{
  "_id": "6ae08c2b95ca2370cc8ca551",
  "Package": "DIME",
  "Type": "Package",
  "Title": "Differential Identification using Mixture Ensemble",
  "Version": "1.3.1",
  "Date": "2026-09-25",
  "Authors@R": "c(\nperson(\"Cenny\", \"Taslim\",\nemail = \"cenny.taslim@nationwidechildrens.org\",\nrole = c(\"aut\", \"cre\")),\nperson(\"Dustin\", \"Potter\", role = \"ctb\"),\nperson(\"Abbasali\", \"Khalili\", role = \"ctb\"),\nperson(\"Shili\", \"Lin\", role = \"ctb\")\n)",
  "License": "GPL (>= 2)",
  "Description": "A robust identification of differential binding sites\nmethod for analyzing ChIP-seq (Chromatin Immunoprecipitation\nSequencing) comparing two samples that considers an ensemble of\nfinite mixture models combined with a local false discovery\nrate (fdr) allowing for flexible modeling of data. Methods for\nDifferential Identification using Mixture Ensemble (DIME) is\ndescribed in: Taslim et al., (2011)\n<doi:10.1093/bioinformatics/btr165>.",
  "LazyLoad": "yes",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-27 11:30:06 UTC",
    "User": "root"
  },
  "Author": "Cenny Taslim [aut, cre], Dustin Potter [ctb], Abbasali Khalili\n[ctb], Shili Lin [ctb]",
  "Maintainer": "Cenny Taslim <cenny.taslim@nationwidechildrens.org>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2026-09-27 09:00:19 UTC",
  "RemoteUrl": "https://github.com/cran/DIME",
  "RemoteRef": "HEAD",
  "RemoteSha": "42d0bf7ecc12add282c5ac6675a240b883ca5c05",
  "_user": "cran",
  "_type": "src",
  "_file": "DIME_1.3.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/bd3aa87bf415b2e0b045ae5a72cfbbd78ef32166247bf6e0b4fdc1690fccf0fe",
  "_filesize": 215992,
  "_sha256": "bd3aa87bf415b2e0b045ae5a72cfbbd78ef32166247bf6e0b4fdc1690fccf0fe",
  "_expires": "2027-02-04T11:34:01.000Z",
  "_created": "2026-10-27T11:30:06.000Z",
  "_published": "2026-10-27T11:34:03.334Z",
  "_upstream": "https://github.com/cran/DIME",
  "_status": "success",
  "_maintainer": {
    "name": "Cenny Taslim",
    "email": "cenny.taslim@nationwidechildrens.org"
  },
  "_jobs": [
    {
      "job": 122163727831,
      "time": 103,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12730821396"
    },
    {
      "job": 122163727893,
      "time": 110,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12731215870"
    },
    {
      "job": 122163727721,
      "time": 99,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12729969582"
    },
    {
      "job": 122163727719,
      "time": 111,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12731120859"
    },
    {
      "job": 122162691950,
      "time": 142,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12731415094"
    },
    {
      "job": 122163727703,
      "time": 85,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12731435201"
    },
    {
      "job": 122163727813,
      "time": 179,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12731126147"
    },
    {
      "job": 122163727755,
      "time": 105,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12731120843"
    },
    {
      "job": 122163727851,
      "time": 185,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12731705181"
    },
    {
      "job": 122163727766,
      "time": 61,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12730970846"
    }
  ],
  "_buildurl": "https://github.com/r-universe/cran/actions/runs/40496308101",
  "_commit": {
    "id": "42d0bf7ecc12add282c5ac6675a240b883ca5c05",
    "author": "Cenny Taslim <cenny.taslim@nationwidechildrens.org>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.3.1\n",
    "time": 1790499619
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [],
  "_owner": "cran",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-39",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "1.3.1",
      "date": "2026-09-27"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "olechnwin",
      "count": 4,
      "uuid": 20069067
    }
  ],
  "_userbio": {
    "uuid": 6899542,
    "type": "organization",
    "name": "cran",
    "followers": 634,
    "description": "Unofficial read-only mirror of all CRAN R packages"
  },
  "_downloads": {
    "count": 338,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/DIME"
  },
  "_mentions": 19,
  "_searchresults": 24,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/DIME.html",
    "extra/manual.pdf"
  ],
  "_realowner": "cran",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0",
      "date": "2012-10-29"
    },
    {
      "version": "1.1",
      "date": "2012-12-11"
    },
    {
      "version": "1.2",
      "date": "2013-12-09"
    },
    {
      "version": "1.3.0",
      "date": "2022-05-09"
    },
    {
      "version": "1.3.1",
      "date": "2026-09-27"
    }
  ],
  "_exports": [
    "DIME",
    "DIME.classify",
    "DIME.plot.fit",
    "gng.classify",
    "gng.fit",
    "gng.plot.comp",
    "gng.plot.fit",
    "gng.plot.mix",
    "gng.plot.qq",
    "gng.qq.plot.internal",
    "huber",
    "inudge.classify",
    "inudge.fit",
    "inudge.plot.comp",
    "inudge.plot.fit",
    "inudge.plot.mix",
    "inudge.plot.qq",
    "inudge.qq.plot.internal",
    "nudge.classify",
    "nudge.fit",
    "nudge.plot.comp",
    "nudge.plot.fit",
    "nudge.plot.mix",
    "nudge.plot.qq"
  ],
  "_help": [
    {
      "page": "DIME-package",
      "title": "DIME (Differential Identification using Mixtures Ensemble)",
      "topics": [
        "DIME.package",
        "DIME_package"
      ]
    },
    {
      "page": "DIME",
      "title": "DIME (Differential Identification using Mixtures Ensemble)",
      "topics": [
        "DIME"
      ]
    },
    {
      "page": "DIME.classify",
      "title": "Classification Based on The Best Model",
      "topics": [
        "DIME.classify"
      ]
    },
    {
      "page": "DIME.plot.fit",
      "title": "Plot Best Model Goodness of Fit",
      "topics": [
        "DIME.plot",
        "DIME.plot.fit"
      ]
    },
    {
      "page": "gng.classify",
      "title": "Classification Based on GNG Model",
      "topics": [
        "gng.classify"
      ]
    },
    {
      "page": "gng.fit",
      "title": "Function for Fitting GNG model parameters",
      "topics": [
        "gng.fit"
      ]
    },
    {
      "page": "gng.plot.comp",
      "title": "Plot GNG Individual Components",
      "topics": [
        "gng.plot.comp"
      ]
    },
    {
      "page": "gng.plot.fit",
      "title": "Plot GNG Goodness of Fit",
      "topics": [
        "gng.plot.fit"
      ]
    },
    {
      "page": "gng.plot.mix",
      "title": "Plot GNG Mixture Component Function",
      "topics": [
        "gng.plot.mix"
      ]
    },
    {
      "page": "gng.plot.qq",
      "title": "QQ-plot of GNG model vs. observed data",
      "topics": [
        "gng.plot.qq"
      ]
    },
    {
      "page": "huber",
      "title": "Huber's weight function",
      "topics": [
        "huber"
      ]
    },
    {
      "page": "inudge.classify",
      "title": "Classification Based on iNUDGE Model",
      "topics": [
        "inudge.classify"
      ]
    },
    {
      "page": "inudge.fit",
      "title": "Function for Fitting iNUDGE model parameters",
      "topics": [
        "inudge.fit"
      ]
    },
    {
      "page": "inudge.plot.comp",
      "title": "Plot iNUDGE Individual Components",
      "topics": [
        "inudge.plot.comp"
      ]
    },
    {
      "page": "inudge.plot.fit",
      "title": "Plot iNUDGE Goodness of Fit",
      "topics": [
        "inudge.plot.fit"
      ]
    },
    {
      "page": "inudge.plot.mix",
      "title": "Plot iNUDGE Mixture Component Function",
      "topics": [
        "inudge.plot.mix"
      ]
    },
    {
      "page": "inudge.plot.qq",
      "title": "QQ-plot of GNG model vs. observed data",
      "topics": [
        "inudge.plot.qq"
      ]
    },
    {
      "page": "nudge.classify",
      "title": "Classification Based on NUDGE Model",
      "topics": [
        "nudge.classify"
      ]
    },
    {
      "page": "nudge.fit",
      "title": "Function for Fitting NUDGE model parameters",
      "topics": [
        "nudge.fit"
      ]
    },
    {
      "page": "nudge.plot.comp",
      "title": "Plot NUDGE Individual Components",
      "topics": [
        "nudge.plot.comp"
      ]
    },
    {
      "page": "nudge.plot.fit",
      "title": "Plot NUDGE Goodness of Fit",
      "topics": [
        "nudge.plot.fit"
      ]
    },
    {
      "page": "nudge.plot.mix",
      "title": "Plot NUDGE Mixture Component Function",
      "topics": [
        "nudge.plot.mix"
      ]
    },
    {
      "page": "nudge.plot.qq",
      "title": "QQ-plot of GNG model vs. observed data",
      "topics": [
        "nudge.plot.qq"
      ]
    }
  ],
  "_rundeps": [],
  "_score": 2.380211241711606,
  "_indexed": true,
  "_nocasepkg": "dime",
  "_universes": [
    "cran"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3.1",
      "date": "2026-10-27T11:31:59.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "42d0bf7ecc12add282c5ac6675a240b883ca5c05",
      "fileid": "https://r2.ropensci.org/2bb635de613a50529c0e61e9d754671c98b0b36f25651ea6a5e8b40bbbb70f9e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40496308101"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3.1",
      "date": "2026-10-27T11:31:58.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "42d0bf7ecc12add282c5ac6675a240b883ca5c05",
      "fileid": "https://r2.ropensci.org/335f961c861c2e4c7709725176e3c940781692c0949511b3272771fca88f52ab",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40496308101"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.3.1",
      "date": "2026-10-27T11:31:57.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "42d0bf7ecc12add282c5ac6675a240b883ca5c05",
      "fileid": "https://r2.ropensci.org/abb3fe5f569b1702f5e9a6aa1564afae3dfbb397d8e7ae74b8bc176439e7a32f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40496308101"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.3.1",
      "date": "2026-10-27T11:32:03.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "42d0bf7ecc12add282c5ac6675a240b883ca5c05",
      "fileid": "https://r2.ropensci.org/9d31e6e094439d853f1384bf4b392a39b16aa4be5fabf68370e55cc4fb92acfa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40496308101"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.3.1",
      "date": "2026-10-27T11:31:52.000Z",
      "arch": "emscripten",
      "commit": "42d0bf7ecc12add282c5ac6675a240b883ca5c05",
      "fileid": "https://r2.ropensci.org/6082ba2f897312180fa97e7c605b4edcdfb0c8c29ea69445a1a282bbd24d2dcf",
      "status": "success",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40496308101"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.3.1",
      "date": "2026-10-27T11:33:03.000Z",
      "arch": "aarch64",
      "commit": "42d0bf7ecc12add282c5ac6675a240b883ca5c05",
      "fileid": "https://r2.ropensci.org/bb045dedd6e3cc6dc5c0c1325a584d6e1ed0c81194629a5e83b180d02d5c1502",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40496308101"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.3.1",
      "date": "2026-10-27T11:31:15.000Z",
      "arch": "x86_64",
      "commit": "42d0bf7ecc12add282c5ac6675a240b883ca5c05",
      "fileid": "https://r2.ropensci.org/a5ddff0346d4e92edf4c935cd894d6908b13dcf4d92fa765c5e89174b29429ce",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40496308101"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.3.1",
      "date": "2026-10-27T11:33:10.000Z",
      "arch": "aarch64",
      "commit": "42d0bf7ecc12add282c5ac6675a240b883ca5c05",
      "fileid": "https://r2.ropensci.org/e8332df84b1fb58e300a8917a947584863b1ca52c02f4215fea17f3cd3057527",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40496308101"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.3.1",
      "date": "2026-10-27T11:31:07.000Z",
      "arch": "x86_64",
      "commit": "42d0bf7ecc12add282c5ac6675a240b883ca5c05",
      "fileid": "https://r2.ropensci.org/dbeb120d645266d0dc47f02e248451900135bc6577c35d915f817c005bf8b936",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/cran/actions/runs/40496308101"
    }
  ]
}