{
  "_id": "6abb866999f7aa8c6aa45701",
  "Package": "GENLIB",
  "Type": "Package",
  "Title": "Genealogical Data Analysis",
  "Version": "1.1.10",
  "Date": "2024-02-16",
  "Authors@R": "c( person(\"Louis\",\t\t\t \"Houde\",        role=\"aut\"),\nperson(\"Jean-Francois\",\t\"Lefebvre\",\trole=\"aut\", email=\"jf_lef@yahoo.ca\"),\nperson(\"Valery\",\t\t\"Roy-Lagace\",\trole=\"aut\"),\nperson(\"Sebastien\",\t\t\"Lemieux\",\trole=\"aut\"),\nperson(\"Michael J.\",\t\t\"Fromberger\",\trole=\"ctb\"),\nperson(\"Jarno\",\t\t\"van der Kolk\",\trole=\"ctb\"),\nperson(\"Mohan\",   \"Rakesh\", role=\"ctb\"),\nperson(\"Marie-Helene\",\t\"Roy-Gagnon\",\trole=\"cre\", email=\"r.genlib@gmail.com\"))",
  "Description": "Genealogical data analysis including descriptive\nstatistics (e.g., kinship and inbreeding coefficients) and\ngene-dropping simulations. See: \"GENLIB: an R package for the\nanalysis of genealogical data\" Gauvin et al. (2015)\n<doi:10.1186/s12859-015-0581-5>.",
  "License": "GPL (>= 2)",
  "LazyLoad": "yes",
  "NeedsCompilation": "yes",
  "Author": "Louis Houde [aut], Jean-Francois Lefebvre [aut], Valery\nRoy-Lagace [aut], Sebastien Lemieux [aut], Michael J.\nFromberger [ctb], Jarno van der Kolk [ctb], Mohan Rakesh [ctb],\nMarie-Helene Roy-Gagnon [cre]",
  "Maintainer": "Marie-Helene Roy-Gagnon <r.genlib@gmail.com>",
  "RoxygenNote": "7.1.2",
  "Packaged": {
    "Date": "2026-09-29 09:29:43 UTC",
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  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2024-02-20 02:28:54 UTC",
  "RemoteUrl": "https://github.com/cran/GENLIB",
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  "_expires": "2027-01-07T09:35:35.000Z",
  "_created": "2026-09-29T09:29:43.000Z",
  "_published": "2026-09-29T09:35:37.277Z",
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    "gen.climbPAR",
    "gen.completeness",
    "gen.completenessVar",
    "gen.depth",
    "gen.f",
    "gen.fCI",
    "gen.find.Min.Distance.MRCA",
    "gen.findDistance",
    "gen.findFounders",
    "gen.findMRCA",
    "gen.founder",
    "gen.gc",
    "gen.genealogy",
    "gen.genout",
    "gen.getAncestorsPAR",
    "gen.getFoundersPAR",
    "gen.graph",
    "gen.half.founder",
    "gen.implex",
    "gen.implexVar",
    "gen.lineages",
    "gen.max",
    "gen.mean",
    "gen.meangendepth",
    "gen.meangendepthVar",
    "gen.min",
    "gen.nochildren",
    "gen.noind",
    "gen.nomen",
    "gen.nowomen",
    "gen.occ",
    "gen.parent",
    "gen.phi",
    "gen.phiCI",
    "gen.phiMean",
    "gen.phiOver",
    "gen.pro",
    "gen.rec",
    "gen.sibship",
    "gen.simuHaplo",
    "gen.simuHaplo_convert",
    "gen.simuHaplo_IBD_compare",
    "gen.simuHaplo_traceback",
    "gen.simuProb",
    "gen.simuSample",
    "gen.simuSampleFreq",
    "gen.simuSet"
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        "sex"
      ],
      "rows": 41523,
      "table": true,
      "tojson": true
    },
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      "name": "geneaJi",
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      ],
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        "father",
        "mother",
        "sex"
      ],
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      "table": true,
      "tojson": true
    },
    {
      "name": "pop140",
      "title": "Population of origin of the 140 Quebec samples",
      "object": "pop140",
      "file": "pop140.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ind",
        "pop"
      ],
      "rows": 140,
      "table": true,
      "tojson": true
    }
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  "_help": [
    {
      "page": "GLmultiVector-class",
      "title": "Classes '\"GLmultiVector\"' '\"GLmultiArray4\"' '\"GLmultiMatrix\"' '\"GLmultiNumber\"'",
      "topics": [
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        "depth,GLmultiMatrix-method",
        "depth,GLmultiNumber-method",
        "depth,GLmultiVector-method",
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      "page": "GLCGMatrixGroupSingle-class",
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        "Dim,GLmultiFGroupSingle-method",
        "Dim,GLmultiPhiGroup-method",
        "Dim,GLmultiPhiGroupSingle-method",
        "GLCGMatrixGroupSingle-class",
        "GLmultiFGroup-class",
        "GLmultiFGroupSingle-class",
        "GLmultiPhiGroup-class",
        "GLmultiPhiGroupSingle-class",
        "[,GLCGMatrixGroupSingle,ANY,ANY,ANY-method",
        "[,GLmultiFGroup,ANY,ANY,ANY-method",
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        "[<-,GLmultiPhiGroupSingle,ANY,ANY,ANY-method"
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      "title": "Genealogy subset",
      "topics": [
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    },
    {
      "page": "gen.children",
      "title": "Get id numbers of children",
      "topics": [
        "gen.children"
      ]
    },
    {
      "page": "gen.climbPAR",
      "title": "Internal function used by gen.findMRCA",
      "topics": [
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      "title": "Completeness",
      "topics": [
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      "title": "Variance of completeness index",
      "topics": [
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      "page": "gen.depth",
      "title": "Genealogy depth",
      "topics": [
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      "page": "gen.f",
      "title": "Inbreeding coefficient",
      "topics": [
        "gen.f"
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    {
      "page": "gen.fCI",
      "title": "Average inbreeding coefficient confidence interval",
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      "title": "Finds the minimum distances between pairs of individuals given a set of ancestors.",
      "topics": [
        "gen.find.Min.Distance.MRCA"
      ]
    },
    {
      "page": "gen.findDistance",
      "title": "Minimum genetic distance between two individuals",
      "topics": [
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      ]
    },
    {
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      "title": "Find common founder ancestors",
      "topics": [
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    },
    {
      "page": "gen.findMRCA",
      "title": "Finding most recent common ancestors, MRCAs",
      "topics": [
        "gen.findMRCA"
      ]
    },
    {
      "page": "gen.founder",
      "title": "Get founder id numbers",
      "topics": [
        "gen.founder"
      ]
    },
    {
      "page": "gen.gc",
      "title": "Genetic contribution of ancestors",
      "topics": [
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      ]
    },
    {
      "page": "gen.genealogy",
      "title": "Create object of class GLgen",
      "topics": [
        "gen.genealogy"
      ]
    },
    {
      "page": "gen.genout",
      "title": "Create pedigree data",
      "topics": [
        "gen.genout"
      ]
    },
    {
      "page": "gen.getAncestorsPAR",
      "title": "Internal function used by gen.findMRCA",
      "topics": [
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      ]
    },
    {
      "page": "gen.getFoundersPAR",
      "title": "Internal function used by gen.findFounders",
      "topics": [
        "gen.getFoundersPAR"
      ]
    },
    {
      "page": "gen.graph",
      "title": "Pedigree graphical tool",
      "topics": [
        "gen.graph"
      ]
    },
    {
      "page": "gen.half.founder",
      "title": "Get half-founder id numbers",
      "topics": [
        "gen.half.founder"
      ]
    },
    {
      "page": "gen.implex",
      "title": "Genealogical implex",
      "topics": [
        "gen.implex"
      ]
    },
    {
      "page": "gen.implexVar",
      "title": "Variance of genealogical implex",
      "topics": [
        "gen.implexVar"
      ]
    },
    {
      "page": "gen.lineages",
      "title": "Create object of class GLgen for maternal or paternal lineages",
      "topics": [
        "gen.lineages"
      ]
    },
    {
      "page": "gen.max",
      "title": "Maximum number of generations",
      "topics": [
        "gen.max"
      ]
    },
    {
      "page": "gen.mean",
      "title": "Mean number of generations",
      "topics": [
        "gen.mean"
      ]
    },
    {
      "page": "gen.meangendepth",
      "title": "Expected Genealogical Depth",
      "topics": [
        "gen.meangendepth"
      ]
    },
    {
      "page": "gen.meangendepthVar",
      "title": "Variance of genealogical depth",
      "topics": [
        "gen.meangendepthVar"
      ]
    },
    {
      "page": "gen.min",
      "title": "Minimum number of generations",
      "topics": [
        "gen.min"
      ]
    },
    {
      "page": "gen.nochildren",
      "title": "Number of children",
      "topics": [
        "gen.nochildren"
      ]
    },
    {
      "page": "gen.noind",
      "title": "Number of individuals",
      "topics": [
        "gen.noind"
      ]
    },
    {
      "page": "gen.nomen",
      "title": "Number of men",
      "topics": [
        "gen.nomen"
      ]
    },
    {
      "page": "gen.nowomen",
      "title": "Number of women",
      "topics": [
        "gen.nowomen"
      ]
    },
    {
      "page": "gen.occ",
      "title": "Ancestor occurences",
      "topics": [
        "gen.occ"
      ]
    },
    {
      "page": "gen.parent",
      "title": "Get id numbers of parents",
      "topics": [
        "gen.parent"
      ]
    },
    {
      "page": "gen.phi",
      "title": "Kinship coefficient",
      "topics": [
        "gen.phi"
      ]
    },
    {
      "page": "gen.phiCI",
      "title": "Average kinship confidence interval",
      "topics": [
        "gen.phiCI"
      ]
    },
    {
      "page": "gen.phiMean",
      "title": "Average kinship",
      "topics": [
        "gen.phiMean"
      ]
    },
    {
      "page": "gen.phiOver",
      "title": "Kinship above threshold",
      "topics": [
        "gen.phiOver"
      ]
    },
    {
      "page": "gen.pro",
      "title": "Get proband id numbers",
      "topics": [
        "gen.pro"
      ]
    },
    {
      "page": "gen.rec",
      "title": "Ancestors coverage",
      "topics": [
        "gen.rec"
      ]
    },
    {
      "page": "gen.sibship",
      "title": "Get id numbers of siblings",
      "topics": [
        "gen.sibship"
      ]
    },
    {
      "page": "gen.simuHaplo",
      "title": "Gene dropping simulations - haplotypes",
      "topics": [
        "gen.simuHaplo"
      ]
    },
    {
      "page": "gen.simuHaplo_convert",
      "title": "Convert proband simulation results into sequence data given founder haplotypes",
      "topics": [
        "gen.simuHaplo_convert"
      ]
    },
    {
      "page": "gen.simuHaplo_IBD_compare",
      "title": "Compare proband haplotypes for IBD sharing",
      "topics": [
        "gen.simuHaplo_IBD_compare"
      ]
    },
    {
      "page": "gen.simuHaplo_traceback",
      "title": "Trace inheritance path for results from gene dropping simulation",
      "topics": [
        "gen.simuHaplo_traceback"
      ]
    },
    {
      "page": "gen.simuProb",
      "title": "Gene dropping simulations - Probabilities",
      "topics": [
        "gen.simuProb"
      ]
    },
    {
      "page": "gen.simuSample",
      "title": "Gene dropping simulations - Sample",
      "topics": [
        "gen.simuSample"
      ]
    },
    {
      "page": "gen.simuSampleFreq",
      "title": "Gene dropping simulations - Frequencies",
      "topics": [
        "gen.simuSampleFreq"
      ]
    },
    {
      "page": "gen.simuSet",
      "title": "Gene dropping simulations with specified transmission probabilities",
      "topics": [
        "gen.simuSet"
      ]
    },
    {
      "page": "genea140",
      "title": "Genealogical information for 140 individuals from the Quebec Reference Sample",
      "topics": [
        "genea140"
      ]
    },
    {
      "page": "geneaJi",
      "title": "Highly inbred pedigree",
      "topics": [
        "geneaJi"
      ]
    },
    {
      "page": "GLgen-class",
      "title": "Class '\"GLgen\"'",
      "topics": [
        "depth,GLgen-method",
        "GLgen-class",
        "initialize,GLgen-method",
        "length,GLgen-method"
      ]
    },
    {
      "page": "GLgroupe-class",
      "title": "Class '\"GLgroup\"'",
      "topics": [
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        "initialize,GLgroup-method",
        "[,GLgroup,ANY,ANY,ANY-method"
      ]
    },
    {
      "page": "GLmultiList-class",
      "title": "Class '\"GLmultiList\"'",
      "topics": [
        "GLmultiList-class"
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    },
    {
      "page": "pop140",
      "title": "Population of origin of the 140 Quebec samples",
      "topics": [
        "pop140"
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