{ "_id": "6a27df9d24555f66ed548065", "Package": "HDSpatialScan", "Type": "Package", "Title": "Multivariate and Functional Spatial Scan Statistics", "Version": "1.0.5", "Authors@R": "c(person(\"Camille\", \"FREVENT\", role = c(\"aut\", \"cre\", \"cph\"), email = \"camille.frevent@univ-lille.fr\"), person(\"Mohamed-Salem\", \"AHMED\", role = \"aut\"), person(\"Julien\", \"SOULA\", role = \"aut\"), person(\"Zaineb\", \"SMIDA\", role = \"aut\"), person(\"Lionel\", \"CUCALA\", role = \"aut\"), person(\"Sophie\", \"DABO-NIANG\", role = \"aut\"), person(\"Michaël\", \"GENIN\", role = \"aut\"))", "Description": "Allows to detect spatial clusters of abnormal values on\nmultivariate or functional data (Frévent et al. (2022)\n). See also: Frévent et al. (2023)\n, Smida et al. (2022)\n, Frévent et al. (2021)\n. Cucala et al. (2019)\n, Cucala et al. (2017)\n, Jung and Cho (2015)\n, Kulldorff et al. (2009)\n.", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "Collate": "'documentation_page.R' 'clusters.R' 'permutations.R'\n'gaussian_multi.R' 'wmw_multi.R' 'wmw_fonc.R' 'scan_fonc.R'\n'scan_multi.R' 'plot_map.R' 'RcppExports.R'\n'dfree_index_multi.R' 'pointwise_dfree.R'\n'pointwise_wmw_multi.R' 'pointwise_wmw_uni.R'\n'transform_data.R' 'data_fmulti_data.R' 'data_funi_data.R'\n'data_multi_data.R' 'data_map_sites.R' 'posteriori_filtering.R'\n'non_overlap.R' 'scan_uni.R' 'wmw_uni.R' 'dfree.R'\n'finalizing_scan_procedure.R' 'HDSpatialScan_plot.R'\n'HDSpatialScan_Classes.R' 'HDSpatialScan_plotCurves.R'\n'HDSpatialScan_plotSummary.R' 'HDSpatialScan_print.R'\n'HDSpatialScan_summary.R' 'InitScan.R' 'SpatialScan.R'", "RoxygenNote": "7.3.1", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-09 09:34:36 UTC", "User": "root" }, "Author": "Camille FREVENT [aut, cre, cph], Mohamed-Salem AHMED [aut],\nJulien SOULA [aut], Zaineb SMIDA [aut], Lionel CUCALA [aut],\nSophie DABO-NIANG [aut], Michaël GENIN [aut]", "Maintainer": "Camille FREVENT ", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2025-06-05 16:10:10 UTC", "RemoteUrl": "https://github.com/cran/HDSpatialScan", "RemoteRef": "HEAD", "RemoteSha": "7adf9363bc9e2fffcb36b9aa1c8e5f5a204a618c", "MD5sum": "1a9d9d96c8e655ae4b49e96af8befe07", "_user": "cran", "_type": "src", "_file": "HDSpatialScan_1.0.5.tar.gz", "_fileid": "f02978a9c17208466740d99ad5702ac58492a90e53a8cf763c6a9cc4478eaaf7", "_filesize": 603137, "_sha256": "f02978a9c17208466740d99ad5702ac58492a90e53a8cf763c6a9cc4478eaaf7", "_created": "2026-06-09T09:34:36.000Z", "_published": "2026-06-09T09:40:45.231Z", "_distro": "noble", "_jobs": [ { "job": 80292105915, "time": 264, "config": "linux-devel-arm64", "r": "4.7.0", "check": "OK", "artifact": "7503994430" }, { "job": 80292105913, "time": 251, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7503988714" }, { "job": 80292105962, "time": 271, "config": "linux-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7503997261" }, { "job": 80292105951, "time": 288, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7504002313" }, { "job": 80291372784, "time": 242, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7503898470" }, { "job": 80292106025, "time": 169, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7503959523" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/27197064478", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/HDSpatialScan", "_commit": { "id": "7adf9363bc9e2fffcb36b9aa1c8e5f5a204a618c", "author": "Camille FREVENT ", "committer": "cran-robot ", "message": "version 1.0.5\n", "time": 1749139810 }, "_maintainer": { "name": "Camille FREVENT", "email": "camille.frevent@univ-lille.fr", "login": "camillef-git", "description": "", "uuid": 185193605 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "Rcpp", "role": "LinkingTo" }, { "package": "Rcpp", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "pbapply", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "matrixStats", "role": "Imports" }, { "package": "SpatialNP", "role": "Imports" }, { "package": "sp", "role": "Imports" }, { "package": "sf", "role": "Imports" }, { "package": "DT", "role": "Imports" }, { "package": "TeachingDemos", "role": "Imports" }, { "package": "plotrix", "role": "Imports" }, { "package": "fmsb", "role": "Imports" }, { "package": "swfscMisc", "role": "Imports" }, { "package": "raster", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "camillef-git", "count": 6, "uuid": 185193605 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 248, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/HDSpatialScan" }, "_searchresults": 4, "_topics": [ "openblas", "cpp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/HDSpatialScan.html", "manual.pdf" ], "_realowner": "camillef-git", "_cranurl": false, "_releases": [ { "version": "1.0.0", "date": "2021-05-21" }, { "version": "1.0.1", "date": "2021-05-27" }, { "version": "1.0.2", "date": "2021-07-16" }, { "version": "1.0.3", "date": "2022-08-05" }, { "version": "1.0.4", "date": "2023-05-25" }, { "version": "1.0.5", "date": "2025-06-05" } ], "_exports": [ "plotCurves", "plotSummary", "SpatialScan" ], "_datasets": [ { "name": "fmulti_data", "title": "Multivariate functional data", "object": "fmulti_data", "class": [ "list" ], "fields": [], "table": true, "tojson": true }, { "name": "funi_data", "title": "Univariate functional data", "object": "funi_data", "class": [ "matrix", "array" ], "fields": [ "20200501", "20200502", "20200503", "20200504", "20200505", "20200506", "20200507", "20200508", "20200509", "20200510", "20200511", "20200512", "20200513", "20200514", "20200515", "20200516", "20200517", "20200518", "20200519", "20200520", "20200521", "20200522", "20200523", "20200524", "20200525", "20200526", "20200527", "20200528", "20200529", "20200530", "20200531", "20200601", "20200602", "20200603", "20200604", "20200605", "20200606", "20200607", "20200608", "20200609", "20200610", "20200611", "20200612", "20200613", "20200614", "20200615", "20200616", "20200617", "20200618", "20200619", "20200620", "20200621", "20200622", "20200623", "20200624", "20200625" ], "rows": 169, "table": true, "tojson": true }, { "name": "map_sites", "title": "Spatial object corresponding to the sites of the data of the package HDSpatialScan", "object": "map_sites", "class": [ "SpatialPolygonsDataFrame" ], "fields": [], "table": false, "tojson": false }, { "name": "multi_data", "title": "Multivariate non-functional data", "object": "multi_data", "class": [ "matrix", "array" ], "fields": {}, "rows": 169, "table": true, "tojson": true } ], "_help": [ { "page": "HDSpatialScan-package", "title": "Multivariate and Functional Spatial Scan Statistics", "topics": [ "HDSpatialScan-package", "HDSpatialScan" ] }, { "page": "clusters", "title": "Creation of the matrix of potential clusters", "topics": [ "clusters" ] }, { "page": "DFFSS", "title": "DFFSS scan procedure", "topics": [ "DFFSS" ] }, { "page": "dfree", "title": "Index for the UG scan procedure", "topics": [ "dfree" ] }, { "page": "dfree_index_multi", "title": "Index for the MDFFSS scan procedure", "topics": [ "dfree_index_multi" ] }, { "page": "FinScan", "title": "Finalization of the scan procedures", "topics": [ "FinScan" ] }, { "page": "fmulti_data", "title": "Multivariate functional data", "topics": [ "fmulti_data" ] }, { "page": "funi_data", "title": "Univariate functional data", "topics": [ "funi_data" ] }, { "page": "InitScan", "title": "Initalization of the scan procedures by creating the matrix of potential clusters", "topics": [ "InitScan" ] }, { "page": "map_sites", "title": "Spatial object corresponding to the sites of the data of the package HDSpatialScan", "topics": [ "map_sites" ] }, { "page": "MDFFSS", "title": "MDFFSS scan procedure", "topics": [ "MDFFSS" ] }, { "page": "MG", "title": "MG scan procedure", "topics": [ "MG" ] }, { "page": "MNP", "title": "MNP scan procedure", "topics": [ "MNP" ] }, { "page": "MPFSS", "title": "MPFSS scan procedure", "topics": [ "MPFSS" ] }, { "page": "MRBFSS", "title": "MRBFSS scan procedure", "topics": [ "MRBFSS" ] }, { "page": "multi_data", "title": "Multivariate non-functional data", "topics": [ "multi_data" ] }, { "page": "multi_fWMW", "title": "Index for the NPFSS scan procedure (multivariate functional case)", "topics": [ "multi_fWMW" ] }, { "page": "multi_gaussian", "title": "Index for the MG scan procedure", "topics": [ "multi_gaussian" ] }, { "page": "multi_signs_matrix", "title": "List of matrix of signs (multivariate functional data)", "topics": [ "multi_signs_matrix" ] }, { "page": "multi_WMW", "title": "Index for the MNP scan procedure", "topics": [ "multi_WMW" ] }, { "page": "non_overlap", "title": "Return only the detected clusters with no overlapping in their order of detection", "topics": [ "non_overlap" ] }, { "page": "NPFSS", "title": "NPFSS scan procedure (univariate functional or multivariate functional)", "topics": [ "NPFSS" ] }, { "page": "permutate", "title": "Permutates the data", "topics": [ "permutate" ] }, { "page": "PFSS", "title": "PFSS scan procedure", "topics": [ "PFSS" ] }, { "page": "plot_map", "title": "Map of circular clusters", "topics": [ "plot_map" ] }, { "page": "plot_map2", "title": "Map of the clusters", "topics": [ "plot_map2" ] }, { "page": "plot_schema", "title": "Schema of the clusters", "topics": [ "plot_schema" ] }, { "page": "plot.ResScanOutput", "title": "Schema or map of the clusters", "topics": [ "plot.ResScanOutput" ] }, { "page": "plotCurves", "title": "Generic function to plot curves", "topics": [ "plotCurves" ] }, { "page": "plotCurves.ResScanOutputMultiFunct", "title": "Plots the curves in the clusters detected by the multivariate functional scan functions (MPFSS, NPFSS, MDFFSS or MRBFSS)", "topics": [ "plotCurves.ResScanOutputMultiFunct" ] }, { "page": "plotCurves.ResScanOutputUniFunct", "title": "Plots the curves in the clusters detected by the univariate functional scan functions (PFSS, NPFSS, DFFSS or URBFSS)", "topics": [ "plotCurves.ResScanOutputUniFunct" ] }, { "page": "plotSummary", "title": "Generic function to plot a summary", "topics": [ "plotSummary" ] }, { "page": "plotSummary.ResScanOutputMulti", "title": "Plots the mean or median spider chart of the clusters detected by a multivariate scan function (MG or MNP)", "topics": [ "plotSummary.ResScanOutputMulti" ] }, { "page": "plotSummary.ResScanOutputMultiFunct", "title": "Plots the mean or median curves in the clusters detected by a multivariate functional scan procedure (MPFSS, NPFSS, MDFFSS or MRBFSS)", "topics": [ "plotSummary.ResScanOutputMultiFunct" ] }, { "page": "plotSummary.ResScanOutputUniFunct", "title": "Plots the mean or median curves in the clusters detected by a univariate functional scan procedure (PFSS, NPFSS, DFFSS or URBFSS)", "topics": [ "plotSummary.ResScanOutputUniFunct" ] }, { "page": "pointwise_dfree", "title": "Index for the DFFSS scan procedure", "topics": [ "pointwise_dfree" ] }, { "page": "pointwise_wmw_multi", "title": "Index for the MRBFSS scan procedure", "topics": [ "pointwise_wmw_multi" ] }, { "page": "pointwise_wmw_uni", "title": "Index for the URBFSS scan procedure", "topics": [ "pointwise_wmw_uni" ] }, { "page": "post_filt_area", "title": "A posteriori filtering on the area", "topics": [ "post_filt_area" ] }, { "page": "post_filt_nb_sites", "title": "A posteriori filtering on the number of sites/individuals", "topics": [ "post_filt_nb_sites" ] }, { "page": "post_filt_radius", "title": "A posteriori filtering on the radius", "topics": [ "post_filt_radius" ] }, { "page": "print.ResScanOutput", "title": "Prints a result of a scan procedure", "topics": [ "print.ResScanOutput" ] }, { "page": "ResScanOutput", "title": "Constructor function for objects of the ResScanOutput class", "topics": [ "ResScanOutput" ] }, { "page": "ResScanOutputMulti", "title": "Constructor function for objects of the ResScanOutputMulti class", "topics": [ "ResScanOutputMulti" ] }, { "page": "ResScanOutputMultiFunct", "title": "Constructor function for objects of the ResScanOutputMultiFunct class", "topics": [ "ResScanOutputMultiFunct" ] }, { "page": "ResScanOutputUni", "title": "Constructor function for objects of the ResScanOutputUni class", "topics": [ "ResScanOutputUni" ] }, { "page": "ResScanOutputUniFunct", "title": "Constructor function for objects of the ResScanOutputUniFunct class", "topics": [ "ResScanOutputUniFunct" ] }, { "page": "SpatialScan", "title": "Spatial scan procedure", "topics": [ "SpatialScan" ] }, { "page": "summary.ResScanOutputMulti", "title": "Summary of the clusters obtained with a multivariate scan function (MG or MNP).", "topics": [ "summary.ResScanOutputMulti" ] }, { "page": "summary.ResScanOutputMultiFunct", "title": "Summary of the clusters obtained with a multivariate functional scan function (MPFSS, NPFSS, MDFFSS or MRBFSS).", "topics": [ "summary.ResScanOutputMultiFunct" ] }, { "page": "summary.ResScanOutputUni", "title": "Summary of the clusters obtained with a univariate scan function (UG or UNP).", "topics": [ "summary.ResScanOutputUni" ] }, { "page": "summary.ResScanOutputUniFunct", "title": "Summary of the clusters obtained with a univariate functional scan function (PFSS, NPFSS, DFFSS or URBFSS).", "topics": [ "summary.ResScanOutputUniFunct" ] }, { "page": "transform_data", "title": "Computation of the multivariate functional ranks", "topics": [ "transform_data" ] }, { "page": "UG", "title": "UG scan procedure", "topics": [ "UG" ] }, { "page": "uni_fWMW", "title": "Index for the NPFSS scan procedure (univariate functional case)", "topics": [ "uni_fWMW" ] }, { "page": "uni_signs_matrix", "title": "Computation of the matrix of signs", "topics": [ "uni_signs_matrix" ] }, { "page": "UNP", "title": "UNP scan procedure", "topics": [ "UNP" ] }, { "page": "URBFSS", "title": "URBFSS scan procedure", "topics": [ "URBFSS" ] }, { "page": "wmw_uni", "title": "Index for the UNP scan procedure", "topics": [ "wmw_uni" ] } ], "_rundeps": [ "abind", "base64enc", "bslib", "cachem", "class", "classInt", "cli", "clue", "cluster", "cpp11", "crosstalk", "DBI", "deldir", "digest", "dplyr", "DT", "e1071", "evaluate", "farver", "fastmap", "fBasics", "fmsb", "fontawesome", "fs", "generics", "ggplot2", "ggrepel", "glue", "gss", "gtable", "HDInterval", "highr", "htmltools", "htmlwidgets", "igraph", "isoband", "jquerylib", "jsonlite", "KernSmooth", "kknn", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "magrittr", "MASS", "Matrix", "matrixStats", "memoise", "mime", "modeest", "otel", "pbapply", "pillar", "pkgconfig", "plotrix", "polyclip", "promises", "proxy", "purrr", "R6", "rappdirs", "raster", "RColorBrewer", "Rcpp", "RcppArmadillo", "rlang", "rmarkdown", "rmutil", "rpart", "s2", "S7", "sass", "scales", "sf", "sp", "spatial", "SpatialNP", "spatstat.data", "spatstat.geom", "spatstat.univar", "spatstat.utils", "stable", "stabledist", "statip", "stringi", "stringr", "swfscMisc", "TeachingDemos", "terra", "tibble", "tidyr", "tidyselect", "timeDate", "timeSeries", "tinytex", "units", "utf8", "vctrs", "viridisLite", "withr", "wk", "xfun", "yaml" ], "_sysdeps": [ { "shlib": "liblapack", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_score": 1, "_indexed": false, "_nocasepkg": "hdspatialscan", "_universes": [ "cran" ], "_indexurl": "https://camillef-git.r-universe.dev/HDSpatialScan", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.5", "date": "2026-06-09T09:37:39.000Z", "distro": "noble", "arch": "aarch64", "commit": "7adf9363bc9e2fffcb36b9aa1c8e5f5a204a618c", "fileid": "31a02714b07c04f97dfd606ec040d2fa8ae3972b342280b7cb23e8b468de2019", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27197064478" }, { "r": "4.7.0", "os": "linux", "version": "1.0.5", "date": "2026-06-09T09:38:08.000Z", "distro": "noble", "arch": "x86_64", "commit": "7adf9363bc9e2fffcb36b9aa1c8e5f5a204a618c", "fileid": "e44cf659f9408ffa77da9430580d08ae98b1a9ce86fdeccddabdf836795e3c65", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27197064478" }, { "r": "4.6.0", "os": "linux", "version": "1.0.5", "date": "2026-06-09T09:37:48.000Z", "distro": "noble", "arch": "aarch64", "commit": "7adf9363bc9e2fffcb36b9aa1c8e5f5a204a618c", "fileid": "bce9108b7d2c2fb3e15517acf16ac9579b11d332efa8f332abaf462257893737", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27197064478" }, { "r": "4.6.0", "os": "linux", "version": "1.0.5", "date": "2026-06-09T09:37:49.000Z", "distro": "noble", "arch": "x86_64", "commit": "7adf9363bc9e2fffcb36b9aa1c8e5f5a204a618c", "fileid": "8fd71c26bbc7fa03661c0334e245bee4e7156d493e2036647e2b304067b3d008", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27197064478" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.5", "date": "2026-06-09T09:38:05.000Z", "arch": "emscripten", "commit": "7adf9363bc9e2fffcb36b9aa1c8e5f5a204a618c", "fileid": "6d7eeb21bdbba8f78310a2422b276693594f69d3b37cacaca0827be5e694054c", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/27197064478" } ] }