{ "_id": "6ae24bb1327abcdf8686559c", "Package": "Familia", "Title": "'shiny' Application for Population Structure and Ancestry\nAssessments", "Version": "2.2.0", "Authors@R": "c(\nperson(\"Josue\", \"Chinchilla-Vargas\",\nrole = c(\"aut\",\"cre\"),\nemail = \"josue.chinchilla@ufl.edu\"),\nperson(c(\"Alexander\", \"M.\"), \"Sandercock\",\nrole = \"aut\"),\nperson(\"Breeding Insight Team\",\nrole = \"aut\"))", "Description": "Provides a 'shiny' web application developed by the\nBreeding Insight team to support pedigree validation and\nancestry assessment of plant and animal populations. The app\nintegrates Mendelian error analysis, parentage assignment and\ngenetic composition/ancestry methods to help researchers\nevaluate genomic relationships through an accessible, web-based\ninterface without requiring command-line tools. Pedigree\nvalidation, Mendelian error analysis and parentage assignment\nbuild on the 'BIGpopA' package\n() and support\ndiploid and polyploid data. Genotypes can be uploaded as dosage\ntables, VCF files, or 'PLINK' .ped files. Ancestry estimation\nuses the sparse non-negative matrix factorization method of\nFrichot et al. (2014) as\nimplemented in the 'LEA' package by Frichot and Francois (2015)\n. Line and breed composition are\nestimated using the breed composition regression method of\nFunkhouser et al. (2017) , extended\nto polyploid species by Sandercock et al. (2025)\n.", "License": "Apache License (>= 2)", "URL": "https://github.com/Breeding-Insight/Familia", "BugReports": "https://github.com/Breeding-Insight/Familia/issues", "Encoding": "UTF-8", "biocViews": "", "VignetteBuilder": "knitr", "Language": "en-US", "Config/roxygen2/version": "8.1.1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-28 19:16:27 UTC", "User": "root" }, "Author": "Josue Chinchilla-Vargas [aut, cre], Alexander M. 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