{ "_id": "6a34fccd3efcd9bda43d5308", "Package": "FIRM", "Type": "Package", "Title": "Flexible Integration of Single-Cell RNA-Seq Data", "Version": "0.1.2", "Authors@R": "c(person(given = \"Jingsi\", family = \"Ming\", email = \"jsming@fem.ecnu.edu.cn\",\nrole = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(\"R package development and method implementation\",\n\"ORCID: 0000-0001-7059-4156\")),\nperson(given = \"Shuzhen\", family = \"Ding\", email = \"dszspur@xju.edu.cn\",\nrole = c(\"ctb\"), comment = \"R package development and maintenance\"),\nperson(given = \"Gad\", family = \"Abraham\", role = c(\"ctb\", \"cph\"),\ncomment = \"Original 'flashpca' 'C++' code for fast randomized PCA\"),\nperson(given = \"Yixuan\", family = \"Qiu\", role = c(\"ctb\", \"cph\"),\ncomment = \"'Spectra' library for large-scale eigenvalue and SVD computation\"),\nperson(given = \"Anna\", family = \"Araslanova\", role = c(\"ctb\", \"cph\"),\ncomment = \"Author of 'LOBPCGSolver.h' in 'Spectra'\"),\nperson(given = \"Felipe\", family = \"Zapata\", role = c(\"ctb\", \"cph\"),\ncomment = \"Author of 'DavidsonSymEigsSolver.h' and 'Orthogonalization.h' in 'Spectra' (Netherlands eScience Center)\"),\nperson(given = \"Nicolas\", family = \"Renaud\", role = c(\"ctb\", \"cph\"),\ncomment = \"Author of 'RitzPairs.h' and 'SearchSpace.h' in 'Spectra' (Netherlands eScience Center)\"),\nperson(given = \"Jens\", family = \"Wehner\", role = c(\"ctb\", \"cph\"),\ncomment = \"Author of 'JDSymEigsBase.h' in 'Spectra' (Netherlands eScience Center)\"),\nperson(given = \"Gael\", family = \"Guennebaud\", role = c(\"ctb\", \"cph\"),\ncomment = \"'Eigen' library code for tridiagonal eigenvalue decomposition\"),\nperson(given = \"Jitse\", family = \"Niesen\", role = c(\"ctb\", \"cph\"),\ncomment = \"'Eigen' library code for eigenvalue computation\"))", "Maintainer": "Jingsi Ming ", "Description": "Provides functions for the flexible integration of\nheterogeneous scRNA-seq datasets across multiple tissue types,\nplatforms, and experimental batches. Implements the method\ndescribed in Ming (2022) . The package\nincorporates modified 'C++' source code from the 'flashpca'\nlibrary (Abraham, 2014-2016\n) for efficient principal\ncomponent analysis, and the 'Spectra' library (Qiu, 2016-2025)\nfor large-scale eigenvalue and singular value decomposition;\nsee 'inst/COPYRIGHTS' for details on third-party code.", "URL": "https://github.com/mingjingsi/FIRM", "BugReports": "https://github.com/mingjingsi/FIRM/issues", "License": "GPL-3", "Encoding": "UTF-8", "Copyright": "See file 'inst/COPYRIGHTS' for details.", "LazyData": "true", "LazyDataCompression": "bzip2", "RoxygenNote": "7.3.3", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-19 08:17:40 UTC", "User": "root" }, "Author": "Jingsi Ming [aut, cre, cph] (R package development and method\nimplementation, ORCID: 0000-0001-7059-4156), Shuzhen Ding [ctb]\n(R package development and maintenance), Gad Abraham [ctb, cph]\n(Original 'flashpca' 'C++' code for fast randomized PCA),\nYixuan Qiu [ctb, cph] ('Spectra' library for 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