{ "_id": "6a2bb30c57839859431974d7", "Package": "DIscBIO", "Date": "2026-01-08", "Title": "A User-Friendly Pipeline for Biomarker Discovery in Single-Cell\nTranscriptomics", "Version": "1.2.3", "Authors@R": "c(\nperson(\ngiven = \"Salim\",\nfamily = \"Ghannoum\",\nrole = c(\"aut\", \"cph\"),\nemail = \"salim.ghannoum@medisin.uio.no\"\n),\nperson(\ngiven = \"Alvaro\",\nfamily = \"Köhn-Luque\",\nrole = c(\"aut\", \"ths\"),\nemail = \"alvaro.kohn-luque@medisin.uio.no\"\n),\nperson(\ngiven = \"Waldir\",\nfamily = \"Leoncio\",\nrole = c(\"cre\", \"aut\"),\nemail = \"w.l.netto@medisin.uio.no\"\n),\nperson(\ngiven = \"Damiano\",\nfamily = \"Fantini\",\nrole = c(\"ctb\")\n)\n)", "Description": "An open, multi-algorithmic pipeline for easy, fast and\nefficient analysis of cellular sub-populations and the\nmolecular signatures that characterize them. The pipeline\nconsists of four successive steps: data pre-processing,\ncellular clustering with pseudo-temporal ordering, defining\ndifferential expressed genes and biomarker identification. More\ndetails on Ghannoum et. al. (2021) .\nThis package implements extensions of the work published by\nGhannoum et. al. (2019) .", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.3", "URL": "https://github.com/ocbe-uio/DIscBIO", "BugReports": "https://github.com/ocbe-uio/DIscBIO/issues", "Collate": "'DIscBIO-classes.R' 'DIscBIO-generic-ClassVectoringDT.R'\n'DIscBIO-generic-ClustDiffGenes.R' 'DIscBIO-generic-Clustexp.R'\n'DIscBIO-generic-DEGanalysis.R'\n'DIscBIO-generic-DEGanalysis2clust.R'\n'DIscBIO-generic-Exprmclust.R'\n'DIscBIO-generic-FinalPreprocessing.R'\n'DIscBIO-generic-FindOutliers.R'\n'DIscBIO-generic-NoiseFiltering.R'\n'DIscBIO-generic-Normalizedata.R'\n'DIscBIO-generic-PCAplotSymbols.R'\n'DIscBIO-generic-PlotmclustMB.R'\n'DIscBIO-generic-clusteringOrder.R'\n'DIscBIO-generic-clustheatmap.R' 'DIscBIO-generic-comptSNE.R'\n'DIscBIO-generic-plotExptSNE.R' 'DIscBIO-generic-plotGap.R'\n'DIscBIO-generic-plotLabelstSNE.R'\n'DIscBIO-generic-plotOrderTsne.R'\n'DIscBIO-generic-plotSilhouette.R'\n'DIscBIO-generic-plotSymbolstSNE.R'\n'DIscBIO-generic-plottSNE.R'\n'DIscBIO-generic-pseudoTimeOrdering.R' 'J48DT.R' 'J48DTeval.R'\n'Jaccard.R' 'NetAnalysis.R' 'Networking.R' 'PPI.R'\n'PlotMBpca.R' 'RpartDT.R' 'RpartEVAL.R' 'VolcanoPlot.R'\n'bootstrap.R' 'calc_pcareduceres.R' 'cross.val.R'\n'customConverters.R' 'datasets.R'\n'internal-functions-samr-adapted.R' 'internal-functions.R'\n'retrieve_geneList.R'", "Language": "en-US", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-12 07:10:37 UTC", "User": "root" }, "Author": "Salim Ghannoum [aut, cph], Alvaro Köhn-Luque [aut, ths], Waldir\nLeoncio [cre, aut], Damiano Fantini [ctb]", "Maintainer": "Waldir Leoncio ", "Config/pak/sysreqs": "zlib1g-dev", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2026-01-08 16:51:19 UTC", "RemoteUrl": "https://github.com/cran/DIscBIO", 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