{
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  "Title": "Allele-Specific Methylation Analysis for Imprinted DMR\nDiagnostics",
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  "Authors@R": "c(person(given = \"Subham\", family = \"Saha\",\nemail = \"saha_19@outlook.com\",\nrole = c(\"aut\", \"cre\", \"cph\")),\nperson(given = \"Francesco\", family = \"Cecere\",\nemail = \"francesco.cecerengs@gmail.com\",\nrole = \"aut\"),\nperson(given = \"Frederic\", family = \"Brioude\",\nemail = \"frederic.brioude@aphp.fr\",\nrole = c(\"aut\", \"fnd\")))",
  "Description": "Provides functions for SNP-phased allele-specific\nmethylation (ASM) analysis across the 41 canonical human\nimprinted differentially methylated regions (DMRs). Reads are\nassigned to REF or ALT alleles based on bisulfite-aware SNP\ndetection, enabling diagnosis of imprinting disorders from\nwhole-genome bisulfite sequencing data.\n<https://github.com/19-saha/ImprintCapASM>.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
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      "page": "ASM",
      "title": "Run Allele-Specific Methylation Analysis",
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      "engine": "knitr::rmarkdown",
      "headings": [
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        "Installation",
        "Requirements",
        "Input files",
        "Running the full pipeline",
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        "Step 2 — extract_bam_regions()",
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      "created": "2026-06-30 18:40:08",
      "modified": "2026-06-30 18:40:08",
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