{
  "_id": "6a1021fbacfb0bcc41c8c922",
  "Package": "GENLIB",
  "Type": "Package",
  "Title": "Genealogical Data Analysis",
  "Version": "1.1.10",
  "Date": "2024-02-16",
  "Authors@R": "c( person(\"Louis\",\t\t\t \"Houde\",        role=\"aut\"),\nperson(\"Jean-Francois\",\t\"Lefebvre\",\trole=\"aut\", email=\"jf_lef@yahoo.ca\"),\nperson(\"Valery\",\t\t\"Roy-Lagace\",\trole=\"aut\"),\nperson(\"Sebastien\",\t\t\"Lemieux\",\trole=\"aut\"),\nperson(\"Michael J.\",\t\t\"Fromberger\",\trole=\"ctb\"),\nperson(\"Jarno\",\t\t\"van der Kolk\",\trole=\"ctb\"),\nperson(\"Mohan\",   \"Rakesh\", role=\"ctb\"),\nperson(\"Marie-Helene\",\t\"Roy-Gagnon\",\trole=\"cre\", email=\"r.genlib@gmail.com\"))",
  "Description": "Genealogical data analysis including descriptive\nstatistics (e.g., kinship and inbreeding coefficients) and\ngene-dropping simulations. See: \"GENLIB: an R package for the\nanalysis of genealogical data\" Gauvin et al. (2015)\n<doi:10.1186/s12859-015-0581-5>.",
  "License": "GPL (>= 2)",
  "LazyLoad": "yes",
  "NeedsCompilation": "yes",
  "Author": "Louis Houde [aut], Jean-Francois Lefebvre [aut], Valery\nRoy-Lagace [aut], Sebastien Lemieux [aut], Michael J.\nFromberger [ctb], Jarno van der Kolk [ctb], Mohan Rakesh [ctb],\nMarie-Helene Roy-Gagnon [cre]",
  "Maintainer": "Marie-Helene Roy-Gagnon <r.genlib@gmail.com>",
  "RoxygenNote": "7.1.2",
  "Packaged": {
    "Date": "2026-05-22 09:25:12 UTC",
    "User": "root"
  },
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2024-02-20 02:28:54 UTC",
  "RemoteUrl": "https://github.com/cran/GENLIB",
  "RemoteRef": "HEAD",
  "RemoteSha": "84a2a9919feb864f3d30a83131a9efa74d14812e",
  "MD5sum": "7a3c9dce4af77c4780b9475a4d50e82a",
  "_user": "cran",
  "_type": "src",
  "_file": "GENLIB_1.1.10.tar.gz",
  "_fileid": "e234846e35062e1122cdfac2c899fc25396bd23c094f3f264ebc368831e2addd",
  "_filesize": 553333,
  "_sha256": "e234846e35062e1122cdfac2c899fc25396bd23c094f3f264ebc368831e2addd",
  "_created": "2026-05-22T09:25:12.000Z",
  "_published": "2026-05-22T09:29:31.316Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77352709248,
      "time": 193,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7157287547"
    },
    {
      "job": 77352709347,
      "time": 185,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7157285392"
    },
    {
      "job": 77352709249,
      "time": 184,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7157284794"
    },
    {
      "job": 77352709238,
      "time": 165,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7157278913"
    },
    {
      "job": 77352207421,
      "time": 194,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7157225407"
    },
    {
      "job": 77352709221,
      "time": 148,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7157273104"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/26279563736",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/GENLIB",
  "_commit": {
    "id": "84a2a9919feb864f3d30a83131a9efa74d14812e",
    "author": "Marie-Helene Roy-Gagnon <r.genlib@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.1.10\n",
    "time": 1708396134
  },
  "_maintainer": {
    "name": "Marie-Helene Roy-Gagnon",
    "email": "r.genlib@gmail.com"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.1.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "version": ">= 0.9.10",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "BH",
      "role": "LinkingTo"
    },
    {
      "package": "kinship2",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "bootstrap",
      "role": "Imports"
    },
    {
      "package": "Matrix",
      "role": "Imports"
    },
    {
      "package": "lattice",
      "role": "Imports"
    },
    {
      "package": "quadprog",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 1,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "mroygagn",
      "count": 14,
      "uuid": 68291341
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 334,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/GENLIB"
  },
  "_mentions": 2,
  "_searchresults": 53,
  "_topics": [
    "cpp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/GENLIB.html",
    "manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2014-09-11"
    },
    {
      "version": "1.0.1",
      "date": "2014-09-26"
    },
    {
      "version": "1.0.2",
      "date": "2014-12-04"
    },
    {
      "version": "1.0.3",
      "date": "2015-03-20"
    },
    {
      "version": "1.0.4",
      "date": "2015-04-21"
    },
    {
      "version": "1.0.6",
      "date": "2018-05-30"
    },
    {
      "version": "1.0.7",
      "date": "2020-02-28"
    },
    {
      "version": "1.0.8",
      "date": "2020-04-18"
    },
    {
      "version": "1.0.9",
      "date": "2020-07-19"
    },
    {
      "version": "1.1.5",
      "date": "2021-09-16"
    },
    {
      "version": "1.1.6",
      "date": "2022-08-11"
    },
    {
      "version": "1.1.7",
      "date": "2022-11-16"
    },
    {
      "version": "1.1.8",
      "date": "2022-12-13"
    },
    {
      "version": "1.1.9",
      "date": "2023-01-17"
    },
    {
      "version": "1.1.10",
      "date": "2024-02-19"
    }
  ],
  "_exports": [
    "gen.branching",
    "gen.children",
    "gen.climbPAR",
    "gen.completeness",
    "gen.completenessVar",
    "gen.depth",
    "gen.f",
    "gen.fCI",
    "gen.find.Min.Distance.MRCA",
    "gen.findDistance",
    "gen.findFounders",
    "gen.findMRCA",
    "gen.founder",
    "gen.gc",
    "gen.genealogy",
    "gen.genout",
    "gen.getAncestorsPAR",
    "gen.getFoundersPAR",
    "gen.graph",
    "gen.half.founder",
    "gen.implex",
    "gen.implexVar",
    "gen.lineages",
    "gen.max",
    "gen.mean",
    "gen.meangendepth",
    "gen.meangendepthVar",
    "gen.min",
    "gen.nochildren",
    "gen.noind",
    "gen.nomen",
    "gen.nowomen",
    "gen.occ",
    "gen.parent",
    "gen.phi",
    "gen.phiCI",
    "gen.phiMean",
    "gen.phiOver",
    "gen.pro",
    "gen.rec",
    "gen.sibship",
    "gen.simuHaplo",
    "gen.simuHaplo_convert",
    "gen.simuHaplo_IBD_compare",
    "gen.simuHaplo_traceback",
    "gen.simuProb",
    "gen.simuSample",
    "gen.simuSampleFreq",
    "gen.simuSet"
  ],
  "_datasets": [
    {
      "name": "genea140",
      "title": "Genealogical information for 140 individuals from the Quebec Reference Sample",
      "object": "genea140",
      "file": "genea140.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ind",
        "father",
        "mother",
        "sex"
      ],
      "rows": 41523,
      "table": true,
      "tojson": true
    },
    {
      "name": "geneaJi",
      "title": "Highly inbred pedigree",
      "object": "geneaJi",
      "file": "geneaJi.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ind",
        "father",
        "mother",
        "sex"
      ],
      "rows": 29,
      "table": true,
      "tojson": true
    },
    {
      "name": "pop140",
      "title": "Population of origin of the 140 Quebec samples",
      "object": "pop140",
      "file": "pop140.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "ind",
        "pop"
      ],
      "rows": 140,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "GLmultiVector-class",
      "title": "Classes '\"GLmultiVector\"' '\"GLmultiArray4\"' '\"GLmultiMatrix\"' '\"GLmultiNumber\"'",
      "topics": [
        "depth,GLmultiArray4-method",
        "depth,GLmultiMatrix-method",
        "depth,GLmultiNumber-method",
        "depth,GLmultiVector-method",
        "Dim,GLmultiArray4-method",
        "Dim,GLmultiMatrix-method",
        "Dim,GLmultiNumber-method",
        "Dim,GLmultiVector-method",
        "GLmultiArray4-class",
        "GLmultiMatrix-class",
        "GLmultiNumber-class",
        "GLmultiVector-class",
        "[,GLmultiArray4,ANY,ANY,ANY-method",
        "[,GLmultiMatrix,ANY,ANY,ANY-method",
        "[,GLmultiNumber,ANY,ANY,ANY-method",
        "[,GLmultiVector,ANY,ANY,ANY-method",
        "[<-,GLmultiArray4,ANY,ANY,ANY-method",
        "[<-,GLmultiMatrix,ANY,ANY,ANY-method",
        "[<-,GLmultiNumber,ANY,ANY,ANY-method",
        "[<-,GLmultiVector,ANY,ANY,ANY-method"
      ]
    },
    {
      "page": "GLCGMatrixGroupSingle-class",
      "title": "Classes '\"GLmultiPhiGroup\"' '\"GLmultiPhiGroupSingle\"' '\"GLmultiFGroup\"' '\"GLmultiFGroupSingle\"' '\"GLCGMatrixGroupSingle\"'",
      "topics": [
        "Dim,GLmultiFGroup-method",
        "Dim,GLmultiFGroupSingle-method",
        "Dim,GLmultiPhiGroup-method",
        "Dim,GLmultiPhiGroupSingle-method",
        "GLCGMatrixGroupSingle-class",
        "GLmultiFGroup-class",
        "GLmultiFGroupSingle-class",
        "GLmultiPhiGroup-class",
        "GLmultiPhiGroupSingle-class",
        "[,GLCGMatrixGroupSingle,ANY,ANY,ANY-method",
        "[,GLmultiFGroup,ANY,ANY,ANY-method",
        "[,GLmultiFGroupSingle,ANY,ANY,ANY-method",
        "[,GLmultiPhiGroup,ANY,ANY,ANY-method",
        "[,GLmultiPhiGroupSingle,ANY,ANY,ANY-method",
        "[<-,GLCGMatrixGroupSingle,ANY,ANY,ANY-method",
        "[<-,GLmultiFGroup,ANY,ANY,ANY-method",
        "[<-,GLmultiFGroupSingle,ANY,ANY,ANY-method",
        "[<-,GLmultiPhiGroup,ANY,ANY,ANY-method",
        "[<-,GLmultiPhiGroupSingle,ANY,ANY,ANY-method"
      ]
    },
    {
      "page": "gen.branching",
      "title": "Genealogy subset",
      "topics": [
        "gen.branching"
      ]
    },
    {
      "page": "gen.children",
      "title": "Get id numbers of children",
      "topics": [
        "gen.children"
      ]
    },
    {
      "page": "gen.climbPAR",
      "title": "Internal function used by gen.findMRCA",
      "topics": [
        "gen.climbPAR"
      ]
    },
    {
      "page": "gen.completeness",
      "title": "Completeness",
      "topics": [
        "gen.completeness"
      ]
    },
    {
      "page": "gen.completenessVar",
      "title": "Variance of completeness index",
      "topics": [
        "gen.completenessVar"
      ]
    },
    {
      "page": "gen.depth",
      "title": "Genealogy depth",
      "topics": [
        "gen.depth"
      ]
    },
    {
      "page": "gen.f",
      "title": "Inbreeding coefficient",
      "topics": [
        "gen.f"
      ]
    },
    {
      "page": "gen.fCI",
      "title": "Average inbreeding coefficient confidence interval",
      "topics": [
        "gen.fCI"
      ]
    },
    {
      "page": "gen.find.Min.Distance.MRCA",
      "title": "Finds the minimum distances between pairs of individuals given a set of ancestors.",
      "topics": [
        "gen.find.Min.Distance.MRCA"
      ]
    },
    {
      "page": "gen.findDistance",
      "title": "Minimum genetic distance between two individuals",
      "topics": [
        "gen.findDistance"
      ]
    },
    {
      "page": "gen.findFounders",
      "title": "Find common founder ancestors",
      "topics": [
        "gen.findFounders"
      ]
    },
    {
      "page": "gen.findMRCA",
      "title": "Finding most recent common ancestors, MRCAs",
      "topics": [
        "gen.findMRCA"
      ]
    },
    {
      "page": "gen.founder",
      "title": "Get founder id numbers",
      "topics": [
        "gen.founder"
      ]
    },
    {
      "page": "gen.gc",
      "title": "Genetic contribution of ancestors",
      "topics": [
        "gen.gc"
      ]
    },
    {
      "page": "gen.genealogy",
      "title": "Create object of class GLgen",
      "topics": [
        "gen.genealogy"
      ]
    },
    {
      "page": "gen.genout",
      "title": "Create pedigree data",
      "topics": [
        "gen.genout"
      ]
    },
    {
      "page": "gen.getAncestorsPAR",
      "title": "Internal function used by gen.findMRCA",
      "topics": [
        "gen.getAncestorsPAR"
      ]
    },
    {
      "page": "gen.getFoundersPAR",
      "title": "Internal function used by gen.findFounders",
      "topics": [
        "gen.getFoundersPAR"
      ]
    },
    {
      "page": "gen.graph",
      "title": "Pedigree graphical tool",
      "topics": [
        "gen.graph"
      ]
    },
    {
      "page": "gen.half.founder",
      "title": "Get half-founder id numbers",
      "topics": [
        "gen.half.founder"
      ]
    },
    {
      "page": "gen.implex",
      "title": "Genealogical implex",
      "topics": [
        "gen.implex"
      ]
    },
    {
      "page": "gen.implexVar",
      "title": "Variance of genealogical implex",
      "topics": [
        "gen.implexVar"
      ]
    },
    {
      "page": "gen.lineages",
      "title": "Create object of class GLgen for maternal or paternal lineages",
      "topics": [
        "gen.lineages"
      ]
    },
    {
      "page": "gen.max",
      "title": "Maximum number of generations",
      "topics": [
        "gen.max"
      ]
    },
    {
      "page": "gen.mean",
      "title": "Mean number of generations",
      "topics": [
        "gen.mean"
      ]
    },
    {
      "page": "gen.meangendepth",
      "title": "Expected Genealogical Depth",
      "topics": [
        "gen.meangendepth"
      ]
    },
    {
      "page": "gen.meangendepthVar",
      "title": "Variance of genealogical depth",
      "topics": [
        "gen.meangendepthVar"
      ]
    },
    {
      "page": "gen.min",
      "title": "Minimum number of generations",
      "topics": [
        "gen.min"
      ]
    },
    {
      "page": "gen.nochildren",
      "title": "Number of children",
      "topics": [
        "gen.nochildren"
      ]
    },
    {
      "page": "gen.noind",
      "title": "Number of individuals",
      "topics": [
        "gen.noind"
      ]
    },
    {
      "page": "gen.nomen",
      "title": "Number of men",
      "topics": [
        "gen.nomen"
      ]
    },
    {
      "page": "gen.nowomen",
      "title": "Number of women",
      "topics": [
        "gen.nowomen"
      ]
    },
    {
      "page": "gen.occ",
      "title": "Ancestor occurences",
      "topics": [
        "gen.occ"
      ]
    },
    {
      "page": "gen.parent",
      "title": "Get id numbers of parents",
      "topics": [
        "gen.parent"
      ]
    },
    {
      "page": "gen.phi",
      "title": "Kinship coefficient",
      "topics": [
        "gen.phi"
      ]
    },
    {
      "page": "gen.phiCI",
      "title": "Average kinship confidence interval",
      "topics": [
        "gen.phiCI"
      ]
    },
    {
      "page": "gen.phiMean",
      "title": "Average kinship",
      "topics": [
        "gen.phiMean"
      ]
    },
    {
      "page": "gen.phiOver",
      "title": "Kinship above threshold",
      "topics": [
        "gen.phiOver"
      ]
    },
    {
      "page": "gen.pro",
      "title": "Get proband id numbers",
      "topics": [
        "gen.pro"
      ]
    },
    {
      "page": "gen.rec",
      "title": "Ancestors coverage",
      "topics": [
        "gen.rec"
      ]
    },
    {
      "page": "gen.sibship",
      "title": "Get id numbers of siblings",
      "topics": [
        "gen.sibship"
      ]
    },
    {
      "page": "gen.simuHaplo",
      "title": "Gene dropping simulations - haplotypes",
      "topics": [
        "gen.simuHaplo"
      ]
    },
    {
      "page": "gen.simuHaplo_convert",
      "title": "Convert proband simulation results into sequence data given founder haplotypes",
      "topics": [
        "gen.simuHaplo_convert"
      ]
    },
    {
      "page": "gen.simuHaplo_IBD_compare",
      "title": "Compare proband haplotypes for IBD sharing",
      "topics": [
        "gen.simuHaplo_IBD_compare"
      ]
    },
    {
      "page": "gen.simuHaplo_traceback",
      "title": "Trace inheritance path for results from gene dropping simulation",
      "topics": [
        "gen.simuHaplo_traceback"
      ]
    },
    {
      "page": "gen.simuProb",
      "title": "Gene dropping simulations - Probabilities",
      "topics": [
        "gen.simuProb"
      ]
    },
    {
      "page": "gen.simuSample",
      "title": "Gene dropping simulations - Sample",
      "topics": [
        "gen.simuSample"
      ]
    },
    {
      "page": "gen.simuSampleFreq",
      "title": "Gene dropping simulations - Frequencies",
      "topics": [
        "gen.simuSampleFreq"
      ]
    },
    {
      "page": "gen.simuSet",
      "title": "Gene dropping simulations with specified transmission probabilities",
      "topics": [
        "gen.simuSet"
      ]
    },
    {
      "page": "genea140",
      "title": "Genealogical information for 140 individuals from the Quebec Reference Sample",
      "topics": [
        "genea140"
      ]
    },
    {
      "page": "geneaJi",
      "title": "Highly inbred pedigree",
      "topics": [
        "geneaJi"
      ]
    },
    {
      "page": "GLgen-class",
      "title": "Class '\"GLgen\"'",
      "topics": [
        "depth,GLgen-method",
        "GLgen-class",
        "initialize,GLgen-method",
        "length,GLgen-method"
      ]
    },
    {
      "page": "GLgroupe-class",
      "title": "Class '\"GLgroup\"'",
      "topics": [
        "GLgroup-class",
        "initialize,GLgroup-method",
        "[,GLgroup,ANY,ANY,ANY-method"
      ]
    },
    {
      "page": "GLmultiList-class",
      "title": "Class '\"GLmultiList\"'",
      "topics": [
        "GLmultiList-class"
      ]
    },
    {
      "page": "pop140",
      "title": "Population of origin of the 140 Quebec samples",
      "topics": [
        "pop140"
      ]
    }
  ],
  "_rundeps": [
    "BH",
    "bootstrap",
    "codetools",
    "doParallel",
    "evaluate",
    "foreach",
    "highr",
    "iterators",
    "kinship2",
    "knitr",
    "lattice",
    "Matrix",
    "quadprog",
    "Rcpp",
    "xfun",
    "yaml"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 2.5024271199844326,
  "_indexed": true,
  "_nocasepkg": "genlib",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.10",
      "date": "2026-05-22T09:28:03.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "84a2a9919feb864f3d30a83131a9efa74d14812e",
      "fileid": "9b9fe348675562eff807e2f715b8ad82f5b6fde86f321bbb1d084471fcd57c2f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26279563736"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.10",
      "date": "2026-05-22T09:27:46.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "84a2a9919feb864f3d30a83131a9efa74d14812e",
      "fileid": "30c82479178a06f13ac730e003f20e365ec69fc1986d804a82dbe16f0cc6143e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26279563736"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.10",
      "date": "2026-05-22T09:27:51.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "84a2a9919feb864f3d30a83131a9efa74d14812e",
      "fileid": "d3c671df1fdfcd1f667681c2c1034169ebcd4b2142242b40655d9525d68ef56e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26279563736"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.10",
      "date": "2026-05-22T09:27:29.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "84a2a9919feb864f3d30a83131a9efa74d14812e",
      "fileid": "43c6404d318107ca237c8ceb253a25f41444f1ef7965253ea5c4bf67038fa471",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26279563736"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.10",
      "date": "2026-05-22T09:27:58.000Z",
      "arch": "emscripten",
      "commit": "84a2a9919feb864f3d30a83131a9efa74d14812e",
      "fileid": "a65764324eafa53fbf07a589ce35b7fe3eeabc917f101273dbed4da333480bcf",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26279563736"
    }
  ]
}