{ "_id": "6a113a09acfb0bcc41ce5679", "Package": "CeRNASeek", "Type": "Package", "Title": "Identification and Analysis of ceRNA Regulation", "Version": "2.1.3", "Date": "2020-04-20", "Author": "Mengying Zhang,Yongsheng Li,Juan Xu*,Xia Li*", "Maintainer": "Mengying Zhang ", "Description": "Provides several functions to identify and analyse miRNA\nsponge, including popular methods for identifying miRNA sponge\ninteractions, two types of global ceRNA regulation prediction\nmethods and four types of context-specific prediction methods(\nLi Y et al.(2017) ), which are based on\nmiRNA-messenger RNA regulation alone, or by integrating\nheterogeneous data, respectively. In addition, For predictive\nceRNA relationship pairs, this package provides several\ndownstream analysis algorithms, including regulatory network\nanalysis and functional annotation analysis, as well as\nsurvival prognosis analysis based on expression of ceRNA\nternary pair.", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "biocViews": "competing endogenous RNA (ceRNA),\nGeneExpression,triplet,function,Software", "Packaged": { "Date": "2026-05-23 05:21:45 UTC", "User": "root" }, "NeedsCompilation": "no", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2020-04-29 07:00:02 UTC", "RemoteUrl": "https://github.com/cran/CeRNASeek", "RemoteRef": "HEAD", "RemoteSha": "4a33060d7ab80b455cace905464f2e29a2bb5d58", "MD5sum": "78277072107ae1bf127f099724619a49", "_user": "cran", "_type": "src", "_file": "CeRNASeek_2.1.3.tar.gz", "_fileid": "134b910f2352f6f54f61180eca43136e83a1a476584491d9b6bf4f22196da805", "_filesize": 572294, "_sha256": "134b910f2352f6f54f61180eca43136e83a1a476584491d9b6bf4f22196da805", "_created": "2026-05-23T05:21:45.000Z", "_published": "2026-05-23T05:24:25.507Z", "_distro": "noble", "_jobs": [ { "job": 77499461772, "time": 127, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7174511515" }, { "job": 77499461790, "time": 126, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7174511433" }, { "job": 77499282969, "time": 185, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7174497399" }, { "job": 77499461776, "time": 111, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7174509881" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/26324422392", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/CeRNASeek", "_commit": { "id": "4a33060d7ab80b455cace905464f2e29a2bb5d58", "author": "Mengying Zhang ", "committer": "cran-robot ", "message": "version 2.1.3\n", "time": 1588143602 }, "_maintainer": { "name": "Mengying Zhang", "email": "zhangmengying@hrbmu.edu.cn" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.0", "role": "Depends" }, { "package": "gtools", "role": "Imports" }, { "package": "igraph", "role": "Imports" }, { "package": "survival", "role": "Imports" }, { "package": "parallel", "role": "Imports" } ], "_owner": "cran", "_selfowned": false, "_usedby": 0, "_updates": [], "_tags": [], "_topics": [ "competing endogenous rna (cerna)", "geneexpression", "triplet", "function", "software" ], "_stars": 0, "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 275, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/CeRNASeek" }, "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/CeRNASeek.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "manual.pdf" ], "_realowner": "cran", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2019-04-04" }, { "version": "2.0", "date": "2019-07-08" }, { "version": "2.1", "date": "2019-07-20" }, { "version": "2.1.2", "date": "2020-01-11" }, { "version": "2.1.3", "date": "2020-04-29" } ], "_exports": [ "ceRNA.app", "ceRNA.basic", "ceRNA.cernia", "ceRNA.cmi", "ceRNA.cor", "ceRNA.enrich", "ceRNA.Net", "ceRNA.surv", "surv.plot" ], "_datasets": [ { "name": "dataset", "title": "Data for Examples", "object": "dataset", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "CeRNASeek-package", "title": "CeRNASeek", "topics": [ "CeRNASeek-package", "CeRNASeek" ] }, { "page": "ceRNA.app", "title": "identify the miRNAs that co-regulate the gene pairs of interest.", "topics": [ "ceRNA.app" ] }, { "page": "ceRNA.basic", "title": "Identifying miRNA sponge interactions using ceRNA.basic function", "topics": [ "ceRNA.basic" ] }, { "page": "ceRNA.cernia", "title": "identifying miRNA sponge interactions using ceRNA.cernia function.", "topics": [ "ceRNA.cernia" ] }, { "page": "ceRNA.cmi", "title": "identifying miRNA sponge interactions using ceRNA.cmi function.", "topics": [ "ceRNA.cmi" ] }, { "page": "ceRNA.cor", "title": "identifying miRNA sponge interactions using ceRNA.cor function", "topics": [ "ceRNA.cor" ] }, { "page": "ceRNA.enrich", "title": "Enrich the biological functions of interest.", "topics": [ "ceRNA.enrich" ] }, { "page": "ceRNA.Net", "title": "visualize and analyze the identified ceRNA-ceRNA network using ceRNA.Net function", "topics": [ "ceRNA.Net" ] }, { "page": "ceRNA.surv", "title": "survival analysis of ceRNA ternary relationship pairs", "topics": [ "ceRNA.surv" ] }, { "page": "dataset", "title": "Data for Examples", "topics": [ "dataset" ] }, { "page": "surv.plot", "title": "Draw survival curve", "topics": [ "surv.plot" ] } ], "_rundeps": [ "cli", "cpp11", "glue", "gtools", "igraph", "lattice", "lifecycle", "magrittr", "Matrix", "pkgconfig", "rlang", "survival", "vctrs" ], "_score": 1, "_indexed": true, "_nocasepkg": "cernaseek", "_universes": [ "cran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.1.3", "date": "2026-05-23T05:23:39.000Z", "distro": "noble", "commit": "4a33060d7ab80b455cace905464f2e29a2bb5d58", "fileid": "b7cafb21e2c3528271982505d727f12f86ac4aba49b46c9fec9a3d3f87f4b1dc", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26324422392" }, { "r": "4.6.0", "os": "linux", "version": "2.1.3", "date": "2026-05-23T05:23:38.000Z", "distro": "noble", "commit": "4a33060d7ab80b455cace905464f2e29a2bb5d58", "fileid": "5477ae5e9db61a25af4d0a67ab1b8ffa9f8eb76fa51e8d2d954c786afc25c482", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/26324422392" }, { "r": "4.6.0", "os": "wasm", "version": "2.1.3", "date": "2026-05-23T05:23:57.000Z", "commit": "4a33060d7ab80b455cace905464f2e29a2bb5d58", "fileid": "a3554ddde18b35f5b497f8341e773f54adf8fd44c631a9a50b59e290616c1c0e", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/26324422392" } ] }