", "has.interaction", "JATSdecoder", "letter.convert", "ngram", "pCheck", "preCheck", "standardStats", "strsplit2", "study.character", "text2num", "text2sentences", "vectorize.text", "which.term" ], "_help": [ { "page": "allStats", "title": "allStats", "topics": [ "allStats" ] }, { "page": "est.ss", "title": "est.ss", "topics": [ "est.ss" ] }, { "page": "get.abstract", "title": "get.abstract", "topics": [ "get.abstract" ] }, { "page": "get.aff", "title": "get.aff", "topics": [ "get.aff" ] }, { "page": "get.alpha.error", "title": "get.alpha.error", "topics": [ "get.alpha.error" ] }, { "page": "get.assumptions", "title": "get.assumptions", "topics": [ "get.assumptions" ] }, { "page": "get.author", "title": "get.author", "topics": [ "get.author" ] }, { "page": "get.category", "title": "get.category", "topics": [ "get.category" ] }, { "page": "get.country", "title": "get.country", "topics": [ "get.country" ] }, { "page": "get.doi", "title": "get.doi", "topics": [ "get.doi" ] }, { "page": "get.editor", "title": "get.editor", "topics": [ "get.editor" ] }, { "page": "get.history", "title": "get.history", "topics": [ "get.history" ] }, { "page": "get.journal", "title": "get.journal", "topics": [ "get.journal" ] }, { "page": "get.keywords", "title": "get.keywords", "topics": [ "get.keywords" ] }, { "page": "get.method", "title": "get.method", "topics": [ "get.method" ] }, { "page": "get.multi.comparison", "title": "get.multi.comparison", "topics": [ "get.multi.comparison" ] }, { "page": "get.n.studies", "title": "get.n.studies", "topics": [ "get.n.studies" ] }, { "page": "get.outlier.def", "title": "get.outlier.def", "topics": [ "get.outlier.def" ] }, { "page": "get.power", "title": "get.power", "topics": [ "get.power" ] }, { "page": "get.R.package", "title": "get.R.package", "topics": [ "get.R.package" ] }, { "page": "get.references", "title": "get.references", "topics": [ "get.references" ] }, { "page": "get.sig.adjectives", "title": "get.sig.adjectives", "topics": [ "get.sig.adjectives" ] }, { "page": "get.software", "title": "get.software", "topics": [ "get.software" ] }, { "page": "get.stats", "title": "get.stats", "topics": [ "get.stats" ] }, { "page": "get.subject", "title": "get.subject", "topics": [ "get.subject" ] }, { "page": "get.tables", "title": "get.tables", "topics": [ "get.tables" ] }, { "page": "get.test.direction", "title": "get.test.direction", "topics": [ "get.test.direction" ] }, { "page": "get.text", "title": "get.text", "topics": [ "get.text" ] }, { "page": "get.title", "title": "get.title", "topics": [ "get.title" ] }, { "page": "get.type", "title": "get.type", "topics": [ "get.type" ] }, { "page": "get.vol", "title": "get.vol", "topics": [ "get.vol" ] }, { "page": "grep2", "title": "grep2", "topics": [ "grep2" ] }, { "page": "has.interaction", "title": "has.interaction", "topics": [ "has.interaction" ] }, { "page": "JATSdecoder", "title": "JATSdecoder", "topics": [ "JATSdecoder" ] }, { "page": "letter.convert", "title": "letter.convert", "topics": [ "letter.convert" ] }, { "page": "ngram", "title": "ngram", "topics": [ "ngram" ] }, { "page": "pCheck", "title": "pCheck", "topics": [ "pCheck" ] }, { "page": "standardStats", "title": "standardStats", "topics": [ "standardStats" ] }, { "page": "strsplit2", "title": "strsplit2", "topics": [ "strsplit2" ] }, { "page": "study.character", "title": "study.character", "topics": [ "study.character" ] }, { "page": "text2num", "title": "text2num", "topics": [ "text2num" ] }, { "page": "text2sentences", "title": "text2sentences", "topics": [ "text2sentences" ] }, { "page": "vectorize.text", "title": "vectorize.text", "topics": [ "vectorize.text" ] }, { "page": "which.term", "title": "which.term", "topics": [ "which.term" ] } ], "_rundeps": [ "NLP", "openNLP", "openNLPdata", "rJava" ], "_sysdeps": [ { "shlib": "libjvm", "package": "openjdk-21-jre-headless", "headers": "openjdk-21-jre-headless", "source": "openjdk", "version": "21.0.11+10-1~24.04.2", "name": "openjdk", "homepage": "https://openjdk.java.net/", "description": "OpenJDK Java runtime, using Hotspot JIT (headless)" } ], "_score": 2.0791812460476247, "_indexed": false, "_nocasepkg": "jatsdecoder", "_universes": [ "cran" ], "_indexurl": "https://ingmarboeschen.r-universe.dev/JATSdecoder", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.3.1", "date": "2026-06-08T07:45:23.000Z", "distro": "noble", "commit": "a5cdccc42de2f1556fdfb8cb5fec83fa558b3b0b", "fileid": "8a8d81ed1d1c13bea801fed56578da21a10913d6df73f5c76f94836a7a646132", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27123015860" }, { "r": "4.6.0", "os": "linux", "version": "1.3.1", "date": "2026-06-08T07:45:17.000Z", "distro": "noble", "commit": "a5cdccc42de2f1556fdfb8cb5fec83fa558b3b0b", "fileid": "92f66e324859791f43dbe47176714c5700ebfbaaf1d40b11f744e6e0afa7b66a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27123015860" }, { "r": "4.6.0", "os": "wasm", "version": "1.3.1", "date": "2026-06-08T07:45:37.000Z", "commit": "a5cdccc42de2f1556fdfb8cb5fec83fa558b3b0b", "fileid": "b4fc54cbab0ad9ba0602d9e242685fb9beb833c2e74d9d515edd882d00d30344", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/27123015860" } ] }