{ "_id": "6a0ff439acfb0bcc41c775fa", "Package": "CLONETv2", "Type": "Package", "Title": "Clonality Estimates in Tumor", "Version": "2.2.1", "Authors@R": "c(person(\"Davide\", \"Prandi\", email = \"davide.prandi@unitn.it\",role = c(\"aut\")), \nperson(\"Alessandro\", \"Romanel\", email = \"alessandro.romanel@unitn.it\",role = c(\"ctb\")),\nperson(\"Tarcisio\", \"Fedrizzi\", email = \"tarcisio.fedrizzi@unitn.it\",role = c(\"ctb\")),\nperson(\"Yari\", \"Ciani\", email = \"yari.ciani@unitn.it\",role = c(\"cre\")))", "Author": "Davide Prandi [aut], Alessandro Romanel [ctb], Tarcisio\nFedrizzi [ctb], Yari Ciani [cre]", "Maintainer": "Yari Ciani ", "Description": "Analyze data from next-generation sequencing experiments\non genomic samples. 'CLONETv2' offers a set of functions to\ncompute allele specific copy number and clonality from\nsegmented data and SNPs position pileup. The package has also\ncalculated the clonality of single nucleotide variants given\nread counts at mutated positions. The package has been\ndeveloped at the laboratory of Computational and Functional\nOncology, Department of CIBIO, University of Trento (Italy),\nunder the supervision of prof Francesca Demichelis. References:\nPrandi et al. (2014) ; Carreira\net al. (2014) ; Romanel et\nal. 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