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  "Package": "HiddenMarkov",
  "Title": "Hidden Markov Models",
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  "Date": "2025-02-28",
  "Authors@R": "person(given = \"David\",\nfamily = \"Harte\",\nrole = c(\"aut\", \"cre\"),\nemail = \"d.s.harte@gmail.com\")",
  "Description": "Contains functions for the analysis of Discrete Time\nHidden Markov Models, Markov Modulated GLMs and the Markov\nModulated Poisson Process. It includes functions for\nsimulation, parameter estimation, and the Viterbi algorithm.\nSee the topic \"HiddenMarkov\" for an introduction to the\npackage, and \"Change Log\" for a list of recent changes. The\nalgorithms are based of those of Walter Zucchini.",
  "License": "GPL (>= 2)",
  "URL": "https://www.statsresearch.co.nz/dsh/sslib/",
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    "Baum.Welch.mmpp",
    "Baum.Welch0.mmpp",
    "BaumWelch",
    "bwcontrol",
    "compdelta",
    "dmmglm",
    "dthmm",
    "Estep",
    "Estep.mmglm1",
    "Estep.mmpp",
    "Estep0.mmpp",
    "forward",
    "forward0.mmpp",
    "forwardback",
    "forwardback.dthmm",
    "forwardback.mmpp",
    "logLikmmpp",
    "mchain",
    "mmglm",
    "mmglm0",
    "mmglm1",
    "mmglmlong1",
    "mmpp",
    "Mstep.beta",
    "Mstep.binom",
    "Mstep.exp",
    "Mstep.gamma",
    "Mstep.glm",
    "Mstep.lnorm",
    "Mstep.logis",
    "Mstep.mmglm1",
    "Mstep.norm",
    "Mstep.pois",
    "neglogLik",
    "Pi2vector",
    "pmmglm",
    "probhmm",
    "Q2vector",
    "residualshmm",
    "sim.hmm",
    "sim.hmm1",
    "sim.markov",
    "sim.mmpp",
    "vector2Pi",
    "vector2Q",
    "Viterbi",
    "Viterbihmm"
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      "page": "HiddenMarkov",
      "title": "Overview of Package HiddenMarkov",
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        "HiddenMarkov"
      ]
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      "title": "Estimation Using Baum-Welch Algorithm",
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        "BaumWelch",
        "BaumWelch.dthmm",
        "BaumWelch.mmglm0",
        "BaumWelch.mmglm1",
        "BaumWelch.mmglmlong1",
        "BaumWelch.mmpp"
      ]
    },
    {
      "page": "bwcontrol",
      "title": "Control Parameters for Baum Welch Algorithm",
      "topics": [
        "bwcontrol"
      ]
    },
    {
      "page": "Changes",
      "title": "Changes Made to Package HiddenMarkov",
      "topics": [
        "Changes"
      ]
    },
    {
      "page": "compdelta",
      "title": "Marginal Distribution of Stationary Markov Chain",
      "topics": [
        "compdelta"
      ]
    },
    {
      "page": "Demonstration",
      "title": "Demonstration Examples",
      "topics": [
        "Demonstration"
      ]
    },
    {
      "page": "dthmm",
      "title": "Discrete Time HMM Object (DTHMM)",
      "topics": [
        "dthmm"
      ]
    },
    {
      "page": "Estep",
      "title": "E-Step of EM Algorithm for DTHMM",
      "topics": [
        "Estep"
      ]
    },
    {
      "page": "forwardback",
      "title": "Forward and Backward Probabilities of DTHMM",
      "topics": [
        "backward",
        "forward",
        "forwardback",
        "forwardback.dthmm"
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    },
    {
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      "title": "Log Likelihood of Hidden Markov Model",
      "topics": [
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        "logLik.dthmm",
        "logLik.mmglm0",
        "logLik.mmglm1",
        "logLik.mmglmlong1",
        "logLik.mmpp"
      ]
    },
    {
      "page": "mchain",
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      "topics": [
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      ]
    },
    {
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      "title": "Markov Modulated GLM Object",
      "topics": [
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        "mmglm1",
        "mmglmlong1"
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    {
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      "title": "Markov Modulated Generalised Linear Model - 2nd Level Functions",
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        "mmglm-2nd-level-functions",
        "Mstep.mmglm1"
      ]
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        "mmpp"
      ]
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      "title": "Markov Modulated Poisson Process - 2nd Level Functions",
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        "forwardback.mmpp",
        "mmpp-2nd-level-functions"
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        "Mstep.beta",
        "Mstep.binom",
        "Mstep.exp",
        "Mstep.gamma",
        "Mstep.glm",
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        "Mstep.logis",
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        "Mstep.pois"
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      "title": "Negative Log-Likelihood",
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        "residuals.dthmm",
        "residuals.mmglm0",
        "residuals.mmglm1",
        "residuals.mmglmlong1"
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        "simulate.dthmm",
        "simulate.mchain",
        "simulate.mmglm0",
        "simulate.mmglm1",
        "simulate.mmglmlong1",
        "simulate.mmpp"
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        "summary.mmglm1",
        "summary.mmglmlong1",
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