{ "_id": "6a1f155eb401979e7341e548", "Package": "Bios2cor", "Type": "Package", "Title": "From Biological Sequences and Simulations to Correlation\nAnalysis", "Version": "2.2.2", "Date": "2024-10-15", "Author": "Bruck Taddese [aut], Antoine Garnier [aut], Madeline Deniaud\n[aut], Julien Pele [ctb], Lea Bellenger [ctb], Jean-Michel Becu\n[ctb], Marie Chabbert [aut, cre]", "Authors@R": "c(person(given = \"Bruck\",\nfamily = \"Taddese\",\nrole = \"aut\"),\nperson(given = \"Antoine\",\nfamily = \"Garnier\",\nrole = \"aut\"),\nperson(given = \"Madeline\",\nfamily = \"Deniaud\",\nrole = \"aut\"),\nperson(given = \"Julien\",\nfamily = \"Pele\",\nrole = \"ctb\"),\nperson(given = \"Lea\",\nfamily = \"Bellenger\",\nrole = \"ctb\"),\nperson(given = \"Jean-Michel\",\nfamily = \"Becu\",\nrole = \"ctb\"),\nperson(given = \"Marie\",\nfamily = \"Chabbert\",\nrole = c(\"aut\", \"cre\"),\nemail = \"marie.chabbert@univ-angers.fr\"))", "Maintainer": "Marie Chabbert ", "Description": "Utilities for computation and analysis of\ncorrelation/covariation in multiple sequence alignments and in\nside chain motions during molecular dynamics simulations.\nFeatures include the computation of correlation/covariation\nscores using a variety of scoring functions between either\nsequence positions in alignments or side chain dihedral angles\nin molecular dynamics simulations and utilities to analyze the\ncorrelation/covariation matrix through a variety of tools\nincluding network representation and principal components\nanalysis. In addition, several utility functions are based on\nthe R graphical environment to provide friendly tools for help\nin data interpretation. Examples of sequence covariation\nanalysis are provided in: (1) Pele J, Moreau M, Abdi H, Rodien\nP, Castel H, Chabbert M (2014) and (2)\nTaddese B, Deniaud M, Garnier A, Tiss A, Guissouma H, Abdi H,\nHenrion D, Chabbert M (2018)\n. An example of side chain\ncorrelated motion analysis is provided in: Taddese B, Garnier\nA, Abdi H, Henrion D, Chabbert M (2020)\n. This work was supported by\nthe French National Research Agency (Grant number:\nANR-11-BSV2-026) and by GENCI (Grant number: 100567).", "License": "GPL (>= 2)", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-17 06:41:05 UTC", "User": "root" }, "Repository": "https://cran.r-universe.dev", "Date/Publication": "2024-11-14 13:40:23 UTC", "RemoteUrl": "https://github.com/cran/Bios2cor", "RemoteRef": "HEAD", "RemoteSha": "9b8bb86fda514065259eb94b6f895685f256f0c2", "MD5sum": "c558063300b9e52ddf596959bda13ebd", "_user": "cran", "_type": "src", "_file": "Bios2cor_2.2.2.tar.gz", "_fileid": "d733352032131fa945fc3b681593f71417054e0c2f23188022973b00fad9b4f0", "_filesize": 1187021, "_sha256": "d733352032131fa945fc3b681593f71417054e0c2f23188022973b00fad9b4f0", "_created": "2026-05-17T06:41:05.000Z", "_published": "2026-06-02T17:39:42.797Z", "_distro": "noble", "_jobs": [ { "job": 79133984465, "time": 144, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7040095033" 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