{ "_id": "6a350cd53efcd9bda43dc5be", "Package": "BeastJar", "Type": "Package", "Title": "JAR Dependency for MCMC Using 'BEAST'", "Version": "10.5.1", "Authors@R": "c(\nperson(\"Marc A.\", \"Suchard\", email = \"msuchard@ucla.edu\", role = c(\"aut\",\"cre\",\"cph\")),\nperson(\"Andrew\", \"Rambaut\", role = \"cph\"),\nperson(\"Alexei J.\", \"Drummond\", role = \"cph\")\n)", "Description": "Provides JAR to perform Markov chain Monte Carlo (MCMC)\ninference using the popular Bayesian Evolutionary Analysis by\nSampling Trees 'BEAST X' software library of Baele et al (2025)\n. 'BEAST X' supports\nauto-tuning Metropolis-Hastings, slice, Hamiltonian Monte Carlo\nand Sequential Monte Carlo sampling for a large variety of\ncomposable standard and phylogenetic statistical models using\nhigh performance computing. By placing the 'BEAST X' JAR in\nthis package, we offer an efficient distribution system for\n'BEAST X' use by other R packages using CRAN.", "License": "Apache License 2.0", "Encoding": "UTF-8", "URL": "https://github.com/beast-dev/BeastJar", "Copyright": "See file COPYRIGHTS", "RoxygenNote": "7.3.2", "SystemRequirements": "Java (>= 1.8)", "Language": "en-US", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-19 09:29:39 UTC", "User": "root" }, "Author": "Marc A. Suchard [aut, cre, cph], Andrew Rambaut [cph], Alexei\nJ. Drummond [cph]", "Maintainer": "Marc A. Suchard ", "Config/pak/sysreqs": "default-jdk", "Repository": "https://cran.r-universe.dev", "Date/Publication": "2025-08-21 13:20:02 UTC", "RemoteUrl": "https://github.com/cran/BeastJar", "RemoteRef": "HEAD", "RemoteSha": "f9e9dda6f79b3b96efc24d9c42c815c7428d49b4", "MD5sum": "ca3dc1aca518ef0764be407d46b921f4", "_user": "cran", "_type": "src", "_file": "BeastJar_10.5.1.tar.gz", "_fileid": "02481dbc7bb958967925afa67e3b56823e2cb08dfcf1ad15d6bf7b482ffa99f0", "_filesize": 8164607, "_sha256": "02481dbc7bb958967925afa67e3b56823e2cb08dfcf1ad15d6bf7b482ffa99f0", "_created": "2026-06-19T09:29:39.000Z", "_published": "2026-06-19T09:33:08.958Z", "_distro": "noble", "_jobs": [ { "job": 82322434316, "time": 173, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7746392899" }, { "job": 82322434248, "time": 150, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7746385178" }, { "job": 82321975334, "time": 173, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7746333197" }, { "job": 82322434246, "time": 126, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7746376653" } ], "_buildurl": "https://github.com/r-universe/cran/actions/runs/27817391215", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/BeastJar", "_commit": { "id": "f9e9dda6f79b3b96efc24d9c42c815c7428d49b4", "author": "Marc A. Suchard ", "committer": "cran-robot ", "message": "version 10.5.1\n", "time": 1755782402 }, "_maintainer": { "name": "Marc A. Suchard", "email": "msuchard@ucla.edu", "login": "msuchard", "description": "", "uuid": 149039 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "rJava", "role": "Imports" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "cran", "_selfowned": false, "_usedby": 1, "_updates": [ { "week": "2025-29", "n": 1 }, { "week": "2025-34", "n": 1 } ], "_tags": [ { "name": "10.5.0", "date": "2025-07-20" }, { "name": "10.5.1", "date": "2025-08-21" } ], "_stars": 0, "_contributors": [ { "user": "msuchard", "count": 4, "uuid": 149039 } ], "_userbio": { "uuid": 6899542, "type": "organization", "name": "cran", "followers": 610, "description": "Unofficial read-only mirror of all CRAN R packages" }, "_downloads": { "count": 450, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BeastJar" }, "_devurl": "https://github.com/beast-dev/beastjar", "_searchresults": 2, "_topics": [ "openjdk" ], "_rbuild": "4.6.0", "_assets": [ "extra/BeastJar.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/beast-dev/beastjar", "_realowner": "beast-dev", "_cranurl": false, "_releases": [ { "version": "1.10.5", "date": "2020-10-13" }, { "version": "1.10.6", "date": "2020-10-26" }, { "version": "10.5.0", "date": "2025-07-20" }, { "version": "10.5.1", "date": "2025-08-21" } ], "_exports": [ "supportsJava8" ], "_help": [ { "page": "BeastJar", "title": "BeastJar", "topics": [ "BeastJar" ] }, { "page": "supportsJava8", "title": "Determine if Java virtual machine supports Java", "topics": [ "supportsJava8" ] } ], "_readme": "https://github.com/cran/BeastJar/raw/HEAD/README.md", "_rundeps": [ "rJava" ], "_sysdeps": [ { "shlib": "libjvm", "package": "openjdk-21-jre-headless", "headers": "openjdk-21-jre-headless", "source": "openjdk", "version": "21.0.11+10-1~24.04.2", "name": "openjdk", "homepage": "https://openjdk.java.net/", "description": "OpenJDK Java runtime, using Hotspot JIT (headless)" } ], "_score": 2.4771212547196626, "_indexed": false, "_nocasepkg": "beastjar", "_universes": [ "cran" ], "_indexurl": "https://beast-dev.r-universe.dev/BeastJar", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "10.5.1", "date": "2026-06-19T09:32:31.000Z", "distro": "noble", "commit": "f9e9dda6f79b3b96efc24d9c42c815c7428d49b4", "fileid": "3ff8281e8038ab7e2b05185252b0c5f68e1f1648abf2110a4b4b99be670367cd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27817391215" }, { "r": "4.6.0", "os": "linux", "version": "10.5.1", "date": "2026-06-19T09:32:07.000Z", "distro": "noble", "commit": "f9e9dda6f79b3b96efc24d9c42c815c7428d49b4", "fileid": "a61ecd34d8b8651fbc4bb334b929b0f9b46ca9709fa0b5917c4d742c60b2cc14", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/cran/actions/runs/27817391215" }, { "r": "4.6.0", "os": "wasm", "version": "10.5.1", "date": "2026-06-19T09:31:59.000Z", "commit": "f9e9dda6f79b3b96efc24d9c42c815c7428d49b4", "fileid": "46b6be52dc3db3ab27088c27bd6d1caeb45ec7df0c32d22c2c3214ca816a6f19", "status": "success", "buildurl": "https://github.com/r-universe/cran/actions/runs/27817391215" } ] }