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  "Title": "Comprehensive and Easy to Use Quality Control of GWAS Results",
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  "Date": "2026-01-18",
  "Authors@R": "c(\nperson(given = \"Alireza\", family = \"Ani\", role = c(\"aut\", \"cre\"), email = \"a.ani@umcg.nl\"),\nperson(given = \"Peter J.\", family = \"van der Most\", role = \"aut\"),\nperson(given = \"Ahmad\", family = \"Vaez\", role = \"aut\"),\nperson(given = \"Ilja M.\", family = \"Nolte\", role = \"aut\"))",
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  "Description": "When evaluating the results of a genome-wide association\nstudy (GWAS), it is important to perform a quality control to\nensure that the results are valid, complete, correctly\nformatted, and, in case of meta-analysis, consistent with other\nstudies that have applied the same analysis. This package was\ndeveloped to facilitate and streamline this process and provide\nthe user with a comprehensive report.",
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    "demo_inspector",
    "get_config",
    "get_headerTranslation",
    "manhattan_plot",
    "result_inspector",
    "run_inspector",
    "setup_inspector",
    "system_check"
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    {
      "page": "compare_GWASs",
      "title": "Compare summary statistics of GWAS result files",
      "topics": [
        "compare_GWASs"
      ]
    },
    {
      "page": "demo_inspector",
      "title": "Runs an example QC",
      "topics": [
        "demo_inspector"
      ]
    },
    {
      "page": "get_config",
      "title": "Copies the template configuration file to the local machine",
      "topics": [
        "get_config"
      ]
    },
    {
      "page": "get_headerTranslation",
      "title": "Copies the template header translation table to the local machine",
      "topics": [
        "get_headerTranslation"
      ]
    },
    {
      "page": "GWASinspector",
      "title": "Comprehensive and Easy to Use Quality Control of GWAS Results",
      "topics": [
        "GWASinspector-package",
        "GWASinspector"
      ]
    },
    {
      "page": "Inspector-class",
      "title": "An S4 class to represent the methods and parameters for inspecting a list of GWAS study result files.",
      "topics": [
        "Inspector",
        "Inspector-class"
      ]
    },
    {
      "page": "manhattan_plot",
      "title": "Creates the Manhattan plot",
      "topics": [
        "manhattan_plot"
      ]
    },
    {
      "page": "result_inspector",
      "title": "Displays a brief report after running the QC pipeline",
      "topics": [
        "result_inspector"
      ]
    },
    {
      "page": "run_inspector",
      "title": "Runs the QC pipeline on a set of GWAS result files",
      "topics": [
        "run_inspector"
      ]
    },
    {
      "page": "setup_inspector",
      "title": "Importing a configuration file into R for setting the pipeline parameters",
      "topics": [
        "setup_inspector"
      ]
    },
    {
      "page": "Study-class",
      "title": "An S4 class to represent an inspected GWAS study result file.",
      "topics": [
        "Study",
        "Study-class"
      ]
    },
    {
      "page": "StudyList-class",
      "title": "An S4 class to represent a list of inspected GWAS study result files.",
      "topics": [
        "StudyList",
        "StudyList-class"
      ]
    },
    {
      "page": "system_check",
      "title": "Checks which required and optional packages are available",
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      ]
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      "title": "Introduction to GWASinspector",
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      "headings": [
        "Overview",
        "Installation",
        "Required files",
        "Allele reference panels",
        "The header-translation table",
        "Configuration file",
        "Step-by-step guide to run a QC",
        "Step 1: make sure the package is installed correctly",
        "Step 2: check R environment",
        "Step 3: download the standard allele-frequency reference datasets",
        "Step 4: get the header-translation table",
        "Step 5: get the configuration file",
        "Step 6: modify the parameters in the configuration file",
        "Step 7: run the QC function",
        "Test run"
      ],
      "created": "2019-08-02 08:20:08",
      "modified": "2026-01-29 08:30:10",
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