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  "Package": "CytobankAPI",
  "Title": "Cytobank API Wrapper for R",
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  "Authors@R": "c(\nperson(\"Stu\", \"Blair\", email=\"sblair@beckman.com\", role=c(\"aut\", \"cre\")),\nperson(\"Qihao\", \"Qi\", email=\"qqi@beckman.com\", role=c(\"aut\")),\nperson(\"Stefanie\", \"Trop\", email=\"strop@beckman.com\", role=\"aut\"),\nperson(\"Louis\", \"Liu\", email=\"ZLIU011@beckman.com\", role=\"aut\"),\nperson(\"Preston\", \"Ng\", role=\"aut\"),\nperson(\"Chris\", \"Ciccolella\", role=\"aut\"),\nperson(\"Katherine\", \"Drake\", role=\"aut\"))",
  "Description": "Tools to interface with Cytobank's API via R, organized by\nendpoints that represent various areas of Cytobank\nfunctionality. Learn more about Cytobank at\n<https://www.beckman.com/flow-cytometry/software>.",
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  "Copyright": "2020 Beckman Coulter, Inc.",
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  "Maintainer": "Stu Blair <sblair@beckman.com>",
  "Repository": "https://cran.r-universe.dev",
  "Date/Publication": "2023-04-21 07:32:30 UTC",
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    "attachments.upload",
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    "authentication.logout",
    "authentication.revoke_all_tokens",
    "authentication.revoke_all_tokens_user",
    "autogating.copy_autogating_analysis_settings",
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    "autogating.delete_autogating_analysis",
    "autogating.list_autogating_analyses_of_type",
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    "autogating.show_autogating_analysis_details",
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    "autogating.update_autogating_training_analysis_details",
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    "citrus.rename",
    "citrus.run",
    "citrus.show",
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    "citrus.update",
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    "compensations.show",
    "compensations.upload_csv",
    "CytobankAPI_news",
    "dimensionality_reduction.copy_settings",
    "dimensionality_reduction.delete",
    "dimensionality_reduction.list",
    "dimensionality_reduction.new",
    "dimensionality_reduction.rename",
    "dimensionality_reduction.run",
    "dimensionality_reduction.show",
    "dimensionality_reduction.status",
    "dimensionality_reduction.update",
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    "experiments.clone_full",
    "experiments.clone_selective",
    "experiments.delete",
    "experiments.full_access_users_add",
    "experiments.full_access_users_list",
    "experiments.full_access_users_remove",
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    "experiments.show",
    "experiments.trash",
    "experiments.update",
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    "fcs_files.download_zip",
    "fcs_files.file_internal_comp_show",
    "fcs_files.list",
    "fcs_files.show",
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    "fcs_files.upload",
    "fcs_files.upload_zip",
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    "gates.gatingML_upload",
    "gates.list",
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    "panels.show",
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    "peacoqc.list",
    "peacoqc.new",
    "peacoqc.rename",
    "peacoqc.run",
    "peacoqc.show",
    "peacoqc.status",
    "peacoqc.update",
    "populations.list",
    "populations.show",
    "sample_tags.download",
    "sample_tags.upload",
    "scales.list",
    "scales.show",
    "scales.update",
    "spade.bubbles_export",
    "spade.bubbles_set",
    "spade.bubbles_show",
    "spade.copy_results",
    "spade.copy_settings",
    "spade.delete",
    "spade.download_all",
    "spade.download_clusters_table",
    "spade.download_global_boundaries_table",
    "spade.download_gml",
    "spade.download_layout_table",
    "spade.download_statistics_tables",
    "spade.list",
    "spade.new",
    "spade.rename",
    "spade.run",
    "spade.show",
    "spade.status",
    "spade.update",
    "statistics.event_counts",
    "statistics.general",
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    "visne.copy_settings",
    "visne.delete",
    "visne.helper.set_populations",
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    "visne.new",
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    "visne.run",
    "visne.show",
    "visne.status",
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      "title": "S4 Advanced Analysis Class",
      "topics": [
        "AdvancedAnalysis-class"
      ]
    },
    {
      "page": "attachments",
      "title": "Attachment Endpoints",
      "topics": [
        "attachments",
        "attachments.delete",
        "attachments.delete,UserSession-method",
        "attachments.download",
        "attachments.download,UserSession-method",
        "attachments.download_zip",
        "attachments.download_zip,UserSession-method",
        "attachments.list",
        "attachments.list,UserSession-method",
        "attachments.show",
        "attachments.show,UserSession-method",
        "attachments.update",
        "attachments.update,UserSession-method",
        "attachments.upload",
        "attachments.upload,UserSession-method"
      ]
    },
    {
      "page": "authentication",
      "title": "Authentication Endpoints",
      "topics": [
        "authenticate",
        "authentication",
        "authentication.logout",
        "authentication.logout,UserSession-method",
        "authentication.revoke_all_tokens",
        "authentication.revoke_all_tokens,UserSession-method",
        "authentication.revoke_all_tokens_user",
        "authentication.revoke_all_tokens_user,UserSession-method"
      ]
    },
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      "page": "autogating",
      "title": "Automatic gating Endpoints",
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        "autogating.copy_autogating_analysis_settings",
        "autogating.copy_autogating_analysis_settings,UserSession-method",
        "autogating.create_autogating_analysis",
        "autogating.create_autogating_analysis,UserSession-method",
        "autogating.delete_autogating_analysis",
        "autogating.delete_autogating_analysis,UserSession-method",
        "autogating.list_autogating_analyses_of_type",
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        "autogating.rename_autogating_analysis",
        "autogating.rename_autogating_analysis,UserSession-method",
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        "autogating.run_autogating_analysis,UserSession-method",
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        "autogating.update_autogating_training_analysis_details,UserSession-method"
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        "citrus.copy_settings",
        "citrus.copy_settings,UserSession,CITRUS-method",
        "citrus.delete",
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        "citrus.download",
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        "citrus.status,UserSession,CITRUS-method",
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        "citrus.update,UserSession,CITRUS-method"
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    },
    {
      "page": "CITRUS-class",
      "title": "S4 CITRUS Class",
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        "CITRUS-class"
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    },
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      "title": "Compensation Endpoints",
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        "compensations.list,UserSession-method",
        "compensations.show",
        "compensations.show,UserSession-method",
        "compensations.upload_csv",
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      ]
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      "title": "DimensionalityReduction Endpoints",
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        "dimensionality_reduction.delete",
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        "dimensionality_reduction.list",
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        "dimensionality_reduction.rename",
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        "drop.upload,UserSession-method"
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    },
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        "experiments.clone_full,UserSession-method",
        "experiments.clone_selective",
        "experiments.clone_selective,UserSession-method",
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    {
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        "fcs_files.download,UserSession-method",
        "fcs_files.download_zip",
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        "fcs_files.upload,UserSession-method",
        "fcs_files.upload_zip",
        "fcs_files.upload_zip,UserSession-method"
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    },
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      "page": "flowsom",
      "title": "FlowSOM Endpoints",
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        "flowsom.delete",
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        "flowsom.list",
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        "flowsom.new",
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        "flowsom.rename",
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        "flowsom.run",
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        "flowsom.show",
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        "flowsom.status",
        "flowsom.status,UserSession,FlowSOM-method",
        "flowsom.update",
        "flowsom.update,UserSession,FlowSOM-method"
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    },
    {
      "page": "FlowSOM-class",
      "title": "S4 FlowSOM Class",
      "topics": [
        "FlowSOM-class"
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    },
    {
      "page": "gates",
      "title": "Gate Endpoints",
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        "gates.apply",
        "gates.apply,UserSession-method",
        "gates.gatingML_download",
        "gates.gatingML_download,UserSession-method",
        "gates.gatingML_upload",
        "gates.gatingML_upload,UserSession-method",
        "gates.list",
        "gates.list,UserSession-method",
        "gates.show",
        "gates.show,UserSession-method"
      ]
    },
    {
      "page": "helper_functions",
      "title": "Helper Functions",
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        "helper.filter_names_to_ids_from_df",
        "helper_functions"
      ]
    },
    {
      "page": "news",
      "title": "News",
      "topics": [
        "CytobankAPI_news",
        "news"
      ]
    },
    {
      "page": "optSNE-class",
      "title": "S4 opt-SNE Class",
      "topics": [
        "optSNE-class"
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    },
    {
      "page": "panels",
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        "panels.list",
        "panels.list,UserSession-method",
        "panels.show",
        "panels.show,UserSession-method"
      ]
    },
    {
      "page": "peacoqc",
      "title": "PeacoQC Endpoints",
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        "peacoqc.copy_settings",
        "peacoqc.copy_settings,UserSession,PeacoQC-method",
        "peacoqc.list",
        "peacoqc.list,UserSession-method",
        "peacoqc.new",
        "peacoqc.new,UserSession-method",
        "peacoqc.rename",
        "peacoqc.rename,UserSession,PeacoQC-method",
        "peacoqc.run",
        "peacoqc.run,UserSession,PeacoQC-method",
        "peacoqc.show",
        "peacoqc.show,UserSession-method",
        "peacoqc.status",
        "peacoqc.status,UserSession,PeacoQC-method",
        "peacoqc.update",
        "peacoqc.update,UserSession,PeacoQC-method"
      ]
    },
    {
      "page": "PeacoQC-class",
      "title": "S4 PeacoQC Class",
      "topics": [
        "PeacoQC-class"
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    },
    {
      "page": "populations",
      "title": "Population Endpoints",
      "topics": [
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        "populations.list",
        "populations.list,UserSession-method",
        "populations.show",
        "populations.show,UserSession-method"
      ]
    },
    {
      "page": "sample_tags",
      "title": "Sample Tag Endpoints",
      "topics": [
        "sample_tags",
        "sample_tags.download",
        "sample_tags.download,UserSession-method",
        "sample_tags.upload",
        "sample_tags.upload,UserSession-method"
      ]
    },
    {
      "page": "scales",
      "title": "Scale Endpoints",
      "topics": [
        "scales",
        "scales.list",
        "scales.list,UserSession-method",
        "scales.show",
        "scales.show,UserSession-method",
        "scales.update",
        "scales.update,UserSession-method"
      ]
    },
    {
      "page": "spade",
      "title": "SPADE Endpoints",
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      "page": "SPADE-class",
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      "page": "statistics",
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      "topics": [
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        "statistics.event_counts",
        "statistics.event_counts,UserSession-method",
        "statistics.general",
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      "page": "tSNE-class",
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      "title": "S4 UMAP Class",
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      "page": "UserSession-class",
      "title": "S4 Cytobank UserSession Class",
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      "page": "visne",
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        "visne.delete",
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      "headings": [
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      "headings": [
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        "Compensations dataframes",
        "Statistics dataframes",
        "Raw lists",
        "Timeouts"
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      "created": "2017-01-12 14:13:25",
      "modified": "2022-03-31 17:00:02",
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