{ "_id": "6a192ea7acfb0bcc41dcfc4a", "Package": "EpiPvr", "Title": "Estimating Plant Pathogen Epidemiology Parameters from\nLaboratory Assays", "Version": "0.0.1", "Authors@R": "person(\"Ruairi\",\"Donnelly\",email = \"rd501@cam.ac.uk\",\nrole = c(\"aut\", \"cre\", \"cph\"),comment = c(ORCID = \"0000-0001-7642-0317\"))", "Description": "Provides functions for estimating plant pathogen\nparameters from access period (AP) experiments. Separate\nfunctions are implemented for semi-persistently transmitted\n(SPT) and persistently transmitted (PT) pathogens. The common\nAP experiment exposes insect cohorts to infected source plants,\nhealthy test plants, and intermediate plants (for PT\npathogens). The package allows estimation of acquisition and\ninoculation rates during feeding, recovery rates, and latent\nprogression rates (for PT pathogens). Additional functions\nsupport inference of epidemic risk from pathogen and local\nparameters, and also simulate AP experiment data. The functions\nimplement probability models for epidemiological analysis, as\nderived in Donnelly et al. (2025), . 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