{
  "_id": "6a12bb43acfb0bcc41d1c2a1",
  "Package": "DMtest",
  "Type": "Package",
  "Title": "Differential Methylation Tests (DMtest)",
  "Version": "1.0.0",
  "Date": "2021-07-22",
  "Authors@R": "c(person(\"James\", \"Dai\", role = c(\"aut\", \"cre\"),\nemail = \"jdai@fredhutch.org\"),\nperson(\"Xiaoyu\", \"Wang\", role = c(\"aut\")))",
  "Author": "James Dai [aut, cre], Xiaoyu Wang [aut]",
  "Maintainer": "James Dai <jdai@fredhutch.org>",
  "Description": "Several tests for differential methylation in methylation\narray data, including one-sided differential mean and variance\ntest. Methods used in the package refer to Dai, J, Wang, X,\nChen, H and others (2021) \"Incorporating increased variability\nin discovering cancer methylation markers\", Biostatistics,\nsubmitted.",
  "License": "GPL (>= 2)",
  "NeedsCompilation": "no",
  "LazyData": "true",
  "RoxygenNote": "7.1.1",
  "VignetteBuilder": "knitr",
  "Packaged": {
    "Date": "2026-05-24 08:45:10 UTC",
    "User": "root"
  },
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2021-07-26 05:50:06 UTC",
  "RemoteUrl": "https://github.com/cran/DMtest",
  "RemoteRef": "HEAD",
  "RemoteSha": "9f894316840e7459940315014f767882dfc22206",
  "MD5sum": "2d0acc8623adaf9fedf84a69cbca5087",
  "_user": "cran",
  "_type": "src",
  "_file": "DMtest_1.0.0.tar.gz",
  "_fileid": "9f7f21cf28328a5847191689f4284609925aa2363f76815b1ec0a0cdffdf6bc4",
  "_filesize": 1366965,
  "_sha256": "9f7f21cf28328a5847191689f4284609925aa2363f76815b1ec0a0cdffdf6bc4",
  "_created": "2026-05-24T08:45:10.000Z",
  "_published": "2026-05-24T08:48:03.243Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77584611254,
      "time": 141,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7183766876"
    },
    {
      "job": 77584611252,
      "time": 99,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7183762374"
    },
    {
      "job": 77584470516,
      "time": 162,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7183751450"
    },
    {
      "job": 77584611243,
      "time": 138,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7183766198"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/26356576749",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/DMtest",
  "_commit": {
    "id": "9f894316840e7459940315014f767882dfc22206",
    "author": "James Dai <jdai@fredhutch.org>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.0\n",
    "time": 1627278606
  },
  "_maintainer": {
    "name": "James Dai",
    "email": "jdai@fredhutch.org"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "matrixStats",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "foreach",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "doParallel",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "markdown",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 217,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/DMtest"
  },
  "_searchresults": 3,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/DMtest.html",
    "manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2021-07-26"
    }
  ],
  "_exports": [
    "dmvc"
  ],
  "_datasets": [
    {
      "name": "beta",
      "title": "Example DNA methylation data for dmvc function",
      "object": "beta",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "TCGA-AA-3492",
        "TCGA-AA-3494",
        "TCGA-A6-5667",
        "TCGA-A6-2685",
        "TCGA-G4-6625",
        "TCGA-A6-4107",
        "TCGA-A6-2684",
        "TCGA-AA-3712",
        "TCGA-AZ-6601",
        "TCGA-G4-6302",
        "TCGA-AA-3488",
        "TCGA-A6-2680",
        "TCGA-G4-6311",
        "TCGA-AA-3506",
        "TCGA-AZ-6599",
        "TCGA-A6-2686",
        "TCGA-AA-3697",
        "TCGA-AA-3495",
        "TCGA-A6-2682",
        "TCGA-A6-2671",
        "TCGA-AA-3713",
        "TCGA-G4-6320",
        "TCGA-AZ-6600",
        "TCGA-G4-6322",
        "TCGA-G4-6297",
        "TCGA-AA-3510",
        "TCGA-G4-6298",
        "TCGA-AA-3660",
        "TCGA-AA-3509",
        "TCGA-AA-3502",
        "TCGA-G4-6295",
        "TCGA-AZ-6598",
        "TCGA-G4-6314",
        "TCGA-A6-2675",
        "TCGA-AA-3663",
        "TCGA-AA-3655",
        "TCGA-A6-2681",
        "TCGA-A6-2679",
        "TCGA-D5-6920",
        "TCGA-A6-5664",
        "TCGA-DM-A0XF",
        "TCGA-A6-4105",
        "TCGA-DM-A1D9",
        "TCGA-G4-6628",
        "TCGA-D5-6931",
        "TCGA-CA-5256",
        "TCGA-D5-6538",
        "TCGA-AA-3655.1",
        "TCGA-F4-6807",
        "TCGA-AD-6965",
        "TCGA-AY-6386",
        "TCGA-A6-6138",
        "TCGA-CA-6719",
        "TCGA-AY-A71X",
        "TCGA-F4-6805",
        "TCGA-G4-6311.1",
        "TCGA-D5-5538",
        "TCGA-3L-AA1B",
        "TCGA-A6-5666",
        "TCGA-A6-2675.1",
        "TCGA-DM-A28G",
        "TCGA-DM-A285",
        "TCGA-A6-A56B",
        "TCGA-CA-6718",
        "TCGA-AD-6888",
        "TCGA-D5-6539",
        "TCGA-G4-6298.1",
        "TCGA-AA-3713.1",
        "TCGA-F4-6854",
        "TCGA-AZ-4682",
        "TCGA-AM-5820",
        "TCGA-F4-6569",
        "TCGA-AZ-4684",
        "TCGA-CM-6169",
        "TCGA-CK-6751",
        "TCGA-CM-6677",
        "TCGA-AZ-6608",
        "TCGA-G4-6310",
        "TCGA-QG-A5Z1",
        "TCGA-F4-6856",
        "TCGA-DM-A0XD",
        "TCGA-AA-3712.1",
        "TCGA-CA-5255",
        "TCGA-CM-5348",
        "TCGA-G4-6320.1",
        "TCGA-G4-6322.1",
        "TCGA-AZ-4315",
        "TCGA-DM-A28A",
        "TCGA-CK-5914",
        "TCGA-AA-3488.1",
        "TCGA-G4-6317",
        "TCGA-AM-5821",
        "TCGA-T9-A92H",
        "TCGA-D5-5537",
        "TCGA-CM-6161",
        "TCGA-G4-6626",
        "TCGA-D5-6537",
        "TCGA-A6-6782",
        "TCGA-DM-A28H",
        "TCGA-AZ-4323",
        "TCGA-NH-A50T",
        "TCGA-NH-A50V",
        "TCGA-G4-6304",
        "TCGA-AY-5543",
        "TCGA-CM-4743",
        "TCGA-CM-6674",
        "TCGA-AD-6964",
        "TCGA-A6-6651",
        "TCGA-CK-4947",
        "TCGA-DM-A28M",
        "TCGA-AA-3663.1",
        "TCGA-CM-6680",
        "TCGA-G4-6297.1",
        "TCGA-A6-2679.1",
        "TCGA-CM-6171",
        "TCGA-A6-A5ZU",
        "TCGA-G4-6315",
        "TCGA-AA-3660.1",
        "TCGA-AU-6004",
        "TCGA-AU-3779",
        "TCGA-CM-6675",
        "TCGA-A6-4107.1",
        "TCGA-AD-A5EJ",
        "TCGA-AZ-5403",
        "TCGA-D5-6928",
        "TCGA-CK-5915",
        "TCGA-A6-6652",
        "TCGA-D5-6535",
        "TCGA-G4-6625.1",
        "TCGA-CM-6678",
        "TCGA-AA-3510.1",
        "TCGA-G4-6295.1",
        "TCGA-D5-6533",
        "TCGA-AA-3662",
        "TCGA-AZ-5407",
        "TCGA-DM-A28K",
        "TCGA-CA-6715",
        "TCGA-DM-A288",
        "TCGA-A6-2681.1",
        "TCGA-F4-6704",
        "TCGA-AD-A5EK",
        "TCGA-G4-6627",
        "TCGA-D5-6932",
        "TCGA-QG-A5YV",
        "TCGA-CM-6679",
        "TCGA-A6-2682.1",
        "TCGA-AZ-4308",
        "TCGA-CM-6165",
        "TCGA-AY-6196",
        "TCGA-AD-6548",
        "TCGA-D5-5541",
        "TCGA-D5-6541",
        "TCGA-DM-A280",
        "TCGA-CM-6676",
        "TCGA-CM-5341",
        "TCGA-AZ-4313",
        "TCGA-D5-6923",
        "TCGA-F4-6808",
        "TCGA-CK-4950",
        "TCGA-AD-6899",
        "TCGA-CM-5863",
        "TCGA-D5-7000",
        "TCGA-CK-4951",
        "TCGA-F4-6570",
        "TCGA-F4-6806",
        "TCGA-AA-3511",
        "TCGA-CM-6164",
        "TCGA-5M-AATE",
        "TCGA-CK-4948",
        "TCGA-CM-5868",
        "TCGA-CA-6716",
        "TCGA-D5-6531",
        "TCGA-5M-AAT5",
        "TCGA-5M-AAT6",
        "TCGA-QG-A5Z2",
        "TCGA-A6-6141",
        "TCGA-DM-A0X9",
        "TCGA-D5-5539",
        "TCGA-AA-3506.1",
        "TCGA-CM-4752",
        "TCGA-AD-6895",
        "TCGA-G4-6293",
        "TCGA-CM-4751",
        "TCGA-DM-A1DB",
        "TCGA-WS-AB45",
        "TCGA-CM-6168",
        "TCGA-A6-A565",
        "TCGA-CM-4750",
        "TCGA-AZ-4681",
        "TCGA-DM-A1DA",
        "TCGA-NH-A8F8",
        "TCGA-D5-6898",
        "TCGA-A6-5667.1",
        "TCGA-A6-6142",
        "TCGA-DM-A1D4",
        "TCGA-NH-A5IV",
        "TCGA-CM-4748",
        "TCGA-D5-6534",
        "TCGA-AA-3509.1",
        "TCGA-DM-A1HA",
        "TCGA-AZ-6607",
        "TCGA-AZ-4614",
        "TCGA-F4-6703",
        "TCGA-AD-6963",
        "TCGA-D5-6930",
        "TCGA-A6-2672",
        "TCGA-D5-6532",
        "TCGA-5M-AAT4",
        "TCGA-DM-A28E",
        "TCGA-CK-5912",
        "TCGA-AZ-6599.1",
        "TCGA-CM-4746",
        "TCGA-CK-5916",
        "TCGA-AZ-4616",
        "TCGA-AD-5900",
        "TCGA-4T-AA8H",
        "TCGA-AZ-6601.1",
        "TCGA-G4-6303",
        "TCGA-5M-AATA",
        "TCGA-AA-3697.1",
        "TCGA-AD-6889",
        "TCGA-CM-5862",
        "TCGA-A6-5662",
        "TCGA-D5-6530",
        "TCGA-DM-A1D8",
        "TCGA-SS-A7HO",
        "TCGA-D5-6927",
        "TCGA-AA-3492.1",
        "TCGA-AY-A54L",
        "TCGA-F4-6855",
        "TCGA-G4-6321",
        "TCGA-CA-6717",
        "TCGA-CA-5797",
        "TCGA-D5-6926",
        "TCGA-CM-6172",
        "TCGA-G4-6307",
        "TCGA-CK-6746",
        "TCGA-NH-A6GA",
        "TCGA-DM-A28F",
        "TCGA-A6-6654",
        "TCGA-CM-6167",
        "TCGA-AA-3495.1",
        "TCGA-G4-6306",
        "TCGA-AA-3502.1",
        "TCGA-A6-5660",
        "TCGA-CM-5344",
        "TCGA-A6-A566",
        "TCGA-A6-6137",
        "TCGA-AA-3489",
        "TCGA-QG-A5YX",
        "TCGA-CM-5864",
        "TCGA-G4-6323",
        "TCGA-F4-6461",
        "TCGA-AZ-6603",
        "TCGA-QL-A97D",
        "TCGA-NH-A6GC",
        "TCGA-A6-2680.1",
        "TCGA-CA-5254",
        "TCGA-A6-6648",
        "TCGA-AA-3496",
        "TCGA-AD-6901",
        "TCGA-AZ-6600.1",
        "TCGA-NH-A6GB",
        "TCGA-D5-6529",
        "TCGA-DM-A28C",
        "TCGA-G4-6314.1",
        "TCGA-DM-A1D6",
        "TCGA-D5-6536",
        "TCGA-CK-5913",
        "TCGA-AZ-6605",
        "TCGA-F4-6463",
        "TCGA-CA-5796",
        "TCGA-A6-5657",
        "TCGA-CK-4952",
        "TCGA-4N-A93T",
        "TCGA-DM-A1HB",
        "TCGA-CM-5860",
        "TCGA-AY-A69D",
        "TCGA-F4-6460",
        "TCGA-CM-4744",
        "TCGA-G4-6588",
        "TCGA-A6-6649",
        "TCGA-CM-6162",
        "TCGA-G4-6294",
        "TCGA-NH-A50U",
        "TCGA-G4-6309",
        "TCGA-QG-A5YW",
        "TCGA-CK-6748",
        "TCGA-CM-6163",
        "TCGA-A6-2685.1",
        "TCGA-DM-A282",
        "TCGA-D5-5540",
        "TCGA-CK-6747",
        "TCGA-G4-6299",
        "TCGA-A6-6140",
        "TCGA-AZ-4615",
        "TCGA-AZ-6606",
        "TCGA-G4-6302.1",
        "TCGA-D5-6924",
        "TCGA-AA-3494.1",
        "TCGA-CM-6166",
        "TCGA-F4-6459",
        "TCGA-D5-6929",
        "TCGA-DM-A1D7",
        "TCGA-D5-6922",
        "TCGA-RU-A8FL",
        "TCGA-CM-4747",
        "TCGA-AY-6197",
        "TCGA-D5-6540",
        "TCGA-CM-5861",
        "TCGA-AZ-6598.1",
        "TCGA-DM-A1D0",
        "TCGA-CM-6170",
        "TCGA-F4-6809",
        "TCGA-CM-5349",
        "TCGA-AD-6890",
        "TCGA-A6-6653",
        "TCGA-AY-A8YK",
        "TCGA-A6-2671.1",
        "TCGA-G4-6586",
        "TCGA-NH-A8F7",
        "TCGA-A6-A567",
        "TCGA-A6-2686.1",
        "TCGA-A6-6780",
        "TCGA-A6-5656",
        "TCGA-A6-6781",
        "TCGA-A6-5665",
        "TCGA-A6-5659",
        "TCGA-A6-6650",
        "TCGA-A6-5661",
        "TCGA-A6-2684.1",
        "TCGA-A6-2677",
        "TCGA-A6-3809",
        "TCGA-A6-3810"
      ],
      "rows": 500,
      "table": true,
      "tojson": true
    },
    {
      "name": "covariate",
      "title": "Example covariate data for dmvc function",
      "object": "covariate",
      "class": [
        "data.frame"
      ],
      "fields": [
        "group",
        "gender",
        "age"
      ],
      "rows": 334,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "beta",
      "title": "Example DNA methylation data for dmvc function",
      "topics": [
        "beta"
      ]
    },
    {
      "page": "covariate",
      "title": "Example covariate data for dmvc function",
      "topics": [
        "covariate"
      ]
    },
    {
      "page": "dmvc",
      "title": "Perform DMC, DVC, DMVC, and DMVC+ tests for genome-wide CpGs in methylation arrays.",
      "topics": [
        "dmvc"
      ]
    }
  ],
  "_rundeps": [
    "codetools",
    "doParallel",
    "foreach",
    "iterators",
    "matrixStats"
  ],
  "_vignettes": [
    {
      "source": "introduction.Rmd",
      "filename": "introduction.html",
      "title": "DMtest",
      "author": "James Dai and Xiaoyu Wang",
      "engine": "knitr::knitr",
      "headings": [
        "Introduction",
        "Example",
        "Reference"
      ],
      "created": "2021-07-26 05:50:06",
      "modified": "2021-07-26 05:50:06",
      "commits": 1
    }
  ],
  "_score": 2,
  "_indexed": true,
  "_nocasepkg": "dmtest",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-24T08:47:32.000Z",
      "distro": "noble",
      "commit": "9f894316840e7459940315014f767882dfc22206",
      "fileid": "b20ca7f268b035371ab8d60049f0f08105cde029e5e29c9bb6ce22176ef5d200",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26356576749"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-05-24T08:46:51.000Z",
      "distro": "noble",
      "commit": "9f894316840e7459940315014f767882dfc22206",
      "fileid": "d6ea612528e2dc8ff94bbcd01ab547077e024fca42024499fecb5017c8adf2a9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26356576749"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-05-24T08:47:39.000Z",
      "commit": "9f894316840e7459940315014f767882dfc22206",
      "fileid": "474d7a1a652774f3e7e2bc2eb734d079672b353b82086207af7fba59f8c31617",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/26356576749"
    }
  ]
}